Gchil8158.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil8158.t1
Unique Name	Gchil8158.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	382

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004384_pilon	contig	tig00004384_pilon:379506..380651 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	6326.BUX.s00298.95
PFAMs	M20_dimer,Peptidase_M20,Peptidase_M28
Max annot lvl	33208\|Metazoa
Evalue	3.64e-56
EggNOG OGs	COG0624@1\|root,KOG2275@2759\|Eukaryota,38BH3@33154\|Opisthokonta,3BQ7T@33208\|Metazoa,3D6CZ@33213\|Bilateria,40CR0@6231\|Nematoda,1KVER@119089\|Chromadorea
Description	Peptidase dimerisation domain
COG category	E

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil8158	Gchil8158	Gracilaria chilensis NLEC103_M9 male	gene	tig00004384_pilon 379506..380651 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8158.t1.start1	Gchil8158.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004384_pilon 379506..379508 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8158.t1.CDS1	Gchil8158.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004384_pilon 379506..380651 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8158.t1.exon1	Gchil8158.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004384_pilon 379506..380651 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8158.t1.stop1	Gchil8158.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004384_pilon 380649..380651 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8158.t1	Gchil8158.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004384_pilon 379506..380651 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004384_pilon:379506..380651+
coding sequence from alignment at tig00004384_pilon:379506..380651+

mRNA sequence

>Gchil8158.t1 ID=Gchil8158.t1|Name=Gchil8158.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=382bp
MTAIAAPQNPPSFQQPTSSSSKRGAFFVIALLPLIFLFLTSRRFTPAADV
LTLTHQLVNIPSPSGCEQRALQHAKNWFVARGWQVVTHPVPPSFALLATL
APPSSVRVLLSTHLDVVPGPPQSRVEGERLYGRGAVDAKGQAASLMIAAA
SLADERVAVLLVPREESDHAGMAAAHAFGLPRNITLINAEPTEAKLAEKQ
KGMLKVNLKAKGVSAHSGYPNLGRSAIHSLVKVVSAIVKKWPDSGETTVN
VGIIQGGTASNVLAREATATVLWRVATTVSELVLQLENILSEYDHISYEI
ISRNEPLEFFAPPKAAARFGTCHVAYNTDVPHYKGGYKKAVLFGAGSIEQ
AHTEDEWVYVEQLEKMPKQLEAIISELLHTY*

spliced messenger RNA

>Gchil8158.t1 ID=Gchil8158.t1|Name=Gchil8158.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1146bp|location=Sequence derived from alignment at tig00004384_pilon:379506..380651+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTGCTATAGCCGCGCCCCAGAATCCGCCGTCTTTCCAGCAGCCCAC
GTCATCATCCAGTAAGCGGGGCGCCTTTTTTGTGATTGCtcttcttcctc
ttatcttcctcttcttGACATCACGTCGTTTCACACCCGCCGCAGATGTC
CTTACCCTCACGCATCAGTTGGTCAACATTCCAAGTCCAAGCGGATGCGA
GCAACGTGCGTTGCAACATGCGAAGAACTGGTTCGTCGCGCGAGGTTGGC
AAGTTGTCACACACCCAGTGCCGCCATCCTTCGCACTCCTAGCCACGCTG
GCGCCTCCGTCTTCAGTTCGAGTTTTGCTGTCCACCCATCTAGACGTGGT
TCCTGGCCCTCCCCAGTCTCGCGTGGAGGGAGAGCGACTCTATGGGAGAG
GTGCGGTGGATGCCAAGGGACAGGCTGCTTCCCTCATGATCGCGGCAGCC
AGTTTGGCGGATGAACGTGTTGCTGTTTTGCTTGTTCCTCGCGAGGAGTC
GGATCACGCTGGCATGGCAGCTGCGCATGCTTTTGGGCTGCCAAGGAACA
TTACCTTGATAAATGCCGAACCCACGGAGGCCAAACTGGCGGAGAAACAG
AAAGGAATGCTCAAAGTGAACCTCAAAGCAAAGGGGGTTTCTGCACATAG
TGGTTATCCAAATTTGGGGCGTTCTGCCATTCACTCCCTGGTGAAAGTCG
TCAGTGCTATTGTGAAAAAATGGCCTGATAGCGGTGAAACCACAGTCAAC
GTCGGCATTATCCAGGGCGGAACAGCGTCAAATGTTCTTGCTCGTGAAGC
TACAGCAACTGTACTGTGGCGGGTGGCGACAACGGTGTCTGAACTCGTGT
TGCAATTGGAGAATATATTGTCCGAGTATGATCACATTAGTTATGAGATT
ATTTCAAGGAACGAGCCCTTAGAATTTTTCGCACCACCGAAAGCTGCGGC
TCGGTTCGGTACATGTCACGTCGCGTACAATACGGATGTGCCGCACTACA
AAGGTGGCTACAAGAAGGCGGTACTGTTCGGGGCAGGCAGTATAGAACAA
GCACATACCGAAGATGAATGGGTGTACGTCGAACAACTTGAAAAGATGCC
AAAGCAGCTGGAGGCAATCATATCCGAATTGTTGCATACTTATTAG

protein sequence of Gchil8158.t1

>Gchil8158.t1 ID=Gchil8158.t1|Name=Gchil8158.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=382bp
MTAIAAPQNPPSFQQPTSSSSKRGAFFVIALLPLIFLFLTSRRFTPAADV
LTLTHQLVNIPSPSGCEQRALQHAKNWFVARGWQVVTHPVPPSFALLATL
APPSSVRVLLSTHLDVVPGPPQSRVEGERLYGRGAVDAKGQAASLMIAAA
SLADERVAVLLVPREESDHAGMAAAHAFGLPRNITLINAEPTEAKLAEKQ
KGMLKVNLKAKGVSAHSGYPNLGRSAIHSLVKVVSAIVKKWPDSGETTVN
VGIIQGGTASNVLAREATATVLWRVATTVSELVLQLENILSEYDHISYEI
ISRNEPLEFFAPPKAAARFGTCHVAYNTDVPHYKGGYKKAVLFGAGSIEQ
AHTEDEWVYVEQLEKMPKQLEAIISELLHTY*

mRNA from alignment at tig00004384_pilon:379506..380651+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil8158.t1 ID=Gchil8158.t1|Name=Gchil8158.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1146bp|location=Sequence derived from alignment at tig00004384_pilon:379506..380651+ (Gracilaria chilensis NLEC103_M9 male)
ATGACTGCTATAGCCGCGCCCCAGAATCCGCCGTCTTTCCAGCAGCCCAC
GTCATCATCCAGTAAGCGGGGCGCCTTTTTTGTGATTGCtcttcttcctc
ttatcttcctcttcttGACATCACGTCGTTTCACACCCGCCGCAGATGTC
CTTACCCTCACGCATCAGTTGGTCAACATTCCAAGTCCAAGCGGATGCGA
GCAACGTGCGTTGCAACATGCGAAGAACTGGTTCGTCGCGCGAGGTTGGC
AAGTTGTCACACACCCAGTGCCGCCATCCTTCGCACTCCTAGCCACGCTG
GCGCCTCCGTCTTCAGTTCGAGTTTTGCTGTCCACCCATCTAGACGTGGT
TCCTGGCCCTCCCCAGTCTCGCGTGGAGGGAGAGCGACTCTATGGGAGAG
GTGCGGTGGATGCCAAGGGACAGGCTGCTTCCCTCATGATCGCGGCAGCC
AGTTTGGCGGATGAACGTGTTGCTGTTTTGCTTGTTCCTCGCGAGGAGTC
GGATCACGCTGGCATGGCAGCTGCGCATGCTTTTGGGCTGCCAAGGAACA
TTACCTTGATAAATGCCGAACCCACGGAGGCCAAACTGGCGGAGAAACAG
AAAGGAATGCTCAAAGTGAACCTCAAAGCAAAGGGGGTTTCTGCACATAG
TGGTTATCCAAATTTGGGGCGTTCTGCCATTCACTCCCTGGTGAAAGTCG
TCAGTGCTATTGTGAAAAAATGGCCTGATAGCGGTGAAACCACAGTCAAC
GTCGGCATTATCCAGGGCGGAACAGCGTCAAATGTTCTTGCTCGTGAAGC
TACAGCAACTGTACTGTGGCGGGTGGCGACAACGGTGTCTGAACTCGTGT
TGCAATTGGAGAATATATTGTCCGAGTATGATCACATTAGTTATGAGATT
ATTTCAAGGAACGAGCCCTTAGAATTTTTCGCACCACCGAAAGCTGCGGC
TCGGTTCGGTACATGTCACGTCGCGTACAATACGGATGTGCCGCACTACA
AAGGTGGCTACAAGAAGGCGGTACTGTTCGGGGCAGGCAGTATAGAACAA
GCACATACCGAAGATGAATGGGTGTACGTCGAACAACTTGAAAAGATGCC
AAAGCAGCTGGAGGCAATCATATCCGAATTGTTGCATACTTATTAG

Coding sequence (CDS) from alignment at tig00004384_pilon:379506..380651+

>Gchil8158.t1 ID=Gchil8158.t1|Name=Gchil8158.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1146bp|location=Sequence derived from alignment at tig00004384_pilon:379506..380651+ (Gracilaria chilensis NLEC103_M9 male)
ATGACTGCTATAGCCGCGCCCCAGAATCCGCCGTCTTTCCAGCAGCCCAC
GTCATCATCCAGTAAGCGGGGCGCCTTTTTTGTGATTGCtcttcttcctc
ttatcttcctcttcttGACATCACGTCGTTTCACACCCGCCGCAGATGTC
CTTACCCTCACGCATCAGTTGGTCAACATTCCAAGTCCAAGCGGATGCGA
GCAACGTGCGTTGCAACATGCGAAGAACTGGTTCGTCGCGCGAGGTTGGC
AAGTTGTCACACACCCAGTGCCGCCATCCTTCGCACTCCTAGCCACGCTG
GCGCCTCCGTCTTCAGTTCGAGTTTTGCTGTCCACCCATCTAGACGTGGT
TCCTGGCCCTCCCCAGTCTCGCGTGGAGGGAGAGCGACTCTATGGGAGAG
GTGCGGTGGATGCCAAGGGACAGGCTGCTTCCCTCATGATCGCGGCAGCC
AGTTTGGCGGATGAACGTGTTGCTGTTTTGCTTGTTCCTCGCGAGGAGTC
GGATCACGCTGGCATGGCAGCTGCGCATGCTTTTGGGCTGCCAAGGAACA
TTACCTTGATAAATGCCGAACCCACGGAGGCCAAACTGGCGGAGAAACAG
AAAGGAATGCTCAAAGTGAACCTCAAAGCAAAGGGGGTTTCTGCACATAG
TGGTTATCCAAATTTGGGGCGTTCTGCCATTCACTCCCTGGTGAAAGTCG
TCAGTGCTATTGTGAAAAAATGGCCTGATAGCGGTGAAACCACAGTCAAC
GTCGGCATTATCCAGGGCGGAACAGCGTCAAATGTTCTTGCTCGTGAAGC
TACAGCAACTGTACTGTGGCGGGTGGCGACAACGGTGTCTGAACTCGTGT
TGCAATTGGAGAATATATTGTCCGAGTATGATCACATTAGTTATGAGATT
ATTTCAAGGAACGAGCCCTTAGAATTTTTCGCACCACCGAAAGCTGCGGC
TCGGTTCGGTACATGTCACGTCGCGTACAATACGGATGTGCCGCACTACA
AAGGTGGCTACAAGAAGGCGGTACTGTTCGGGGCAGGCAGTATAGAACAA
GCACATACCGAAGATGAATGGGTGTACGTCGAACAACTTGAAAAGATGCC
AAAGCAGCTGGAGGCAATCATATCCGAATTGTTGCATACTTATTAG