Gchil8200.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil8200.t1
Unique Name	Gchil8200.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	556

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004384_pilon	contig	tig00004384_pilon:671570..673237 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	192875.XP_004346183.1
Preferred name	DNPEP
PFAMs	Peptidase_M18
Max annot lvl	33154\|Opisthokonta
KEGG ko	ko:K01267
GOs	GO:0003674,GO:0003824,GO:0004177,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006508,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008235,GO:0008237,GO:0008238,GO:0009987,GO:0016787,GO:0019538,GO:0034641,GO:0042802,GO:0043170,GO:0043603,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0070006,GO:0070011,GO:0071704,GO:0140096,GO:1901564
Evalue	1.74e-142
EggNOG OGs	COG1362@1\|root,KOG2596@2759\|Eukaryota,38CES@33154\|Opisthokonta
EC	3.4.11.21
Description	Belongs to the peptidase M18 family
COG category	E
BRITE	ko00000,ko01000,ko01002,ko04131

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil8200	Gchil8200	Gracilaria chilensis NLEC103_M9 male	gene	tig00004384_pilon 671570..673237 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8200.t1.start1	Gchil8200.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004384_pilon 671570..671572 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8200.t1.CDS1	Gchil8200.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004384_pilon 671570..673237 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8200.t1.exon1	Gchil8200.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004384_pilon 671570..673237 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8200.t1.stop1	Gchil8200.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004384_pilon 673235..673237 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8200.t1	Gchil8200.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004384_pilon 671570..673237 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004384_pilon:671570..673237+
coding sequence from alignment at tig00004384_pilon:671570..673237+

mRNA sequence

>Gchil8200.t1 ID=Gchil8200.t1|Name=Gchil8200.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=556bp
MPFLSKLPHRNASICGQRLGAVRALITGHHWRSRLPAAVNRAPLPAKAQP
FPQNLNQPRTWSNPPKLPPHATTTMAELVHKFLDFNDNSRSPFHAVHSIA
EMLSAASFQTIRETDDWQKVINMGGRYMFSSHGSSIVAFTLPPVIDETQF
AFNVIGAHTDSPCFKVKPVSKLSAHGYVQLGVECYGGGLWHTWFDRDLTV
AGRVIVRSSSGKNVVKLVSVKKPILRIPNLAIHLSRTVNTEGFKVNKETD
TRPILATQLAAIVNEPLDDADTFAETNGAPDEHKKYTGLASERHAPLLLT
ILAKEVGVSPKDIVDVDLCLADTQAAAIGGALDEFVFAARLDNLASCFTA
TQSLLDATRDEENGEDVPAVCRMITCFDHEEIGSRSSHGADSPLLSNTMQ
RICTALNLSCERVLTKSLLISADMAHAIHPNYHGKHENKHRPALGGGLVV
KTNQNQRYATSGVSGFLVREAARRAQTPVQEFVVPNDKPCGSTIGPLLSS
RTGLRTVDVGQAQLSMHSIREMCSSGDFSLVVAVLKELLKNQSDILSKMD
GLELQ*

spliced messenger RNA

>Gchil8200.t1 ID=Gchil8200.t1|Name=Gchil8200.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1668bp|location=Sequence derived from alignment at tig00004384_pilon:671570..673237+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTTTTTTGAGCAAATTACCACACAGAAATGCGTCCATTTGCGGCCA
ACGGCTCGGCGCCGTCCGTGCGCTCATCACAGGCCATCACTGGCGATCGA
GGCTACCTGCGGCAGTCAACCGCGCTCCCCTGCCTGCCAAAGCGCAGCCG
TTCCCGCAAAACCTGAACCAACCACGCACTTGGTCCAATCCGCCGAAGCT
ACCACCGCACGCAACGACCACAATGGCGGAACTCGTGCACAAATTCCTCG
ACTTCAACGACAACAGTCGCTCGCCCTTCCACGCTGTTCACTCCATCGCA
GAGATGCTCAGCGCCGCTTCGTTCCAGACGATTCGCGAAACCGATGACTG
GCAAAAAGTGATCAACATGGGCGGTCGCTACATGTTCAGCTCCCACGGCT
CATCCATTGTGGCATTCACTCTGCCGCCCGTCATTGACGAGACGCAGTTT
GCATTCAACGTGATCGGCGCACACACCGATTCGCCGTGCTTCAAGGTCAA
GCCGGTTTCCAAGCTTTCCGCCCATGGCTATGTACAGCTTGGCGTCGAGT
GCTACGGAGGCGGCTTGTGGCACACCTGGTTCGATCGTGATCTCACCGTT
GCGGGGCGTGTGATTGTGCGCAGTTCGTCAGGCAAGAACGTTGTCAAACT
GGTTTCTGTGAAGAAGCCGATTTTGAGAATTCCAAACCTTGCCATTCACC
TGTCGCGAACCGTCAACACGGAAGGCTTCAAGGTCAACAAGGAAACTGAC
ACGCGGCCGATTCTGGCCACTCAACTAGCAGCAATCGTAAACGAACCGCT
CGATGACGCTGACACCTTCGCCGAGACAAATGGAGCACCGGATGAGCACA
AAAAGTACACGGGCTTGGCAAGTGAACGACACGCGCCGCTGCTACTGACC
ATTCTGGCGAAAGAAGTTGGCGTTTCGCCAAAGGACATTGTGGATGTTGA
CCTTTGTCTGGCTGATACCCAAGCGGCTGCCATTGGCGGCGCGCTGGACG
AGTTTGTATTTGCGGCACGATTGGACAATCTGGCTAGTTGCTTCACGGCC
ACGCAGTCGCTACTGGACGCCACGCGCGACGAAGAGAATGGAGAAGACGT
GCCCGCAGTGTGTCGCATGATAACTTGTTTTGATCACGAAGAAATCGGTT
CCCGTTCATCGCACGGCGCTGATTCACCTTTGCTTTCAAACACGATGCAG
CGGATCTGTACTGCATTGAATTTGAGCTGCGAAAGAGTGTTGACAAAAAG
TCTGCTCATCAGCGCGGACATGGCACATGCCATCCATCCAAACTACCACG
GCAAACACGAAAACAAACACCGACCAGCACTTGGAGGCGGGCTAGTGGTC
AAGACGAACCAAAACCAGCGTTATGCGACGTCAGGCGTGTCTGGCTTTCT
GGTACGTGAGGCGGCGCGGCGCGCTCAAACGCCGGTGCAGGAGTTTGTGG
TGCCAAATGACAAGCCGTGTGGATCAACAATTGGACCGCTGCTGTCCAGT
CGCACGGGGCTGCGAACGGTGGACGTGGGACAGGCACAGTTGAGTATGCA
CTCAATTCGGGAAATGTGTTCCAGCGGAGATTTTTCGTTAGTGGTGGCGG
TGTTGAAGGAATTGTTGAAGAACCAGAGCGACATATTGAGCAAAATGGAT
GGGCTAGAGCTGCAGTAG

protein sequence of Gchil8200.t1

>Gchil8200.t1 ID=Gchil8200.t1|Name=Gchil8200.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=556bp
MPFLSKLPHRNASICGQRLGAVRALITGHHWRSRLPAAVNRAPLPAKAQP
FPQNLNQPRTWSNPPKLPPHATTTMAELVHKFLDFNDNSRSPFHAVHSIA
EMLSAASFQTIRETDDWQKVINMGGRYMFSSHGSSIVAFTLPPVIDETQF
AFNVIGAHTDSPCFKVKPVSKLSAHGYVQLGVECYGGGLWHTWFDRDLTV
AGRVIVRSSSGKNVVKLVSVKKPILRIPNLAIHLSRTVNTEGFKVNKETD
TRPILATQLAAIVNEPLDDADTFAETNGAPDEHKKYTGLASERHAPLLLT
ILAKEVGVSPKDIVDVDLCLADTQAAAIGGALDEFVFAARLDNLASCFTA
TQSLLDATRDEENGEDVPAVCRMITCFDHEEIGSRSSHGADSPLLSNTMQ
RICTALNLSCERVLTKSLLISADMAHAIHPNYHGKHENKHRPALGGGLVV
KTNQNQRYATSGVSGFLVREAARRAQTPVQEFVVPNDKPCGSTIGPLLSS
RTGLRTVDVGQAQLSMHSIREMCSSGDFSLVVAVLKELLKNQSDILSKMD
GLELQ*

mRNA from alignment at tig00004384_pilon:671570..673237+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil8200.t1 ID=Gchil8200.t1|Name=Gchil8200.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1668bp|location=Sequence derived from alignment at tig00004384_pilon:671570..673237+ (Gracilaria chilensis NLEC103_M9 male)
ATGCCTTTTTTGAGCAAATTACCACACAGAAATGCGTCCATTTGCGGCCA
ACGGCTCGGCGCCGTCCGTGCGCTCATCACAGGCCATCACTGGCGATCGA
GGCTACCTGCGGCAGTCAACCGCGCTCCCCTGCCTGCCAAAGCGCAGCCG
TTCCCGCAAAACCTGAACCAACCACGCACTTGGTCCAATCCGCCGAAGCT
ACCACCGCACGCAACGACCACAATGGCGGAACTCGTGCACAAATTCCTCG
ACTTCAACGACAACAGTCGCTCGCCCTTCCACGCTGTTCACTCCATCGCA
GAGATGCTCAGCGCCGCTTCGTTCCAGACGATTCGCGAAACCGATGACTG
GCAAAAAGTGATCAACATGGGCGGTCGCTACATGTTCAGCTCCCACGGCT
CATCCATTGTGGCATTCACTCTGCCGCCCGTCATTGACGAGACGCAGTTT
GCATTCAACGTGATCGGCGCACACACCGATTCGCCGTGCTTCAAGGTCAA
GCCGGTTTCCAAGCTTTCCGCCCATGGCTATGTACAGCTTGGCGTCGAGT
GCTACGGAGGCGGCTTGTGGCACACCTGGTTCGATCGTGATCTCACCGTT
GCGGGGCGTGTGATTGTGCGCAGTTCGTCAGGCAAGAACGTTGTCAAACT
GGTTTCTGTGAAGAAGCCGATTTTGAGAATTCCAAACCTTGCCATTCACC
TGTCGCGAACCGTCAACACGGAAGGCTTCAAGGTCAACAAGGAAACTGAC
ACGCGGCCGATTCTGGCCACTCAACTAGCAGCAATCGTAAACGAACCGCT
CGATGACGCTGACACCTTCGCCGAGACAAATGGAGCACCGGATGAGCACA
AAAAGTACACGGGCTTGGCAAGTGAACGACACGCGCCGCTGCTACTGACC
ATTCTGGCGAAAGAAGTTGGCGTTTCGCCAAAGGACATTGTGGATGTTGA
CCTTTGTCTGGCTGATACCCAAGCGGCTGCCATTGGCGGCGCGCTGGACG
AGTTTGTATTTGCGGCACGATTGGACAATCTGGCTAGTTGCTTCACGGCC
ACGCAGTCGCTACTGGACGCCACGCGCGACGAAGAGAATGGAGAAGACGT
GCCCGCAGTGTGTCGCATGATAACTTGTTTTGATCACGAAGAAATCGGTT
CCCGTTCATCGCACGGCGCTGATTCACCTTTGCTTTCAAACACGATGCAG
CGGATCTGTACTGCATTGAATTTGAGCTGCGAAAGAGTGTTGACAAAAAG
TCTGCTCATCAGCGCGGACATGGCACATGCCATCCATCCAAACTACCACG
GCAAACACGAAAACAAACACCGACCAGCACTTGGAGGCGGGCTAGTGGTC
AAGACGAACCAAAACCAGCGTTATGCGACGTCAGGCGTGTCTGGCTTTCT
GGTACGTGAGGCGGCGCGGCGCGCTCAAACGCCGGTGCAGGAGTTTGTGG
TGCCAAATGACAAGCCGTGTGGATCAACAATTGGACCGCTGCTGTCCAGT
CGCACGGGGCTGCGAACGGTGGACGTGGGACAGGCACAGTTGAGTATGCA
CTCAATTCGGGAAATGTGTTCCAGCGGAGATTTTTCGTTAGTGGTGGCGG
TGTTGAAGGAATTGTTGAAGAACCAGAGCGACATATTGAGCAAAATGGAT
GGGCTAGAGCTGCAGTAG

Coding sequence (CDS) from alignment at tig00004384_pilon:671570..673237+

>Gchil8200.t1 ID=Gchil8200.t1|Name=Gchil8200.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1668bp|location=Sequence derived from alignment at tig00004384_pilon:671570..673237+ (Gracilaria chilensis NLEC103_M9 male)
ATGCCTTTTTTGAGCAAATTACCACACAGAAATGCGTCCATTTGCGGCCA
ACGGCTCGGCGCCGTCCGTGCGCTCATCACAGGCCATCACTGGCGATCGA
GGCTACCTGCGGCAGTCAACCGCGCTCCCCTGCCTGCCAAAGCGCAGCCG
TTCCCGCAAAACCTGAACCAACCACGCACTTGGTCCAATCCGCCGAAGCT
ACCACCGCACGCAACGACCACAATGGCGGAACTCGTGCACAAATTCCTCG
ACTTCAACGACAACAGTCGCTCGCCCTTCCACGCTGTTCACTCCATCGCA
GAGATGCTCAGCGCCGCTTCGTTCCAGACGATTCGCGAAACCGATGACTG
GCAAAAAGTGATCAACATGGGCGGTCGCTACATGTTCAGCTCCCACGGCT
CATCCATTGTGGCATTCACTCTGCCGCCCGTCATTGACGAGACGCAGTTT
GCATTCAACGTGATCGGCGCACACACCGATTCGCCGTGCTTCAAGGTCAA
GCCGGTTTCCAAGCTTTCCGCCCATGGCTATGTACAGCTTGGCGTCGAGT
GCTACGGAGGCGGCTTGTGGCACACCTGGTTCGATCGTGATCTCACCGTT
GCGGGGCGTGTGATTGTGCGCAGTTCGTCAGGCAAGAACGTTGTCAAACT
GGTTTCTGTGAAGAAGCCGATTTTGAGAATTCCAAACCTTGCCATTCACC
TGTCGCGAACCGTCAACACGGAAGGCTTCAAGGTCAACAAGGAAACTGAC
ACGCGGCCGATTCTGGCCACTCAACTAGCAGCAATCGTAAACGAACCGCT
CGATGACGCTGACACCTTCGCCGAGACAAATGGAGCACCGGATGAGCACA
AAAAGTACACGGGCTTGGCAAGTGAACGACACGCGCCGCTGCTACTGACC
ATTCTGGCGAAAGAAGTTGGCGTTTCGCCAAAGGACATTGTGGATGTTGA
CCTTTGTCTGGCTGATACCCAAGCGGCTGCCATTGGCGGCGCGCTGGACG
AGTTTGTATTTGCGGCACGATTGGACAATCTGGCTAGTTGCTTCACGGCC
ACGCAGTCGCTACTGGACGCCACGCGCGACGAAGAGAATGGAGAAGACGT
GCCCGCAGTGTGTCGCATGATAACTTGTTTTGATCACGAAGAAATCGGTT
CCCGTTCATCGCACGGCGCTGATTCACCTTTGCTTTCAAACACGATGCAG
CGGATCTGTACTGCATTGAATTTGAGCTGCGAAAGAGTGTTGACAAAAAG
TCTGCTCATCAGCGCGGACATGGCACATGCCATCCATCCAAACTACCACG
GCAAACACGAAAACAAACACCGACCAGCACTTGGAGGCGGGCTAGTGGTC
AAGACGAACCAAAACCAGCGTTATGCGACGTCAGGCGTGTCTGGCTTTCT
GGTACGTGAGGCGGCGCGGCGCGCTCAAACGCCGGTGCAGGAGTTTGTGG
TGCCAAATGACAAGCCGTGTGGATCAACAATTGGACCGCTGCTGTCCAGT
CGCACGGGGCTGCGAACGGTGGACGTGGGACAGGCACAGTTGAGTATGCA
CTCAATTCGGGAAATGTGTTCCAGCGGAGATTTTTCGTTAGTGGTGGCGG
TGTTGAAGGAATTGTTGAAGAACCAGAGCGACATATTGAGCAAAATGGAT
GGGCTAGAGCTGCAGTAG