Gchil8211.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil8211.t1
Unique Name	Gchil8211.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	304

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004384_pilon	contig	tig00004384_pilon:693691..694602 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	4432.XP_010259630.1
PFAMs	KTI12
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K15456
GOs	GO:0001510,GO:0002097,GO:0002098,GO:0003674,GO:0005488,GO:0005515,GO:0005516,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006355,GO:0006357,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0007275,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009653,GO:0009888,GO:0009889,GO:0009933,GO:0009987,GO:0010449,GO:0010467,GO:0010468,GO:0010556,GO:0016070,GO:0019219,GO:0019222,GO:0022622,GO:0030488,GO:0031323,GO:0031326,GO:0032259,GO:0032501,GO:0032502,GO:0032991,GO:0033588,GO:0034470,GO:0034641,GO:0034660,GO:0035266,GO:0040007,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0048364,GO:0048366,GO:0048367,GO:0048507,GO:0048532,GO:0048589,GO:0048731,GO:0048827,GO:0048856,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0071704,GO:0080090,GO:0080178,GO:0090304,GO:0099402,GO:1901360,GO:1903506,GO:2000112,GO:2001141
Evalue	4.38e-42
EggNOG OGs	COG4088@1\|root,KOG3062@2759\|Eukaryota,37JMR@33090\|Viridiplantae,3GBC9@35493\|Streptophyta
Description	Protein KTI12 homolog
COG category	F
BRITE	ko00000,ko03016

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil8211	Gchil8211	Gracilaria chilensis NLEC103_M9 male	gene	tig00004384_pilon 693691..694602 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8211.t1.start1	Gchil8211.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004384_pilon 693691..693693 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8211.t1.CDS1	Gchil8211.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004384_pilon 693691..694602 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8211.t1.exon1	Gchil8211.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004384_pilon 693691..694602 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8211.t1.stop1	Gchil8211.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004384_pilon 694600..694602 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8211.t1	Gchil8211.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004384_pilon 693691..694602 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004384_pilon:693691..694602+
coding sequence from alignment at tig00004384_pilon:693691..694602+

mRNA sequence

>Gchil8211.t1 ID=Gchil8211.t1|Name=Gchil8211.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=304bp
MALVLLCGFPASGKSTVADTFANLLATEGKQVHIIRDGIDSLNPESKEVI
EENKLIESFNSRQALYNSSTTEKKTRARLRAATERALSASNLVICDSLNY
IKGFRYEMYCTAKTSSIKYCVIHCESTLQQCLERDANRATRGEDSYGEQL
LRAIVQRFEEPCETNRWDSPFFKINTTQDNWKAQLGTVRDTMSSTTQTLA
PTMATKQPRKQGADTLGVLDRISRETEAMLIREIQSGKGVGDHINVIGAS
KSVRLERKPKIAQLRNIRRSYLNLARMHPPQGCSTHELLDEYIEYINAQL
RTA*

spliced messenger RNA

>Gchil8211.t1 ID=Gchil8211.t1|Name=Gchil8211.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=912bp|location=Sequence derived from alignment at tig00004384_pilon:693691..694602+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCACTCGTGCTCCTTTGCGGTTTCCCGGCAAGTGGAAAATCCACAGT
TGCTGACACTTTTGCTAACCTACTCGCTACGGAAGGAAAGCAAGTCCATA
TCATTCGCGATGGCATCGATTCACTCAACCCCGAAAGCAAGGAAGTCATT
GAAGAAAATAAGCTGATTGAAAGTTTCAACTCTCGCCAAGCGCTCTACAA
CAGTTCTACAACTGAGAAGAAGACCAGAGCCCGCTTGCGAGCAGCAACAG
AGCGTGCCCTTAGTGCTTCAAACTTAGTCATATGTGACAGTCTGAACTAT
ATCAAAGGTTTTCGCTACGAGATGTACTGCACGGCAAAGACGAGTAGCAT
TAAATATTGTGTCATTCACTGTGAGTCCACCCTTCAACAATGCCTCGAGC
GCGATGCCAATAGAGCCACACGAGGCGAGGACTCATATGGAGAGCAATTG
CTAAGGGCAATTGTTCAACGCTTTGAAGAACCATGCGAAACCAACCGCTG
GGACAGCCCATTTTTTAAAATTAACACCACTCAGGACAACTGGAAAGCGC
AATTGGGAACGGTGCGAGACACCATGTCCAGTACAACCCAAACCTTAGCT
CCCACCATGGCAACAAAACAACCTCGAAAACAGGGAGCGGATACTTTGGG
TGTTTTGGATAGAATCTCGCGCGAAACCGAAGCGATGCTAATTCGAGAGA
TTCAGAGCGGTAAAGGTGTTGGGGATCATATTAATGTAATCGGGGCCTCA
AAATCTGTTCGATTGGAGCGAAAACCCAAGATCGCCCAGCTGAGGAATAT
AAGACGTTCGTATCTCAACCTTGCAAGAATGCACCCTCCTCAAGGATGTT
CGACACATGAACTTCTGGACGAGTATATAGAATATATCAATGCTCAACTT
CGAACTGCGTGA

protein sequence of Gchil8211.t1

>Gchil8211.t1 ID=Gchil8211.t1|Name=Gchil8211.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=304bp
MALVLLCGFPASGKSTVADTFANLLATEGKQVHIIRDGIDSLNPESKEVI
EENKLIESFNSRQALYNSSTTEKKTRARLRAATERALSASNLVICDSLNY
IKGFRYEMYCTAKTSSIKYCVIHCESTLQQCLERDANRATRGEDSYGEQL
LRAIVQRFEEPCETNRWDSPFFKINTTQDNWKAQLGTVRDTMSSTTQTLA
PTMATKQPRKQGADTLGVLDRISRETEAMLIREIQSGKGVGDHINVIGAS
KSVRLERKPKIAQLRNIRRSYLNLARMHPPQGCSTHELLDEYIEYINAQL
RTA*

mRNA from alignment at tig00004384_pilon:693691..694602+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil8211.t1 ID=Gchil8211.t1|Name=Gchil8211.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=912bp|location=Sequence derived from alignment at tig00004384_pilon:693691..694602+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCACTCGTGCTCCTTTGCGGTTTCCCGGCAAGTGGAAAATCCACAGT
TGCTGACACTTTTGCTAACCTACTCGCTACGGAAGGAAAGCAAGTCCATA
TCATTCGCGATGGCATCGATTCACTCAACCCCGAAAGCAAGGAAGTCATT
GAAGAAAATAAGCTGATTGAAAGTTTCAACTCTCGCCAAGCGCTCTACAA
CAGTTCTACAACTGAGAAGAAGACCAGAGCCCGCTTGCGAGCAGCAACAG
AGCGTGCCCTTAGTGCTTCAAACTTAGTCATATGTGACAGTCTGAACTAT
ATCAAAGGTTTTCGCTACGAGATGTACTGCACGGCAAAGACGAGTAGCAT
TAAATATTGTGTCATTCACTGTGAGTCCACCCTTCAACAATGCCTCGAGC
GCGATGCCAATAGAGCCACACGAGGCGAGGACTCATATGGAGAGCAATTG
CTAAGGGCAATTGTTCAACGCTTTGAAGAACCATGCGAAACCAACCGCTG
GGACAGCCCATTTTTTAAAATTAACACCACTCAGGACAACTGGAAAGCGC
AATTGGGAACGGTGCGAGACACCATGTCCAGTACAACCCAAACCTTAGCT
CCCACCATGGCAACAAAACAACCTCGAAAACAGGGAGCGGATACTTTGGG
TGTTTTGGATAGAATCTCGCGCGAAACCGAAGCGATGCTAATTCGAGAGA
TTCAGAGCGGTAAAGGTGTTGGGGATCATATTAATGTAATCGGGGCCTCA
AAATCTGTTCGATTGGAGCGAAAACCCAAGATCGCCCAGCTGAGGAATAT
AAGACGTTCGTATCTCAACCTTGCAAGAATGCACCCTCCTCAAGGATGTT
CGACACATGAACTTCTGGACGAGTATATAGAATATATCAATGCTCAACTT
CGAACTGCGTGA

Coding sequence (CDS) from alignment at tig00004384_pilon:693691..694602+

>Gchil8211.t1 ID=Gchil8211.t1|Name=Gchil8211.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=912bp|location=Sequence derived from alignment at tig00004384_pilon:693691..694602+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCACTCGTGCTCCTTTGCGGTTTCCCGGCAAGTGGAAAATCCACAGT
TGCTGACACTTTTGCTAACCTACTCGCTACGGAAGGAAAGCAAGTCCATA
TCATTCGCGATGGCATCGATTCACTCAACCCCGAAAGCAAGGAAGTCATT
GAAGAAAATAAGCTGATTGAAAGTTTCAACTCTCGCCAAGCGCTCTACAA
CAGTTCTACAACTGAGAAGAAGACCAGAGCCCGCTTGCGAGCAGCAACAG
AGCGTGCCCTTAGTGCTTCAAACTTAGTCATATGTGACAGTCTGAACTAT
ATCAAAGGTTTTCGCTACGAGATGTACTGCACGGCAAAGACGAGTAGCAT
TAAATATTGTGTCATTCACTGTGAGTCCACCCTTCAACAATGCCTCGAGC
GCGATGCCAATAGAGCCACACGAGGCGAGGACTCATATGGAGAGCAATTG
CTAAGGGCAATTGTTCAACGCTTTGAAGAACCATGCGAAACCAACCGCTG
GGACAGCCCATTTTTTAAAATTAACACCACTCAGGACAACTGGAAAGCGC
AATTGGGAACGGTGCGAGACACCATGTCCAGTACAACCCAAACCTTAGCT
CCCACCATGGCAACAAAACAACCTCGAAAACAGGGAGCGGATACTTTGGG
TGTTTTGGATAGAATCTCGCGCGAAACCGAAGCGATGCTAATTCGAGAGA
TTCAGAGCGGTAAAGGTGTTGGGGATCATATTAATGTAATCGGGGCCTCA
AAATCTGTTCGATTGGAGCGAAAACCCAAGATCGCCCAGCTGAGGAATAT
AAGACGTTCGTATCTCAACCTTGCAAGAATGCACCCTCCTCAAGGATGTT
CGACACATGAACTTCTGGACGAGTATATAGAATATATCAATGCTCAACTT
CGAACTGCGTGA