Gchil8161.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil8161.t1
Unique NameGchil8161.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length296
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004384_piloncontigtig00004384_pilon:385509..386464 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7918.ENSLOCP00000004918
Preferred nameLCMT2
PFAMsKelch_4,Kelch_5,Kelch_6,LCM
Max annot lvl33208|Metazoa
KEGG rclassRC00003,RC00460,RC00745
KEGG koko:K15451
KEGG ReactionR10586,R10587
GOsGO:0001510,GO:0003674,GO:0003824,GO:0003880,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006464,GO:0006479,GO:0006481,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008171,GO:0008173,GO:0008175,GO:0008213,GO:0008276,GO:0008757,GO:0009058,GO:0009451,GO:0009987,GO:0010340,GO:0010467,GO:0016070,GO:0016740,GO:0016741,GO:0018410,GO:0019538,GO:0030488,GO:0031590,GO:0031591,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0036211,GO:0043170,GO:0043412,GO:0043414,GO:0043687,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0051998,GO:0071704,GO:0090304,GO:0140096,GO:0140098,GO:0140101,GO:1901135,GO:1901137,GO:1901360,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659
Evalue1.2e-17
EggNOG OGsKOG2918@1|root,KOG2918@2759|Eukaryota,39RWQ@33154|Opisthokonta,3B976@33208|Metazoa,3D1W7@33213|Bilateria,48C2I@7711|Chordata,48ZE2@7742|Vertebrata,49VDR@7898|Actinopterygii
EC2.1.1.290,2.3.1.231
DescriptionLeucine carboxyl methyltransferase
COG categoryO
BRITEko00000,ko01000,ko03016
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8161Gchil8161Gracilaria chilensis NLEC103_M9 malegenetig00004384_pilon 385509..386464 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8161.t1Gchil8161.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004384_pilon 385509..386464 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8161.t1.start1Gchil8161.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004384_pilon 385509..385511 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8161.t1.CDS1Gchil8161.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004384_pilon 385509..386310 +
Gchil8161.t1.CDS2Gchil8161.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004384_pilon 386379..386464 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8161.t1.exon1Gchil8161.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004384_pilon 385509..386310 +
Gchil8161.t1.exon2Gchil8161.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004384_pilon 386379..386464 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8161.t1.intron1Gchil8161.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004384_pilon 386311..386378 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8161.t1.stop1Gchil8161.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004384_pilon 386462..386464 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil8161.t1 ID=Gchil8161.t1|Name=Gchil8161.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=296bp
MSLQGIASESRATSDAALIATNDDAFESKVAAMRAGYFKDEALATMAEKY
ATLGTRRGTLRRPPVINRGTYARVLLKETLVEAFLTTASPYGKMAQIISI
GAGFDTQPFALVKNASRLRPFHYVELDFADVVREKTTLASEVLSGEECCL
TTVRDCSGAVQGTVCVVKRVESVSMTECTDSSKAKGMQFKNGGVSMYSTR
GVDVRDLRKVEAVLEELGVCSEERTLVVAEIMLVYMETEHSDALIRFFSG
WLSGVRALVAIEPTGRDISEHGVAREAVEKTGVGECERRKPFAWV*
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spliced messenger RNA

>Gchil8161.t1 ID=Gchil8161.t1|Name=Gchil8161.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=888bp|location=Sequence derived from alignment at tig00004384_pilon:385509..386464+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGTTGCAGGGAATTGCGAGCGAGAGCAGAGCAACCAGTGATGCGGC
ACTAATCGCGACGAACGACGATGCGTTTGAATCCAAGGTGGCCGCCATGC
GAGCCGGGTACTTTAAGGATGAAGCACTTGCCACAATGGCTGAAAAGTAT
GCGACGCTTGGCACGCGTCGCGGGACGTTGCGACGTCCGCCTGTGATCAA
CCGGGGGACGTATGCGCGTGTGCTACTGAAAGAAACTCTTGTGGAAGCGT
TTCTCACGACGGCGTCTCCGTATGGAAAGATGGCGCAGATCATATCAATC
GGAGCTGGTTTTGATACACAGCCGTTCGCGCTGGTGAAAAACGCGAGTCG
GCTTCGACCGTTTCACTACGTGGAACTTGACTTTGCTGACGTGGTGCGCG
AAAAGACGACTCTTGCGAGCGAAGTATTGTCGGGCGAAGAGTGTTGCTTG
ACGACTGTACGCGACTGTAGCGGGGCTGTGCAAGGCACGGTTTGCGTGGT
GAAGCGAGTGGAATCAGTGAGCATGACGGAATGCACGGATAGTTCAAAGG
CGAAAGGTATGCAGTTCAAGAACGGGGGCGTGTCGATGTATTCGACGCGC
GGGGTGGATGTTCGCGACCTGCGCAAGGTTGAGGCGGTGCTTGAGGAGTT
GGGTGTGTGCTCGGAGGAAAGGACTCTGGTTGTGGCGGAAATCATGCTGG
TGTACATGGAGACAGAGCACTCTGACGCGCTGATACGGTTCTTCTCCGGG
TGGTTGAGCGGGGTGCGGGCGTTGGTTGCGATTGAACCCACTGGACGAGA
CATATCCGAACATGGAGTCGCAAGAGAGGCGGTTGAAAAGACTGGGGTGG
GCGAATGTGAGCGTAGAAAGCCTTTTGCATGGGTTTGA
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protein sequence of Gchil8161.t1

>Gchil8161.t1 ID=Gchil8161.t1|Name=Gchil8161.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=296bp
MSLQGIASESRATSDAALIATNDDAFESKVAAMRAGYFKDEALATMAEKY
ATLGTRRGTLRRPPVINRGTYARVLLKETLVEAFLTTASPYGKMAQIISI
GAGFDTQPFALVKNASRLRPFHYVELDFADVVREKTTLASEVLSGEECCL
TTVRDCSGAVQGTVCVVKRVESVSMTECTDSSKAKGMQFKNGGVSMYSTR
GVDVRDLRKVEAVLEELGVCSEERTLVVAEIMLVYMETEHSDALIRFFSG
WLSGVRALVAIEPTGRDISEHGVAREAVEKTGVGECERRKPFAWV*
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mRNA from alignment at tig00004384_pilon:385509..386464+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil8161.t1 ID=Gchil8161.t1|Name=Gchil8161.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=956bp|location=Sequence derived from alignment at tig00004384_pilon:385509..386464+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCGTTGCAGGGAATTGCGAGCGAGAGCAGAGCAACCAGTGATGCGGC
ACTAATCGCGACGAACGACGATGCGTTTGAATCCAAGGTGGCCGCCATGC
GAGCCGGGTACTTTAAGGATGAAGCACTTGCCACAATGGCTGAAAAGTAT
GCGACGCTTGGCACGCGTCGCGGGACGTTGCGACGTCCGCCTGTGATCAA
CCGGGGGACGTATGCGCGTGTGCTACTGAAAGAAACTCTTGTGGAAGCGT
TTCTCACGACGGCGTCTCCGTATGGAAAGATGGCGCAGATCATATCAATC
GGAGCTGGTTTTGATACACAGCCGTTCGCGCTGGTGAAAAACGCGAGTCG
GCTTCGACCGTTTCACTACGTGGAACTTGACTTTGCTGACGTGGTGCGCG
AAAAGACGACTCTTGCGAGCGAAGTATTGTCGGGCGAAGAGTGTTGCTTG
ACGACTGTACGCGACTGTAGCGGGGCTGTGCAAGGCACGGTTTGCGTGGT
GAAGCGAGTGGAATCAGTGAGCATGACGGAATGCACGGATAGTTCAAAGG
CGAAAGGTATGCAGTTCAAGAACGGGGGCGTGTCGATGTATTCGACGCGC
GGGGTGGATGTTCGCGACCTGCGCAAGGTTGAGGCGGTGCTTGAGGAGTT
GGGTGTGTGCTCGGAGGAAAGGACTCTGGTTGTGGCGGAAATCATGCTGG
TGTACATGGAGACAGAGCACTCTGACGCGCTGATACGGTTCTTCTCCGGG
TGGTTGAGCGGGGTGCGGGCGTTGGTTGCGATTGAACCCACTGGACGAGA
CAGTGAGTTTGGGAAACAAATGGCGATGAACATTGCGGCGCGCGGGAGCG
CGCTGCGCGGATTGGAGAAGTATCCGAACATGGAGTCGCAAGAGAGGCGG
TTGAAAAGACTGGGGTGGGCGAATGTGAGCGTAGAAAGCCTTTTGCATGG
GTTTGA
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Coding sequence (CDS) from alignment at tig00004384_pilon:385509..386464+

>Gchil8161.t1 ID=Gchil8161.t1|Name=Gchil8161.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=888bp|location=Sequence derived from alignment at tig00004384_pilon:385509..386464+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCGTTGCAGGGAATTGCGAGCGAGAGCAGAGCAACCAGTGATGCGGC
ACTAATCGCGACGAACGACGATGCGTTTGAATCCAAGGTGGCCGCCATGC
GAGCCGGGTACTTTAAGGATGAAGCACTTGCCACAATGGCTGAAAAGTAT
GCGACGCTTGGCACGCGTCGCGGGACGTTGCGACGTCCGCCTGTGATCAA
CCGGGGGACGTATGCGCGTGTGCTACTGAAAGAAACTCTTGTGGAAGCGT
TTCTCACGACGGCGTCTCCGTATGGAAAGATGGCGCAGATCATATCAATC
GGAGCTGGTTTTGATACACAGCCGTTCGCGCTGGTGAAAAACGCGAGTCG
GCTTCGACCGTTTCACTACGTGGAACTTGACTTTGCTGACGTGGTGCGCG
AAAAGACGACTCTTGCGAGCGAAGTATTGTCGGGCGAAGAGTGTTGCTTG
ACGACTGTACGCGACTGTAGCGGGGCTGTGCAAGGCACGGTTTGCGTGGT
GAAGCGAGTGGAATCAGTGAGCATGACGGAATGCACGGATAGTTCAAAGG
CGAAAGGTATGCAGTTCAAGAACGGGGGCGTGTCGATGTATTCGACGCGC
GGGGTGGATGTTCGCGACCTGCGCAAGGTTGAGGCGGTGCTTGAGGAGTT
GGGTGTGTGCTCGGAGGAAAGGACTCTGGTTGTGGCGGAAATCATGCTGG
TGTACATGGAGACAGAGCACTCTGACGCGCTGATACGGTTCTTCTCCGGG
TGGTTGAGCGGGGTGCGGGCGTTGGTTGCGATTGAACCCACTGGACGAGA
CATATCCGAACATGGAGTCGCAAGAGAGGCGGTTGAAAAGACTGGGGTGG
GCGAATGTGAGCGTAGAAAGCCTTTTGCATGGGTTTGA
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