Gchil8184.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil8184.t1
Unique Name	Gchil8184.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	279

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004384_pilon	contig	tig00004384_pilon:633652..634488 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CMT175CT
PFAMs	ELO
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00004,RC00039,RC02728,RC02888,RC02997
KEGG ko	ko:K10246
KEGG Reaction	R07758,R07762,R09419,R10825
KEGG Pathway	ko00062,ko01040,ko01110,ko01212,map00062,map01040,map01110,map01212
KEGG Module	M00415
GOs	GO:0000038,GO:0003674,GO:0003824,GO:0004312,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0006643,GO:0006665,GO:0006807,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009922,GO:0009987,GO:0012505,GO:0016020,GO:0016021,GO:0016053,GO:0016740,GO:0016746,GO:0016747,GO:0019367,GO:0019368,GO:0019752,GO:0030148,GO:0030176,GO:0030497,GO:0031224,GO:0031227,GO:0031984,GO:0032787,GO:0034625,GO:0034626,GO:0042175,GO:0042761,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0046394,GO:0046467,GO:0071704,GO:0072330,GO:0098827,GO:1901564,GO:1901566,GO:1901576
Evalue	2.51e-89
EggNOG OGs	KOG3071@1\|root,KOG3071@2759\|Eukaryota
EC	2.3.1.199
Description	fatty acid elongation, saturated fatty acid
COG category	I
BRITE	ko00000,ko00001,ko00002,ko01000,ko01004

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil8184	Gchil8184	Gracilaria chilensis NLEC103_M9 male	gene	tig00004384_pilon 633652..634488 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8184.t1.stop1	Gchil8184.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004384_pilon 633652..633654 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8184.t1.CDS1	Gchil8184.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004384_pilon 633652..634488 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8184.t1.exon1	Gchil8184.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004384_pilon 633652..634488 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8184.t1.start1	Gchil8184.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004384_pilon 634486..634488 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8184.t1	Gchil8184.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004384_pilon 633652..634488 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004384_pilon:633652..634488-
coding sequence from alignment at tig00004384_pilon:633652..634488-

mRNA sequence

>Gchil8184.t1 ID=Gchil8184.t1|Name=Gchil8184.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=279bp
MRLPQSFEWKMAPFSSVVYPVCAIVVYLSLIFSLQKFMRSRPPVSLKVPT
VVHNVFLCALSVAMAMGVFAEVLKTWFASSDATREVLCDLSGSAMRGRMG
WWMYIFYLSKFYELFDTVIMVLKKRPLNFLHVYHHCVVLPLFYVYMSTNM
VLQWILVVANSSVHVAMYYYYAMAAMGVKVWWKKYITQAQIVQFIIDLTA
TWPYPFLYFSTTGCSGSMRGWFFGQAVGLSFFKLFRDFYVRSYNKGKLKS
QTEHNPSHSSPIDSAKEGCIQQSVKKNC*

spliced messenger RNA

>Gchil8184.t1 ID=Gchil8184.t1|Name=Gchil8184.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=837bp|location=Sequence derived from alignment at tig00004384_pilon:633652..634488- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGTTTGCCGCAGAGCTTTGAATGGAAGATGGCGCCGTTTTCATCGGT
GGTGTACCCGGTTTGCGCGATTGTTGTTTATTTGTCGCTTATTTTCTCCT
TGCAGAAGTTCATGAGATCGAGACCCCCTGTCTCCCTCAAAGTCCCCACC
GTTGTTCATAATGTGTTTCTGTGCGCGCTCTCGGTGGCTATGGCCATGGG
CGTCTTTGCGGAGGTTCTGAAAACTTGGTTTGCTTCCTCTGATGCGACGA
GGGAGGTTTTGTGCGATCTTTCTGGAAGTGCAATGCGTGGCCGTATGGGA
TGGTGGATGTATATATTCTACTTGTCCAAGTTTTACGAACTGTTTGATAC
CGTTATCATGGTCTTGAAAAAACGACCCCTCAATTTTCTACACGTCTACC
ATCATTGTGTTGTCCTACCGCTGTTTTATGTTTACATGTCTACCAACATG
GTGCTACAATGGATTCTCGTCGTGGCTAACTCGTCTGTTCATGTTGCAAT
GTATTACTACTATGCCATGGCTGCGATGGGAGTCAAGGTGTGGTGGAAGA
AATACATCACTCAGGCCCAAATTGTTCAGTTTATTATTGATCTCACTGCG
ACGTGGCCATATCCTTTCCTCTACTTCTCTACGACCGGCTGCTCTGGTAG
TATGAGAGGTTGGTTCTTTGGTCAGGCCGTGGGCTTGAGTTTCTTCAAAC
TTTTCCGAGATTTTTACGTCAGAAGCTACAATAAGGGCAAGTTAAAGTCG
CAAACGGAACACAATCCATCCCACTCCTCTCCCATCGATTCGGCAAAGGA
GGGTTGTATCCAACAAAGTGTCAAGAAGAACTGTTGA

protein sequence of Gchil8184.t1

>Gchil8184.t1 ID=Gchil8184.t1|Name=Gchil8184.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=279bp
MRLPQSFEWKMAPFSSVVYPVCAIVVYLSLIFSLQKFMRSRPPVSLKVPT
VVHNVFLCALSVAMAMGVFAEVLKTWFASSDATREVLCDLSGSAMRGRMG
WWMYIFYLSKFYELFDTVIMVLKKRPLNFLHVYHHCVVLPLFYVYMSTNM
VLQWILVVANSSVHVAMYYYYAMAAMGVKVWWKKYITQAQIVQFIIDLTA
TWPYPFLYFSTTGCSGSMRGWFFGQAVGLSFFKLFRDFYVRSYNKGKLKS
QTEHNPSHSSPIDSAKEGCIQQSVKKNC*

mRNA from alignment at tig00004384_pilon:633652..634488-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil8184.t1 ID=Gchil8184.t1|Name=Gchil8184.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=837bp|location=Sequence derived from alignment at tig00004384_pilon:633652..634488- (Gracilaria chilensis NLEC103_M9 male)
ATGCGTTTGCCGCAGAGCTTTGAATGGAAGATGGCGCCGTTTTCATCGGT
GGTGTACCCGGTTTGCGCGATTGTTGTTTATTTGTCGCTTATTTTCTCCT
TGCAGAAGTTCATGAGATCGAGACCCCCTGTCTCCCTCAAAGTCCCCACC
GTTGTTCATAATGTGTTTCTGTGCGCGCTCTCGGTGGCTATGGCCATGGG
CGTCTTTGCGGAGGTTCTGAAAACTTGGTTTGCTTCCTCTGATGCGACGA
GGGAGGTTTTGTGCGATCTTTCTGGAAGTGCAATGCGTGGCCGTATGGGA
TGGTGGATGTATATATTCTACTTGTCCAAGTTTTACGAACTGTTTGATAC
CGTTATCATGGTCTTGAAAAAACGACCCCTCAATTTTCTACACGTCTACC
ATCATTGTGTTGTCCTACCGCTGTTTTATGTTTACATGTCTACCAACATG
GTGCTACAATGGATTCTCGTCGTGGCTAACTCGTCTGTTCATGTTGCAAT
GTATTACTACTATGCCATGGCTGCGATGGGAGTCAAGGTGTGGTGGAAGA
AATACATCACTCAGGCCCAAATTGTTCAGTTTATTATTGATCTCACTGCG
ACGTGGCCATATCCTTTCCTCTACTTCTCTACGACCGGCTGCTCTGGTAG
TATGAGAGGTTGGTTCTTTGGTCAGGCCGTGGGCTTGAGTTTCTTCAAAC
TTTTCCGAGATTTTTACGTCAGAAGCTACAATAAGGGCAAGTTAAAGTCG
CAAACGGAACACAATCCATCCCACTCCTCTCCCATCGATTCGGCAAAGGA
GGGTTGTATCCAACAAAGTGTCAAGAAGAACTGTTGA

Coding sequence (CDS) from alignment at tig00004384_pilon:633652..634488-

>Gchil8184.t1 ID=Gchil8184.t1|Name=Gchil8184.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=837bp|location=Sequence derived from alignment at tig00004384_pilon:633652..634488- (Gracilaria chilensis NLEC103_M9 male)
ATGCGTTTGCCGCAGAGCTTTGAATGGAAGATGGCGCCGTTTTCATCGGT
GGTGTACCCGGTTTGCGCGATTGTTGTTTATTTGTCGCTTATTTTCTCCT
TGCAGAAGTTCATGAGATCGAGACCCCCTGTCTCCCTCAAAGTCCCCACC
GTTGTTCATAATGTGTTTCTGTGCGCGCTCTCGGTGGCTATGGCCATGGG
CGTCTTTGCGGAGGTTCTGAAAACTTGGTTTGCTTCCTCTGATGCGACGA
GGGAGGTTTTGTGCGATCTTTCTGGAAGTGCAATGCGTGGCCGTATGGGA
TGGTGGATGTATATATTCTACTTGTCCAAGTTTTACGAACTGTTTGATAC
CGTTATCATGGTCTTGAAAAAACGACCCCTCAATTTTCTACACGTCTACC
ATCATTGTGTTGTCCTACCGCTGTTTTATGTTTACATGTCTACCAACATG
GTGCTACAATGGATTCTCGTCGTGGCTAACTCGTCTGTTCATGTTGCAAT
GTATTACTACTATGCCATGGCTGCGATGGGAGTCAAGGTGTGGTGGAAGA
AATACATCACTCAGGCCCAAATTGTTCAGTTTATTATTGATCTCACTGCG
ACGTGGCCATATCCTTTCCTCTACTTCTCTACGACCGGCTGCTCTGGTAG
TATGAGAGGTTGGTTCTTTGGTCAGGCCGTGGGCTTGAGTTTCTTCAAAC
TTTTCCGAGATTTTTACGTCAGAAGCTACAATAAGGGCAAGTTAAAGTCG
CAAACGGAACACAATCCATCCCACTCCTCTCCCATCGATTCGGCAAAGGA
GGGTTGTATCCAACAAAGTGTCAAGAAGAACTGTTGA