Gchil8220.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil8220.t1
Unique Name	Gchil8220.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	365

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004384_pilon	contig	tig00004384_pilon:723327..724421 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	3712.Bo4g183110.1
PFAMs	ArfGap
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K12493
KEGG Pathway	ko04144,map04144
GOs	GO:0000003,GO:0001101,GO:0003006,GO:0007275,GO:0008150,GO:0009555,GO:0009719,GO:0009725,GO:0009737,GO:0009790,GO:0009791,GO:0009793,GO:0010033,GO:0010154,GO:0022414,GO:0032501,GO:0032502,GO:0033993,GO:0042221,GO:0048229,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0050896,GO:0061458,GO:0097305,GO:1901700
Evalue	5.73e-36
EggNOG OGs	COG5347@1\|root,KOG0706@2759\|Eukaryota,37IHX@33090\|Viridiplantae,3G9G7@35493\|Streptophyta,3HYSG@3699\|Brassicales
Description	Putative GTP-ase activating proteins for the small GTPase, ARF
COG category	T
BRITE	ko00000,ko00001,ko04131

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil8220	Gchil8220	Gracilaria chilensis NLEC103_M9 male	gene	tig00004384_pilon 723327..724421 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8220.t1.stop1	Gchil8220.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004384_pilon 723327..723329 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8220.t1.CDS1	Gchil8220.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004384_pilon 723327..724421 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8220.t1.exon1	Gchil8220.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004384_pilon 723327..724421 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8220.t1.start1	Gchil8220.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004384_pilon 724419..724421 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8220.t1	Gchil8220.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004384_pilon 723327..724421 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004384_pilon:723327..724421-
coding sequence from alignment at tig00004384_pilon:723327..724421-

mRNA sequence

>Gchil8220.t1 ID=Gchil8220.t1|Name=Gchil8220.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=365bp
MAPPVASEIAHDSKIVLRRLCTRLDNKTCFDCSAKNPTWASTRFGVFICL
DCSGSHRNLGTHITFVRSASMDTWSKQDLSRMINGGNAKARNFWKDHGWH
DFSGFHADKYTGRIANSYKSTLERLVVDTEPSFDASQLSNGLAAVSVAEQ
PTTQSATVKINPEAVKTPQMPLTVDATPKPKRPSSITVSAPVAADASITS
SRRPTRKSGGLGARRKAAAANSSSTTIDWTKVGSDVPPGPPLPKLPPKPK
VQPQAKQVATTSMSSEQYAERFRGKKAISSDDFAPQNGLTSTQDYSQRYS
NVPSLSSSELFHTPSTFPSNTQPAVEDGIAGLADDFIRAASEGVAQAADE
VSTAFSDFLNKGYA*

spliced messenger RNA

>Gchil8220.t1 ID=Gchil8220.t1|Name=Gchil8220.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1095bp|location=Sequence derived from alignment at tig00004384_pilon:723327..724421- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCACCTCCTGTGGCTTCGGAAATCGCGCATGACTCAAAGATTGTGTT
GCGCCGCCTTTGCACCCGTCTCGATAATAAGACTTGTTTCGACTGCTCCG
CTAAAAACCCCACGTGGGCCTCAACTCGTTTCGGAGTCTTCATATGTCTT
GATTGTTCGGGTAGTCATCGCAACCTGGGAACCCATATCACCTTTGTTCG
TTCTGCCTCCATGGACACCTGGTCAAAACAGGATCTGTCAAGAATGATTA
ATGGCGGCAATGCCAAGGCCAGAAACTTTTGGAAGGACCATGGTTGGCAT
GATTTTTCAGGCTTCCATGCCGACAAGTACACTGGTCGTATTGCCAATTC
GTACAAATCTACATTGGAGCGACTTGTGGTAGATACCGAACCCAGTTTTG
ATGCATCACAGCTTTCGAACGGCCTGGCGGCCGTTTCGGTGGCGGAACAG
CCAACAACTCAATCCGCCACCGTCAAGATCAACCCGGAAGCTGTCAAAAC
ACCGCAAATGCCACTCACCGTCGACGCGACACCGAAACCCAAACGCCCTT
CTTCCATCACTGTTTCCGCCCCTGTCGCCGCGGATGCTTCCATCACCTCC
TCTCGAAGACCCACAAGAAAGTCCGGTGGACTGGGCGCAAGACGGAAAGC
CGCTGCCGCCAACAGCTCTTCCACCACCATTGACTGGACAAAAGTTGGGT
CCGATGTGCCGCCCGGACCACCACTTCCAAAGCTTCCGCCAAAGCCAAAA
GTTCAGCCTCAAGCAAAGCAAGTCGCTACTACATCCATGAGTTCCGAACA
GTATGCCGAAAGATTCCGTGGTAAGAAGGCTATATCATCCGATGATTTTG
CCCCTCAGAATGGCCTGACTTCCACTCAAGATTATTCTCAACGCTACTCA
AATGTTCCATCGCTCTCTTCGTCGGAGCTTTTCCACACGCCTTCGACTTT
TCCTTCAAATACTCAGCCCGCTGTCGAGGATGGAATAGCCGGTCTTGCTG
ATGATTTCATTAGAGCGGCTTCGGAGGGGGTTGCTCAGGCCGCCGATGAG
GTTTCCACCGCCTTTTCTGACTTCCTTAACAAAGGATACGCGTAA

protein sequence of Gchil8220.t1

>Gchil8220.t1 ID=Gchil8220.t1|Name=Gchil8220.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=365bp
MAPPVASEIAHDSKIVLRRLCTRLDNKTCFDCSAKNPTWASTRFGVFICL
DCSGSHRNLGTHITFVRSASMDTWSKQDLSRMINGGNAKARNFWKDHGWH
DFSGFHADKYTGRIANSYKSTLERLVVDTEPSFDASQLSNGLAAVSVAEQ
PTTQSATVKINPEAVKTPQMPLTVDATPKPKRPSSITVSAPVAADASITS
SRRPTRKSGGLGARRKAAAANSSSTTIDWTKVGSDVPPGPPLPKLPPKPK
VQPQAKQVATTSMSSEQYAERFRGKKAISSDDFAPQNGLTSTQDYSQRYS
NVPSLSSSELFHTPSTFPSNTQPAVEDGIAGLADDFIRAASEGVAQAADE
VSTAFSDFLNKGYA*

mRNA from alignment at tig00004384_pilon:723327..724421-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil8220.t1 ID=Gchil8220.t1|Name=Gchil8220.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1095bp|location=Sequence derived from alignment at tig00004384_pilon:723327..724421- (Gracilaria chilensis NLEC103_M9 male)
ATGGCACCTCCTGTGGCTTCGGAAATCGCGCATGACTCAAAGATTGTGTT
GCGCCGCCTTTGCACCCGTCTCGATAATAAGACTTGTTTCGACTGCTCCG
CTAAAAACCCCACGTGGGCCTCAACTCGTTTCGGAGTCTTCATATGTCTT
GATTGTTCGGGTAGTCATCGCAACCTGGGAACCCATATCACCTTTGTTCG
TTCTGCCTCCATGGACACCTGGTCAAAACAGGATCTGTCAAGAATGATTA
ATGGCGGCAATGCCAAGGCCAGAAACTTTTGGAAGGACCATGGTTGGCAT
GATTTTTCAGGCTTCCATGCCGACAAGTACACTGGTCGTATTGCCAATTC
GTACAAATCTACATTGGAGCGACTTGTGGTAGATACCGAACCCAGTTTTG
ATGCATCACAGCTTTCGAACGGCCTGGCGGCCGTTTCGGTGGCGGAACAG
CCAACAACTCAATCCGCCACCGTCAAGATCAACCCGGAAGCTGTCAAAAC
ACCGCAAATGCCACTCACCGTCGACGCGACACCGAAACCCAAACGCCCTT
CTTCCATCACTGTTTCCGCCCCTGTCGCCGCGGATGCTTCCATCACCTCC
TCTCGAAGACCCACAAGAAAGTCCGGTGGACTGGGCGCAAGACGGAAAGC
CGCTGCCGCCAACAGCTCTTCCACCACCATTGACTGGACAAAAGTTGGGT
CCGATGTGCCGCCCGGACCACCACTTCCAAAGCTTCCGCCAAAGCCAAAA
GTTCAGCCTCAAGCAAAGCAAGTCGCTACTACATCCATGAGTTCCGAACA
GTATGCCGAAAGATTCCGTGGTAAGAAGGCTATATCATCCGATGATTTTG
CCCCTCAGAATGGCCTGACTTCCACTCAAGATTATTCTCAACGCTACTCA
AATGTTCCATCGCTCTCTTCGTCGGAGCTTTTCCACACGCCTTCGACTTT
TCCTTCAAATACTCAGCCCGCTGTCGAGGATGGAATAGCCGGTCTTGCTG
ATGATTTCATTAGAGCGGCTTCGGAGGGGGTTGCTCAGGCCGCCGATGAG
GTTTCCACCGCCTTTTCTGACTTCCTTAACAAAGGATACGCGTAA

Coding sequence (CDS) from alignment at tig00004384_pilon:723327..724421-

>Gchil8220.t1 ID=Gchil8220.t1|Name=Gchil8220.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1095bp|location=Sequence derived from alignment at tig00004384_pilon:723327..724421- (Gracilaria chilensis NLEC103_M9 male)
ATGGCACCTCCTGTGGCTTCGGAAATCGCGCATGACTCAAAGATTGTGTT
GCGCCGCCTTTGCACCCGTCTCGATAATAAGACTTGTTTCGACTGCTCCG
CTAAAAACCCCACGTGGGCCTCAACTCGTTTCGGAGTCTTCATATGTCTT
GATTGTTCGGGTAGTCATCGCAACCTGGGAACCCATATCACCTTTGTTCG
TTCTGCCTCCATGGACACCTGGTCAAAACAGGATCTGTCAAGAATGATTA
ATGGCGGCAATGCCAAGGCCAGAAACTTTTGGAAGGACCATGGTTGGCAT
GATTTTTCAGGCTTCCATGCCGACAAGTACACTGGTCGTATTGCCAATTC
GTACAAATCTACATTGGAGCGACTTGTGGTAGATACCGAACCCAGTTTTG
ATGCATCACAGCTTTCGAACGGCCTGGCGGCCGTTTCGGTGGCGGAACAG
CCAACAACTCAATCCGCCACCGTCAAGATCAACCCGGAAGCTGTCAAAAC
ACCGCAAATGCCACTCACCGTCGACGCGACACCGAAACCCAAACGCCCTT
CTTCCATCACTGTTTCCGCCCCTGTCGCCGCGGATGCTTCCATCACCTCC
TCTCGAAGACCCACAAGAAAGTCCGGTGGACTGGGCGCAAGACGGAAAGC
CGCTGCCGCCAACAGCTCTTCCACCACCATTGACTGGACAAAAGTTGGGT
CCGATGTGCCGCCCGGACCACCACTTCCAAAGCTTCCGCCAAAGCCAAAA
GTTCAGCCTCAAGCAAAGCAAGTCGCTACTACATCCATGAGTTCCGAACA
GTATGCCGAAAGATTCCGTGGTAAGAAGGCTATATCATCCGATGATTTTG
CCCCTCAGAATGGCCTGACTTCCACTCAAGATTATTCTCAACGCTACTCA
AATGTTCCATCGCTCTCTTCGTCGGAGCTTTTCCACACGCCTTCGACTTT
TCCTTCAAATACTCAGCCCGCTGTCGAGGATGGAATAGCCGGTCTTGCTG
ATGATTTCATTAGAGCGGCTTCGGAGGGGGTTGCTCAGGCCGCCGATGAG
GTTTCCACCGCCTTTTCTGACTTCCTTAACAAAGGATACGCGTAA