Gchil8206.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil8206.t1
Unique NameGchil8206.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length385
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004384_piloncontigtig00004384_pilon:685884..687038 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708630.1
PFAMsCDP-OH_P_transf,Methyltransf_16
Max annot lvl2759|Eukaryota
KEGG rclassRC00002,RC00017,RC02894
KEGG koko:K00993,ko:K11304,ko:K21804,ko:K21806
KEGG ReactionR02057,R04920,R06364,R07384
KEGG Pathwayko00440,ko00564,ko00565,ko01100,ko01110,ko05166,map00440,map00564,map00565,map01100,map01110,map05166
KEGG ModuleM00092
Evalue3.98e-62
EggNOG OGsCOG5050@1|root,KOG2793@1|root,KOG2793@2759|Eukaryota,KOG2877@2759|Eukaryota
EC2.3.1.48,2.7.8.1
DescriptionBelongs to the CDP-alcohol phosphatidyltransferase class-I family
COG categoryI
BRITEko00000,ko00001,ko00002,ko01000,ko03019,ko03036,ko03110
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8206Gchil8206Gracilaria chilensis NLEC103_M9 malegenetig00004384_pilon 685884..687038 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8206.t1.stop1Gchil8206.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004384_pilon 685884..685886 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8206.t1.CDS1Gchil8206.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004384_pilon 685884..687038 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8206.t1.exon1Gchil8206.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004384_pilon 685884..687038 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8206.t1.start1Gchil8206.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004384_pilon 687036..687038 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8206.t1Gchil8206.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004384_pilon 685884..687038 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil8206.t1 ID=Gchil8206.t1|Name=Gchil8206.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=385bp
MKTTEWWYVPQLHNTHVEALRRYKYSGEDRSVLRRYVMNDVYERVVYAFP
PWVAPNSITLGGLLLVVLSHAQLLYYSVDLSRAAPRGAYALAAITLFSYM
VLDNLDGKQARRTNSSSALGQLFDHGCDALNVTLSGMSMLAAMQAGCDGE
SMLLLLVLGHAMLFMATVEEYVTGSMVLRAINGPNEGIVLLCVMYALTAA
AGPSVWHRRVHDAIALRRVATAMALLASTHAVVGNIIGMVQHARRRGLHA
RHALCNALQLSQPLLLHSALFLGTAVAAPRVFARCGVALMWMAGAAMFDV
VTRVMLAHLARCEFPRASPLLVPAAVACGAVVGAERGVVGMCVAHAVVAG
ALGGAAAYNAWRACCVLRQLCDAMRVRCFSLKRG*
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spliced messenger RNA

>Gchil8206.t1 ID=Gchil8206.t1|Name=Gchil8206.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1155bp|location=Sequence derived from alignment at tig00004384_pilon:685884..687038- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGACGACCGAATGGTGGTACGTGCCGCAGCTGCACAACACGCACGT
CGAGGCGTTGCGAAGGTACAAGTATAGCGGAGAAGATCGATCGGTGCTGC
GGCGTTATGTGATGAACGACGTGTACGAACGCGTGGTATACGCGTTTCCG
CCATGGGTAGCTCCAAACTCCATCACGCTGGGCGGCTTGTTGTTGGTGGT
GCTGTCGCACGCACAGTTGCTTTACTATAGCGTGGATCTGTCGCGCGCGG
CGCCGCGCGGCGCGTATGCGCTGGCGGCCATCACGCTGTTCAGTTACATG
GTGCTGGACAATCTGGACGGGAAGCAGGCGCGACGCACCAACAGCTCGTC
GGCGCTGGGACAGCTGTTTGACCACGGCTGCGACGCGCTCAACGTGACGC
TATCGGGCATGAGCATGCTGGCCGCCATGCAGGCGGGCTGCGACGGCGAG
TCCATGCTGCTGTTACTCGTGCTGGGACACGCCATGCTGTTCATGGCCAC
GGTGGAGGAGTATGTGACGGGCAGCATGGTGCTGCGCGCCATCAACGGAC
CCAACGAGGGCATTGTGCTGCTGTGCGTCATGTACGCGCTCACAGCCGCC
GCCGGACCGTCTGTGTGGCACCGTCGCGTACATGACGCCATCGCGTTGCG
TCGCGTCGCAACGGCAATGGCGCTACTGGCCAGCACGCACGCCGTGGTCG
GCAACATAATCGGTATGGTACAACATGCGCGTCGGCGCGGTTTGCACGCA
CGCCACGCACTTTGCAACGCGTTGCAACTGTCGCAACCGTTGTTACTACA
TTCGGCGCTGTTTCTGGGCACGGCGGTTGCGGCGCCGCGCGTGTTCGCGC
GCTGCGGTGTGGCACTCATGTGGATGGCTGGTGCCGCTATGTTCGACGTG
GTGACGCGAGTCATGTTGGCGCATTTGGCACGGTGTGAGTTCCCGCGCGC
ATCACCGCTGCTTGTGCCCGCCGCCGTGGCTTGCGGCGCCGTCGTGGGCG
CGGAGCGCGGCGTGGTTGGCATGTGTGTGGCGCACGCGGTTGTGGCGGGC
GCGCTTGGCGGCGCCGCCGCGTATAACGCATGGAGAGCGTGTTGTGTGTT
GCGTCAGTTGTGCGACGCGATGCGCGTGCGCTGCTTCTCGCTAAAGCGCG
GGTAA
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protein sequence of Gchil8206.t1

>Gchil8206.t1 ID=Gchil8206.t1|Name=Gchil8206.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=385bp
MKTTEWWYVPQLHNTHVEALRRYKYSGEDRSVLRRYVMNDVYERVVYAFP
PWVAPNSITLGGLLLVVLSHAQLLYYSVDLSRAAPRGAYALAAITLFSYM
VLDNLDGKQARRTNSSSALGQLFDHGCDALNVTLSGMSMLAAMQAGCDGE
SMLLLLVLGHAMLFMATVEEYVTGSMVLRAINGPNEGIVLLCVMYALTAA
AGPSVWHRRVHDAIALRRVATAMALLASTHAVVGNIIGMVQHARRRGLHA
RHALCNALQLSQPLLLHSALFLGTAVAAPRVFARCGVALMWMAGAAMFDV
VTRVMLAHLARCEFPRASPLLVPAAVACGAVVGAERGVVGMCVAHAVVAG
ALGGAAAYNAWRACCVLRQLCDAMRVRCFSLKRG*
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mRNA from alignment at tig00004384_pilon:685884..687038-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil8206.t1 ID=Gchil8206.t1|Name=Gchil8206.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1155bp|location=Sequence derived from alignment at tig00004384_pilon:685884..687038- (Gracilaria chilensis NLEC103_M9 male)
ATGAAGACGACCGAATGGTGGTACGTGCCGCAGCTGCACAACACGCACGT
CGAGGCGTTGCGAAGGTACAAGTATAGCGGAGAAGATCGATCGGTGCTGC
GGCGTTATGTGATGAACGACGTGTACGAACGCGTGGTATACGCGTTTCCG
CCATGGGTAGCTCCAAACTCCATCACGCTGGGCGGCTTGTTGTTGGTGGT
GCTGTCGCACGCACAGTTGCTTTACTATAGCGTGGATCTGTCGCGCGCGG
CGCCGCGCGGCGCGTATGCGCTGGCGGCCATCACGCTGTTCAGTTACATG
GTGCTGGACAATCTGGACGGGAAGCAGGCGCGACGCACCAACAGCTCGTC
GGCGCTGGGACAGCTGTTTGACCACGGCTGCGACGCGCTCAACGTGACGC
TATCGGGCATGAGCATGCTGGCCGCCATGCAGGCGGGCTGCGACGGCGAG
TCCATGCTGCTGTTACTCGTGCTGGGACACGCCATGCTGTTCATGGCCAC
GGTGGAGGAGTATGTGACGGGCAGCATGGTGCTGCGCGCCATCAACGGAC
CCAACGAGGGCATTGTGCTGCTGTGCGTCATGTACGCGCTCACAGCCGCC
GCCGGACCGTCTGTGTGGCACCGTCGCGTACATGACGCCATCGCGTTGCG
TCGCGTCGCAACGGCAATGGCGCTACTGGCCAGCACGCACGCCGTGGTCG
GCAACATAATCGGTATGGTACAACATGCGCGTCGGCGCGGTTTGCACGCA
CGCCACGCACTTTGCAACGCGTTGCAACTGTCGCAACCGTTGTTACTACA
TTCGGCGCTGTTTCTGGGCACGGCGGTTGCGGCGCCGCGCGTGTTCGCGC
GCTGCGGTGTGGCACTCATGTGGATGGCTGGTGCCGCTATGTTCGACGTG
GTGACGCGAGTCATGTTGGCGCATTTGGCACGGTGTGAGTTCCCGCGCGC
ATCACCGCTGCTTGTGCCCGCCGCCGTGGCTTGCGGCGCCGTCGTGGGCG
CGGAGCGCGGCGTGGTTGGCATGTGTGTGGCGCACGCGGTTGTGGCGGGC
GCGCTTGGCGGCGCCGCCGCGTATAACGCATGGAGAGCGTGTTGTGTGTT
GCGTCAGTTGTGCGACGCGATGCGCGTGCGCTGCTTCTCGCTAAAGCGCG
GGTAA
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Coding sequence (CDS) from alignment at tig00004384_pilon:685884..687038-

>Gchil8206.t1 ID=Gchil8206.t1|Name=Gchil8206.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1155bp|location=Sequence derived from alignment at tig00004384_pilon:685884..687038- (Gracilaria chilensis NLEC103_M9 male)
ATGAAGACGACCGAATGGTGGTACGTGCCGCAGCTGCACAACACGCACGT
CGAGGCGTTGCGAAGGTACAAGTATAGCGGAGAAGATCGATCGGTGCTGC
GGCGTTATGTGATGAACGACGTGTACGAACGCGTGGTATACGCGTTTCCG
CCATGGGTAGCTCCAAACTCCATCACGCTGGGCGGCTTGTTGTTGGTGGT
GCTGTCGCACGCACAGTTGCTTTACTATAGCGTGGATCTGTCGCGCGCGG
CGCCGCGCGGCGCGTATGCGCTGGCGGCCATCACGCTGTTCAGTTACATG
GTGCTGGACAATCTGGACGGGAAGCAGGCGCGACGCACCAACAGCTCGTC
GGCGCTGGGACAGCTGTTTGACCACGGCTGCGACGCGCTCAACGTGACGC
TATCGGGCATGAGCATGCTGGCCGCCATGCAGGCGGGCTGCGACGGCGAG
TCCATGCTGCTGTTACTCGTGCTGGGACACGCCATGCTGTTCATGGCCAC
GGTGGAGGAGTATGTGACGGGCAGCATGGTGCTGCGCGCCATCAACGGAC
CCAACGAGGGCATTGTGCTGCTGTGCGTCATGTACGCGCTCACAGCCGCC
GCCGGACCGTCTGTGTGGCACCGTCGCGTACATGACGCCATCGCGTTGCG
TCGCGTCGCAACGGCAATGGCGCTACTGGCCAGCACGCACGCCGTGGTCG
GCAACATAATCGGTATGGTACAACATGCGCGTCGGCGCGGTTTGCACGCA
CGCCACGCACTTTGCAACGCGTTGCAACTGTCGCAACCGTTGTTACTACA
TTCGGCGCTGTTTCTGGGCACGGCGGTTGCGGCGCCGCGCGTGTTCGCGC
GCTGCGGTGTGGCACTCATGTGGATGGCTGGTGCCGCTATGTTCGACGTG
GTGACGCGAGTCATGTTGGCGCATTTGGCACGGTGTGAGTTCCCGCGCGC
ATCACCGCTGCTTGTGCCCGCCGCCGTGGCTTGCGGCGCCGTCGTGGGCG
CGGAGCGCGGCGTGGTTGGCATGTGTGTGGCGCACGCGGTTGTGGCGGGC
GCGCTTGGCGGCGCCGCCGCGTATAACGCATGGAGAGCGTGTTGTGTGTT
GCGTCAGTTGTGCGACGCGATGCGCGTGCGCTGCTTCTCGCTAAAGCGCG
GGTAA
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