Gchil8210.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil8210.t1
Unique NameGchil8210.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length166
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004384_piloncontigtig00004384_pilon:692334..693051 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703951.1
Preferred nameUBE2E3
PFAMsUQ_con
Max annot lvl2759|Eukaryota
KEGG koko:K20217
KEGG Pathwayko04120,map04120
GOsGO:0000151,GO:0000209,GO:0003674,GO:0003824,GO:0004842,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006325,GO:0006464,GO:0006508,GO:0006511,GO:0006513,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007346,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0010390,GO:0010498,GO:0010564,GO:0010876,GO:0016043,GO:0016567,GO:0016569,GO:0016570,GO:0016574,GO:0016740,GO:0019538,GO:0019787,GO:0019915,GO:0019941,GO:0030163,GO:0031145,GO:0031974,GO:0031981,GO:0032020,GO:0032446,GO:0032991,GO:0033036,GO:0033523,GO:0033554,GO:0036211,GO:0042296,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045787,GO:0045931,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051235,GO:0051276,GO:0051603,GO:0051716,GO:0051726,GO:0061631,GO:0061650,GO:0065007,GO:0065008,GO:0070013,GO:0070534,GO:0070647,GO:0070936,GO:0070979,GO:0071704,GO:0071840,GO:0090068,GO:0140096,GO:1900087,GO:1901564,GO:1901565,GO:1901575,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902494,GO:1902806,GO:1902808,GO:1990234,GO:2000045
Evalue8.36e-74
EggNOG OGsCOG5078@1|root,KOG0417@2759|Eukaryota
EC2.3.2.23
Descriptionprotein modification by small protein conjugation
COG categoryO
BRITEko00000,ko00001,ko01000,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8210Gchil8210Gracilaria chilensis NLEC103_M9 malegenetig00004384_pilon 692334..693051 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8210.t1Gchil8210.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004384_pilon 692334..693051 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8210.t1.stop1Gchil8210.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004384_pilon 692334..692336 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8210.t1.CDS1Gchil8210.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004384_pilon 692334..692638 -
Gchil8210.t1.CDS2Gchil8210.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004384_pilon 692738..692865 -
Gchil8210.t1.CDS3Gchil8210.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004384_pilon 692987..693051 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8210.t1.exon1Gchil8210.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004384_pilon 692334..692638 -
Gchil8210.t1.exon2Gchil8210.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004384_pilon 692738..692865 -
Gchil8210.t1.exon3Gchil8210.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004384_pilon 692987..693051 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8210.t1.intron1Gchil8210.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004384_pilon 692639..692737 -
Gchil8210.t1.intron2Gchil8210.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004384_pilon 692866..692986 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8210.t1.start1Gchil8210.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004384_pilon 693049..693051 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil8210.t1 ID=Gchil8210.t1|Name=Gchil8210.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=166bp
MSEAGPSDMSKWGTSLKGSARRIQKELKEIGSDPPLYCSAGPKGDNIYEW
VATIEGPEGSPYESGVFFLAIEFPKDYPFSPPQITFRTRIYHCNINSSGK
ICFLDSLNSMWSPAFTVANLLSAITGLLIDPNPHNPLVGSIAVQYLTDRR
THDETARDWTIRFAG*
back to top

spliced messenger RNA

>Gchil8210.t1 ID=Gchil8210.t1|Name=Gchil8210.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=498bp|location=Sequence derived from alignment at tig00004384_pilon:692334..693051- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCGAGGCTGGACCATCTGACATGTCAAAGTGGGGAACGAGCCTGAA
AGGCTCCGCGAGACGTATTCAAAAGGAACTGAAAGAAATAGGCAGCGATC
CGCCTTTGTATTGTTCTGCCGGACCAAAAGGTGACAACATCTATGAATGG
GTTGCAACAATCGAGGGCCCCGAAGGTTCTCCGTATGAGTCTGGCGTGTT
CTTCCTTGCAATTGAATTTCCAAAGGACTATCCGTTTTCCCCTCCGCAAA
TCACTTTTCGCACTCGCATATACCATTGTAATATAAATTCGTCAGGGAAA
ATATGCTTCTTGGACTCCTTGAACTCAATGTGGAGCCCAGCTTTTACTGT
CGCCAACCTGCTGAGCGCGATTACTGGTCTACTCATCGATCCAAATCCAC
ATAATCCGTTGGTAGGTTCCATTGCCGTTCAGTACTTGACAGATCGCAGA
ACGCATGACGAAACAGCTCGTGACTGGACAATACGATTTGCTGGATAG
back to top

protein sequence of Gchil8210.t1

>Gchil8210.t1 ID=Gchil8210.t1|Name=Gchil8210.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=166bp
MSEAGPSDMSKWGTSLKGSARRIQKELKEIGSDPPLYCSAGPKGDNIYEW
VATIEGPEGSPYESGVFFLAIEFPKDYPFSPPQITFRTRIYHCNINSSGK
ICFLDSLNSMWSPAFTVANLLSAITGLLIDPNPHNPLVGSIAVQYLTDRR
THDETARDWTIRFAG*
back to top

mRNA from alignment at tig00004384_pilon:692334..693051-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil8210.t1 ID=Gchil8210.t1|Name=Gchil8210.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=718bp|location=Sequence derived from alignment at tig00004384_pilon:692334..693051- (Gracilaria chilensis NLEC103_M9 male)
ATGAGCGAGGCTGGACCATCTGACATGTCAAAGTGGGGAACGAGCCTGAA
AGGCTCCGCGAGACGGTGAGTTTACTATGCATCACGCCTTACGCGCCCGT
CACCCTCACTATGTAATTTTCTCACCACATAGCAATTGCTTCCTCCTGCG
CGTTCTTCAACCTTTATGGTCTTACTCCAAGAAAAGTATTCAAAAGGAAC
TGAAAGAAATAGGCAGCGATCCGCCTTTGTATTGTTCTGCCGGACCAAAA
GGTGACAACATCTATGAATGGGTTGCAACAATCGAGGGCCCCGAAGGTTC
TCCGTATGAGTCTGGTAAGTTTTCTGGACAGACATTTGATCAACTACATG
GTTGGATTACACATCAATGTTGCTCTACTAGACCAATCGGAGTAATCTAA
CCATTCCATACAGGCGTGTTCTTCCTTGCAATTGAATTTCCAAAGGACTA
TCCGTTTTCCCCTCCGCAAATCACTTTTCGCACTCGCATATACCATTGTA
ATATAAATTCGTCAGGGAAAATATGCTTCTTGGACTCCTTGAACTCAATG
TGGAGCCCAGCTTTTACTGTCGCCAACCTGCTGAGCGCGATTACTGGTCT
ACTCATCGATCCAAATCCACATAATCCGTTGGTAGGTTCCATTGCCGTTC
AGTACTTGACAGATCGCAGAACGCATGACGAAACAGCTCGTGACTGGACA
ATACGATTTGCTGGATAG
back to top

Coding sequence (CDS) from alignment at tig00004384_pilon:692334..693051-

>Gchil8210.t1 ID=Gchil8210.t1|Name=Gchil8210.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=498bp|location=Sequence derived from alignment at tig00004384_pilon:692334..693051- (Gracilaria chilensis NLEC103_M9 male)
ATGAGCGAGGCTGGACCATCTGACATGTCAAAGTGGGGAACGAGCCTGAA
AGGCTCCGCGAGACGTATTCAAAAGGAACTGAAAGAAATAGGCAGCGATC
CGCCTTTGTATTGTTCTGCCGGACCAAAAGGTGACAACATCTATGAATGG
GTTGCAACAATCGAGGGCCCCGAAGGTTCTCCGTATGAGTCTGGCGTGTT
CTTCCTTGCAATTGAATTTCCAAAGGACTATCCGTTTTCCCCTCCGCAAA
TCACTTTTCGCACTCGCATATACCATTGTAATATAAATTCGTCAGGGAAA
ATATGCTTCTTGGACTCCTTGAACTCAATGTGGAGCCCAGCTTTTACTGT
CGCCAACCTGCTGAGCGCGATTACTGGTCTACTCATCGATCCAAATCCAC
ATAATCCGTTGGTAGGTTCCATTGCCGTTCAGTACTTGACAGATCGCAGA
ACGCATGACGAAACAGCTCGTGACTGGACAATACGATTTGCTGGATAG
back to top