Gchil8221.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil8221.t1
Unique NameGchil8221.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length351
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004384_piloncontigtig00004384_pilon:725162..726563 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704736.1
Preferred nameCCP1
PFAMsperoxidase
Max annot lvl2759|Eukaryota
KEGG koko:K00428
GOsGO:0000302,GO:0003674,GO:0003824,GO:0004130,GO:0004601,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005758,GO:0005829,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0009056,GO:0009636,GO:0009987,GO:0016209,GO:0016491,GO:0016684,GO:0016999,GO:0017001,GO:0017144,GO:0031967,GO:0031970,GO:0031974,GO:0031975,GO:0033554,GO:0034599,GO:0034614,GO:0042221,GO:0042737,GO:0042743,GO:0042744,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044248,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0050896,GO:0051186,GO:0051187,GO:0051716,GO:0055114,GO:0070013,GO:0070887,GO:0072593,GO:0097237,GO:0098754,GO:0098869,GO:1901700,GO:1901701,GO:1990748
Evalue4.16e-123
EggNOG OGsCOG0685@1|root,2QR1E@2759|Eukaryota
EC1.11.1.5
Descriptioncytochrome-c peroxidase activity
COG categoryE
BiGG ReactioniMM904.YKR066C
BRITEko00000,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8221Gchil8221Gracilaria chilensis NLEC103_M9 malegenetig00004384_pilon 725162..726563 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8221.t1Gchil8221.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004384_pilon 725162..726563 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8221.t1.stop1Gchil8221.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004384_pilon 725162..725164 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8221.t1.CDS1Gchil8221.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004384_pilon 725162..725367 -
Gchil8221.t1.CDS2Gchil8221.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004384_pilon 725469..725829 -
Gchil8221.t1.CDS3Gchil8221.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004384_pilon 725928..725946 -
Gchil8221.t1.CDS4Gchil8221.t1.CDS4Gracilaria chilensis NLEC103_M9 maleCDStig00004384_pilon 726097..726563 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8221.t1.exon1Gchil8221.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004384_pilon 725162..725367 -
Gchil8221.t1.exon2Gchil8221.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004384_pilon 725469..725829 -
Gchil8221.t1.exon3Gchil8221.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004384_pilon 725928..725946 -
Gchil8221.t1.exon4Gchil8221.t1.exon4Gracilaria chilensis NLEC103_M9 maleexontig00004384_pilon 726097..726563 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8221.t1.intron1Gchil8221.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004384_pilon 725368..725468 -
Gchil8221.t1.intron2Gchil8221.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004384_pilon 725830..725927 -
Gchil8221.t1.intron3Gchil8221.t1.intron3Gracilaria chilensis NLEC103_M9 maleintrontig00004384_pilon 725947..726096 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8221.t1.start1Gchil8221.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004384_pilon 726561..726563 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil8221.t1 ID=Gchil8221.t1|Name=Gchil8221.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=351bp
MATRVLVARLAARALSTAVASTPASRISRIATSRTFEAATAATRSTTALT
CVAAAGLGASVVYAASPADEQVSKEEIAAAAAAIHGILDNDDEDLGPTLV
RLAWHASGTYDKDSGSGGSEGATMRFKPESEHGANAGLHVARNALEPIKI
LFPNFTYADLWTLAGAVAIEHMGGPNIVWRPGRRDAADESECTPDGRLPD
ADKGKVGATIRHVREIFTRQGFDDREMVALIGAHALGRCHTDRSGYTGPW
TRAPTTFSNLYYKELLENIWTLKQWDGPDQFEDPSGDLMMLPSDMALIWD
KKFRKYVVEFANNEDEFFKAFASAFQKLEENGVKAFEGQGGSGKAWYKFW
*
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spliced messenger RNA

>Gchil8221.t1 ID=Gchil8221.t1|Name=Gchil8221.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1053bp|location=Sequence derived from alignment at tig00004384_pilon:725162..726563- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAACCCGTGTTCTGGTTGCGCGCCTTGCGGCGCGTGCGCTTTCCAC
TGCCGTCGCCTCCACGCCGGCCTCTAGGATTTCTCGTATTGCCACCTCGC
GTACTTTTGAAGCTGCTACGGCTGCCACGCGCTCTACTACTGCTCTTACG
TGCGTTGCGGCTGCCGGTCTAGGCGCTTCCGTTGTGTATGCTGCTTCGCC
GGCCGATGAGCAGGTTAGTAAGGAGGAAATTGCCGCTGCTGCTGCGGCAA
TTCACGGCATCCTCGACAATGACGATGAAGATCTTGGACCCACGCTTGTT
CGGCTGGCGTGGCACGCTAGTGGTACATATGACAAGGACTCGGGCAGTGG
TGGGAGTGAAGGCGCCACCATGCGCTTTAAACCGGAAAGCGAGCATGGCG
CCAATGCCGGATTGCATGTCGCGCGCAATGCTCTGGAGCCGATTAAGATT
CTCTTCCCAAATTTCACATATGCAGATCTTTGGACGTTAGCAGGAGCGGT
GGCAATCGAACATATGGGCGGGCCAAACATTGTATGGAGACCTGGTCGAC
GCGATGCTGCAGATGAGAGTGAGTGTACACCAGATGGCCGTCTTCCCGAC
GCGGACAAGGGCAAGGTCGGGGCAACCATTCGACATGTTCGTGAAATATT
CACGCGACAAGGATTCGACGATCGTGAGATGGTGGCGCTTATTGGCGCCC
ATGCGCTTGGAAGATGTCATACTGATCGTAGTGGATATACAGGCCCTTGG
ACGCGTGCACCAACAACTTTTTCAAACCTCTACTACAAGGAACTTTTGGA
AAACATATGGACTCTCAAGCAATGGGACGGTCCCGATCAGTTTGAGGATC
CCTCGGGAGATTTGATGATGCTTCCTTCTGACATGGCACTAATCTGGGAC
AAGAAATTCAGGAAGTACGTGGTGGAATTTGCGAATAATGAGGACGAATT
CTTTAAAGCGTTTGCCTCAGCGTTTCAGAAGTTAGAGGAGAATGGGGTAA
AGGCGTTTGAGGGACAGGGTGGCTCTGGGAAGGCTTGGTACAAGTTCTGG
TAG
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protein sequence of Gchil8221.t1

>Gchil8221.t1 ID=Gchil8221.t1|Name=Gchil8221.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=351bp
MATRVLVARLAARALSTAVASTPASRISRIATSRTFEAATAATRSTTALT
CVAAAGLGASVVYAASPADEQVSKEEIAAAAAAIHGILDNDDEDLGPTLV
RLAWHASGTYDKDSGSGGSEGATMRFKPESEHGANAGLHVARNALEPIKI
LFPNFTYADLWTLAGAVAIEHMGGPNIVWRPGRRDAADESECTPDGRLPD
ADKGKVGATIRHVREIFTRQGFDDREMVALIGAHALGRCHTDRSGYTGPW
TRAPTTFSNLYYKELLENIWTLKQWDGPDQFEDPSGDLMMLPSDMALIWD
KKFRKYVVEFANNEDEFFKAFASAFQKLEENGVKAFEGQGGSGKAWYKFW
*
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mRNA from alignment at tig00004384_pilon:725162..726563-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil8221.t1 ID=Gchil8221.t1|Name=Gchil8221.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1402bp|location=Sequence derived from alignment at tig00004384_pilon:725162..726563- (Gracilaria chilensis NLEC103_M9 male)
ATGGCAACCCGTGTTCTGGTTGCGCGCCTTGCGGCGCGTGCGCTTTCCAC
TGCCGTCGCCTCCACGCCGGCCTCTAGGATTTCTCGTATTGCCACCTCGC
GTACTTTTGAAGCTGCTACGGCTGCCACGCGCTCTACTACTGCTCTTACG
TGCGTTGCGGCTGCCGGTCTAGGCGCTTCCGTTGTGTATGCTGCTTCGCC
GGCCGATGAGCAGGTTAGTAAGGAGGAAATTGCCGCTGCTGCTGCGGCAA
TTCACGGCATCCTCGACAATGACGATGAAGATCTTGGACCCACGCTTGTT
CGGCTGGCGTGGCACGCTAGTGGTACATATGACAAGGACTCGGGCAGTGG
TGGGAGTGAAGGCGCCACCATGCGCTTTAAACCGGAAAGCGAGCATGGCG
CCAATGCCGGATTGCATGTCGCGCGCAATGCTCTGGAGCCGATTAAGATT
CTCTTCCCAAATTTCACGTGAGTTTGACATTGATCAAGTTTACTGCCCTT
GATGTTTAAATCACAAACGCTGACTTTGTCTTGATCCGTCTCTTCTGCCG
TACTGTTTATGATTTCCAATGCGTGTTGCATGTTTTGTTTCTGACGGAAA
TGAATTAATCCGAAAAGATATGCAGATCTTTGGACGGTACGTTGGCAAAT
GAACAAACACAGCGCTTAAAGCGTATGAAGCAGTAGTTGGTTGCAAACAA
CTAACCCCCAAAAACAATTGTATGTGTGATGTAGTTAGCAGGAGCGGTGG
CAATCGAACATATGGGCGGGCCAAACATTGTATGGAGACCTGGTCGACGC
GATGCTGCAGATGAGAGTGAGTGTACACCAGATGGCCGTCTTCCCGACGC
GGACAAGGGCAAGGTCGGGGCAACCATTCGACATGTTCGTGAAATATTCA
CGCGACAAGGATTCGACGATCGTGAGATGGTGGCGCTTATTGGCGCCCAT
GCGCTTGGAAGATGTCATACTGATCGTAGTGGATATACAGGCCCTTGGAC
GCGTGCACCAACAACTTTTTCAAACCTCTACTACAAGGAACTTTTGGAAA
ACATATGGACTCTCAAGCAATGGGACGGTCCCGATCAGTTTGAGGGTAAG
TGAGTAATTTGGCCAGTTGGCTACAATTGCGTTTTTAATTGAAACAGATA
ACCTAACGATTCTGTTGTTACAAATGTTTGCTTACTTGCCTGACAGATCC
CTCGGGAGATTTGATGATGCTTCCTTCTGACATGGCACTAATCTGGGACA
AGAAATTCAGGAAGTACGTGGTGGAATTTGCGAATAATGAGGACGAATTC
TTTAAAGCGTTTGCCTCAGCGTTTCAGAAGTTAGAGGAGAATGGGGTAAA
GGCGTTTGAGGGACAGGGTGGCTCTGGGAAGGCTTGGTACAAGTTCTGGT
AG
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Coding sequence (CDS) from alignment at tig00004384_pilon:725162..726563-

>Gchil8221.t1 ID=Gchil8221.t1|Name=Gchil8221.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1053bp|location=Sequence derived from alignment at tig00004384_pilon:725162..726563- (Gracilaria chilensis NLEC103_M9 male)
ATGGCAACCCGTGTTCTGGTTGCGCGCCTTGCGGCGCGTGCGCTTTCCAC
TGCCGTCGCCTCCACGCCGGCCTCTAGGATTTCTCGTATTGCCACCTCGC
GTACTTTTGAAGCTGCTACGGCTGCCACGCGCTCTACTACTGCTCTTACG
TGCGTTGCGGCTGCCGGTCTAGGCGCTTCCGTTGTGTATGCTGCTTCGCC
GGCCGATGAGCAGGTTAGTAAGGAGGAAATTGCCGCTGCTGCTGCGGCAA
TTCACGGCATCCTCGACAATGACGATGAAGATCTTGGACCCACGCTTGTT
CGGCTGGCGTGGCACGCTAGTGGTACATATGACAAGGACTCGGGCAGTGG
TGGGAGTGAAGGCGCCACCATGCGCTTTAAACCGGAAAGCGAGCATGGCG
CCAATGCCGGATTGCATGTCGCGCGCAATGCTCTGGAGCCGATTAAGATT
CTCTTCCCAAATTTCACATATGCAGATCTTTGGACGTTAGCAGGAGCGGT
GGCAATCGAACATATGGGCGGGCCAAACATTGTATGGAGACCTGGTCGAC
GCGATGCTGCAGATGAGAGTGAGTGTACACCAGATGGCCGTCTTCCCGAC
GCGGACAAGGGCAAGGTCGGGGCAACCATTCGACATGTTCGTGAAATATT
CACGCGACAAGGATTCGACGATCGTGAGATGGTGGCGCTTATTGGCGCCC
ATGCGCTTGGAAGATGTCATACTGATCGTAGTGGATATACAGGCCCTTGG
ACGCGTGCACCAACAACTTTTTCAAACCTCTACTACAAGGAACTTTTGGA
AAACATATGGACTCTCAAGCAATGGGACGGTCCCGATCAGTTTGAGGATC
CCTCGGGAGATTTGATGATGCTTCCTTCTGACATGGCACTAATCTGGGAC
AAGAAATTCAGGAAGTACGTGGTGGAATTTGCGAATAATGAGGACGAATT
CTTTAAAGCGTTTGCCTCAGCGTTTCAGAAGTTAGAGGAGAATGGGGTAA
AGGCGTTTGAGGGACAGGGTGGCTCTGGGAAGGCTTGGTACAAGTTCTGG
TAG
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