Gchil8144.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil8144.t1
Unique Name	Gchil8144.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	277

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004384_pilon	contig	tig00004384_pilon:189422..190252 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	55529.EKX47858
Preferred name	TBCB
PFAMs	CAP_GLY,Ubiquitin_2
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K10423,ko:K17262
GOs	GO:0000003,GO:0000226,GO:0003006,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005813,GO:0005815,GO:0005819,GO:0005829,GO:0005856,GO:0005938,GO:0006996,GO:0007010,GO:0007017,GO:0007021,GO:0007163,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007308,GO:0007309,GO:0007389,GO:0008150,GO:0009524,GO:0009790,GO:0009791,GO:0009793,GO:0009798,GO:0009987,GO:0009994,GO:0010154,GO:0015630,GO:0016043,GO:0019953,GO:0021700,GO:0022412,GO:0022414,GO:0022607,GO:0030010,GO:0030154,GO:0031122,GO:0032501,GO:0032502,GO:0032504,GO:0034622,GO:0035088,GO:0035089,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0048316,GO:0048468,GO:0048469,GO:0048477,GO:0048599,GO:0048608,GO:0048609,GO:0048731,GO:0048856,GO:0048869,GO:0051301,GO:0051704,GO:0061162,GO:0061245,GO:0061339,GO:0061458,GO:0065003,GO:0071840,GO:0071944,GO:0072686,GO:0097435,GO:0099568
Evalue	8.84e-65
EggNOG OGs	KOG3206@1\|root,KOG3206@2759\|Eukaryota
Description	cell differentiation
COG category	S
BRITE	ko00000,ko04147,ko04812

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil8144	Gchil8144	Gracilaria chilensis NLEC103_M9 male	gene	tig00004384_pilon 189422..190252 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8144.t1.start1	Gchil8144.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004384_pilon 189422..189424 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8144.t1.CDS1	Gchil8144.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004384_pilon 189422..190252 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8144.t1.exon1	Gchil8144.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004384_pilon 189422..190252 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8144.t1.stop1	Gchil8144.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004384_pilon 190250..190252 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8144.t1	Gchil8144.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004384_pilon 189422..190252 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004384_pilon:189422..190252+
coding sequence from alignment at tig00004384_pilon:189422..190252+

mRNA sequence

>Gchil8144.t1 ID=Gchil8144.t1|Name=Gchil8144.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=277bp
MSESYSTPHTLSEVRDYVLRETKGVARSQDTVLLNVHHSNLKQTRLAEIR
FNRHTSVAHVKQRLYLHTGTSAASMQLFLCADGGQLKRKLLDDTVTLADV
AAVTGDSLLIVDDDPFSVSANGAIEDVSLVKKYEMSDQVYDNKQNTYRKF
KQRMREKKPNWSMSTELRKKQPQFALDYADSQPSICVADRVLVSPGAKRG
QVRFVGNALQGLPDGWWIGVCYDEPLGKNDGMVKGVRYFECDPNYGALVR
PSAVQVGDFPPLDDFEVDDDDSEDEI*

spliced messenger RNA

>Gchil8144.t1 ID=Gchil8144.t1|Name=Gchil8144.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=831bp|location=Sequence derived from alignment at tig00004384_pilon:189422..190252+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCGAGTCGTACTCCACTCCCCACACGCTATCAGAAGTGCGAGATTA
CGTGCTACGCGAAACCAAAGGAGTCGCCCGCTCTCAAGACACCGTTCTTC
TCAACGTTCACCACTCAAACCTTAAGCAAACCCGACTCGCCGAGATTCGT
TTCAACCGCCACACTTCGGTCGCACATGTCAAGCAGCGCTTGTACCTTCA
CACCGGAACCTCTGCCGCATCTATGCAGCTCTTCTTGTGTGCGGACGGCG
GCCAGCTCAAGAGGAAACTGCTCGACGACACTGTGACTTTGGCAGACGTT
GCCGCCGTCACCGGTGATTCTTTGCTCATTGTCGACGATGACCCTTTCTC
CGTGAGCGCAAACGGCGCTATCGAAGACGTTTCTCTCGTCAAAAAGTATG
AGATGTCCGATCAGGTGTATGACAACAAGCAGAATACCTACCGAAAGTTC
AAACAGAGAATGAGGGAAAAGAAGCCTAACTGGAGCATGTCTACGGAGCT
TCGCAAAAAGCAACCTCAGTTTGCTCTCGATTACGCAGACAGTCAGCCGT
CAATTTGCGTGGCAGATCGCGTTTTGGTCTCGCCGGGCGCCAAGAGAGGC
CAGGTGCGCTTCGTTGGCAATGCGCTGCAGGGCCTTCCCGATGGCTGGTG
GATTGGCGTTTGTTACGATGAACCACTTGGGAAGAATGATGGCATGGTAA
AAGGCGTCAGATACTTTGAGTGTGACCCCAACTATGGCGCCTTGGTTCGT
CCCTCTGCTGTGCAGGTCGGTGACTTTCCACCATTGGATGATTTCGAAGT
AGATGACGATGACAGCGAGGACGAAATCTGA

protein sequence of Gchil8144.t1

>Gchil8144.t1 ID=Gchil8144.t1|Name=Gchil8144.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=277bp
MSESYSTPHTLSEVRDYVLRETKGVARSQDTVLLNVHHSNLKQTRLAEIR
FNRHTSVAHVKQRLYLHTGTSAASMQLFLCADGGQLKRKLLDDTVTLADV
AAVTGDSLLIVDDDPFSVSANGAIEDVSLVKKYEMSDQVYDNKQNTYRKF
KQRMREKKPNWSMSTELRKKQPQFALDYADSQPSICVADRVLVSPGAKRG
QVRFVGNALQGLPDGWWIGVCYDEPLGKNDGMVKGVRYFECDPNYGALVR
PSAVQVGDFPPLDDFEVDDDDSEDEI*

mRNA from alignment at tig00004384_pilon:189422..190252+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil8144.t1 ID=Gchil8144.t1|Name=Gchil8144.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=831bp|location=Sequence derived from alignment at tig00004384_pilon:189422..190252+ (Gracilaria chilensis NLEC103_M9 male)
ATGAGCGAGTCGTACTCCACTCCCCACACGCTATCAGAAGTGCGAGATTA
CGTGCTACGCGAAACCAAAGGAGTCGCCCGCTCTCAAGACACCGTTCTTC
TCAACGTTCACCACTCAAACCTTAAGCAAACCCGACTCGCCGAGATTCGT
TTCAACCGCCACACTTCGGTCGCACATGTCAAGCAGCGCTTGTACCTTCA
CACCGGAACCTCTGCCGCATCTATGCAGCTCTTCTTGTGTGCGGACGGCG
GCCAGCTCAAGAGGAAACTGCTCGACGACACTGTGACTTTGGCAGACGTT
GCCGCCGTCACCGGTGATTCTTTGCTCATTGTCGACGATGACCCTTTCTC
CGTGAGCGCAAACGGCGCTATCGAAGACGTTTCTCTCGTCAAAAAGTATG
AGATGTCCGATCAGGTGTATGACAACAAGCAGAATACCTACCGAAAGTTC
AAACAGAGAATGAGGGAAAAGAAGCCTAACTGGAGCATGTCTACGGAGCT
TCGCAAAAAGCAACCTCAGTTTGCTCTCGATTACGCAGACAGTCAGCCGT
CAATTTGCGTGGCAGATCGCGTTTTGGTCTCGCCGGGCGCCAAGAGAGGC
CAGGTGCGCTTCGTTGGCAATGCGCTGCAGGGCCTTCCCGATGGCTGGTG
GATTGGCGTTTGTTACGATGAACCACTTGGGAAGAATGATGGCATGGTAA
AAGGCGTCAGATACTTTGAGTGTGACCCCAACTATGGCGCCTTGGTTCGT
CCCTCTGCTGTGCAGGTCGGTGACTTTCCACCATTGGATGATTTCGAAGT
AGATGACGATGACAGCGAGGACGAAATCTGA

Coding sequence (CDS) from alignment at tig00004384_pilon:189422..190252+

>Gchil8144.t1 ID=Gchil8144.t1|Name=Gchil8144.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=831bp|location=Sequence derived from alignment at tig00004384_pilon:189422..190252+ (Gracilaria chilensis NLEC103_M9 male)
ATGAGCGAGTCGTACTCCACTCCCCACACGCTATCAGAAGTGCGAGATTA
CGTGCTACGCGAAACCAAAGGAGTCGCCCGCTCTCAAGACACCGTTCTTC
TCAACGTTCACCACTCAAACCTTAAGCAAACCCGACTCGCCGAGATTCGT
TTCAACCGCCACACTTCGGTCGCACATGTCAAGCAGCGCTTGTACCTTCA
CACCGGAACCTCTGCCGCATCTATGCAGCTCTTCTTGTGTGCGGACGGCG
GCCAGCTCAAGAGGAAACTGCTCGACGACACTGTGACTTTGGCAGACGTT
GCCGCCGTCACCGGTGATTCTTTGCTCATTGTCGACGATGACCCTTTCTC
CGTGAGCGCAAACGGCGCTATCGAAGACGTTTCTCTCGTCAAAAAGTATG
AGATGTCCGATCAGGTGTATGACAACAAGCAGAATACCTACCGAAAGTTC
AAACAGAGAATGAGGGAAAAGAAGCCTAACTGGAGCATGTCTACGGAGCT
TCGCAAAAAGCAACCTCAGTTTGCTCTCGATTACGCAGACAGTCAGCCGT
CAATTTGCGTGGCAGATCGCGTTTTGGTCTCGCCGGGCGCCAAGAGAGGC
CAGGTGCGCTTCGTTGGCAATGCGCTGCAGGGCCTTCCCGATGGCTGGTG
GATTGGCGTTTGTTACGATGAACCACTTGGGAAGAATGATGGCATGGTAA
AAGGCGTCAGATACTTTGAGTGTGACCCCAACTATGGCGCCTTGGTTCGT
CCCTCTGCTGTGCAGGTCGGTGACTTTCCACCATTGGATGATTTCGAAGT
AGATGACGATGACAGCGAGGACGAAATCTGA