Gchil8138.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil8138.t1
Unique NameGchil8138.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length295
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004384_piloncontigtig00004384_pilon:119452..121095 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMD118CT
PFAMsACP_syn_III_C,Chal_sti_synt_C,FAE1_CUT1_RppA
Max annot lvl2759|Eukaryota
KEGG rclassRC00004,RC02888,RC02997
KEGG koko:K15397
KEGG ReactionR09419,R10825
KEGG Pathwayko00062,ko01110,map00062,map01110
KEGG ModuleM00415
Evalue1.07e-64
EggNOG OGsCOG3424@1|root,2QPKZ@2759|Eukaryota
EC2.3.1.199
Descriptionvery-long-chain 3-ketoacyl-CoA synthase activity
COG categoryQ
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8138Gchil8138Gracilaria chilensis NLEC103_M9 malegenetig00004384_pilon 119452..121095 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8138.t1Gchil8138.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004384_pilon 119452..121095 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8138.t1.start1Gchil8138.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004384_pilon 119452..119454 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8138.t1.CDS1Gchil8138.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004384_pilon 119452..119820 +
Gchil8138.t1.CDS2Gchil8138.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004384_pilon 120580..121095 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8138.t1.exon1Gchil8138.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004384_pilon 119452..119820 +
Gchil8138.t1.exon2Gchil8138.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004384_pilon 120580..121095 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8138.t1.intron1Gchil8138.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004384_pilon 119821..120579 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8138.t1.stop1Gchil8138.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004384_pilon 121093..121095 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil8138.t1 ID=Gchil8138.t1|Name=Gchil8138.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=295bp
MPTLDNNSPSTIRRRNASERSPENGSTLYSLAESTRLAWERVRRLYATDP
NARAYSFADVRRGYNSYDPFTSKRIVGALCCALVVTLIPDAYSKREHLGR
LAQDLLRARIADIALACAVLSALDKTGIRGVKLSKNIMDVAGGALKKNVT
TLAPLVFPLTEHIKFGVHLLRKKVVGQQLEPYVPDFHIAFQHFCIHTGGR
AVIDVMQEALKLSKQDVEASRYVLRRYGNTSSASVWYELKFHEDMGRVRR
GDRVWQIAFGSGFKCNSAVWECVQNVDGAAEMICEQALTAVRSE*
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spliced messenger RNA

>Gchil8138.t1 ID=Gchil8138.t1|Name=Gchil8138.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=885bp|location=Sequence derived from alignment at tig00004384_pilon:119452..121095+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCACCTTGGACAATAACTCTCCTTCCACCATCCGCCGCCGAAACGC
CTCGGAGCGCTCGCCTGAAAATGGTTCCACCTTGTACAGCCTGGCCGAAT
CCACGCGTCTGGCTTGGGAGCGCGTCCGCCGACTGTACGCCACGGATCCG
AACGCGCGAGCCTACTCGTTTGCTGATGTGCGACGTGGATACAACTCTTA
TGACCCGTTTACTTCCAAGAGGATTGTAGGCGCGCTGTGCTGCGCGCTGG
TGGTCACGCTGATTCCGGACGCCTACTCCAAGAGAGAGCATCTCGGTCGT
TTGGCTCAGGACTTGTTGCGTGCGCGAATCGCAGACATTGCGCTGGCCTG
TGCCGTTCTTTCTGCGCTGGACAAGACAGGCATTCGCGGGGTGAAGCTGT
CGAAAAACATCATGGACGTGGCCGGCGGGGCGCTCAAGAAGAACGTGACA
ACGCTGGCGCCGCTGGTGTTCCCGTTGACGGAGCACATCAAGTTTGGGGT
GCACCTGCTGCGCAAAAAGGTTGTGGGGCAACAGCTGGAGCCGTACGTGC
CTGACTTTCACATTGCGTTCCAGCACTTTTGCATCCACACGGGCGGGAGG
GCGGTGATCGACGTGATGCAAGAGGCGCTCAAGTTGAGCAAGCAGGACGT
GGAAGCAAGCCGGTACGTGCTGAGACGGTACGGCAACACGTCGTCGGCGT
CGGTGTGGTACGAGCTCAAGTTCCACGAGGACATGGGGCGGGTGCGACGC
GGCGACCGGGTGTGGCAGATAGCGTTTGGCTCGGGGTTCAAGTGCAACTC
GGCGGTGTGGGAGTGCGTGCAGAACGTGGACGGGGCGGCGGAGATGATTT
GCGAGCAGGCGCTGACGGCCGTGCGCAGCGAGTGA
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protein sequence of Gchil8138.t1

>Gchil8138.t1 ID=Gchil8138.t1|Name=Gchil8138.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=295bp
MPTLDNNSPSTIRRRNASERSPENGSTLYSLAESTRLAWERVRRLYATDP
NARAYSFADVRRGYNSYDPFTSKRIVGALCCALVVTLIPDAYSKREHLGR
LAQDLLRARIADIALACAVLSALDKTGIRGVKLSKNIMDVAGGALKKNVT
TLAPLVFPLTEHIKFGVHLLRKKVVGQQLEPYVPDFHIAFQHFCIHTGGR
AVIDVMQEALKLSKQDVEASRYVLRRYGNTSSASVWYELKFHEDMGRVRR
GDRVWQIAFGSGFKCNSAVWECVQNVDGAAEMICEQALTAVRSE*
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mRNA from alignment at tig00004384_pilon:119452..121095+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil8138.t1 ID=Gchil8138.t1|Name=Gchil8138.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1644bp|location=Sequence derived from alignment at tig00004384_pilon:119452..121095+ (Gracilaria chilensis NLEC103_M9 male)
ATGCCCACCTTGGACAATAACTCTCCTTCCACCATCCGCCGCCGAAACGC
CTCGGAGCGCTCGCCTGAAAATGGTTCCACCTTGTACAGCCTGGCCGAAT
CCACGCGTCTGGCTTGGGAGCGCGTCCGCCGACTGTACGCCACGGATCCG
AACGCGCGAGCCTACTCGTTTGCTGATGTGCGACGTGGATACAACTCTTA
TGACCCGTTTACTTCCAAGAGGATTGTAGGCGCGCTGTGCTGCGCGCTGG
TGGTCACGCTGATTCCGGACGCCTACTCCAAGAGAGAGCATCTCGGTCGT
TTGGCTCAGGACTTGTTGCGTGCGCGAATCGCAGACATTGCGCTGGCCTG
TGCCGTTCTTTCTGCGCTGGTGCTTGTGTACAACTTTCGCAAACCATACC
CCGTGTTTCTCATCGACATAGAGACGTTTCAACCGCCTGAacggtaccac
gttagcgcggatcgtttcatgaagaccacgctggccgcgaacaagtttga
cgaagactcgatagcgttccagaaaaagcttttgggacgtagtggaatag
gtggtaaaagcgcttttccagccggtgtccttgaacactgccataccatt
gccgacaacggcggcgacgagagaagcgtgtgtaacatgcattttgcgag
ggaggaggcggaactggtgttgttcagttgcatggatgcgctgttgctgc
gaaacaatttggaccccaaagccatcgatttgctggtggtgaattgctcc
ttgttcaacccgacgccaagcctttcggcgatgcttgtgaacaagtacaa
aatgaaaagttcagttcgcacgtacaacttggctgggatgggatgctctg
cggggcttatctcggtagacttggccaaggacttgttgcaggtgcaccgc
aattcaatttgcgtggttgtgtcgacggaaaacatcacgcagaactggta
cctcgggcgagagcggtccatgctgatcacaaacacgctgtttcgcatgg
gcggggcggcggtttttctgagcaacaagagcagtgacaagtggcgcgct
cggtacatgctcaagcacacggtgcggacgcaCGTCGGGGCGGACGACTT
GGCGTACGATTCCATCTTTCAAATGGAGGACAAGACAGGCATTCGCGGGG
TGAAGCTGTCGAAAAACATCATGGACGTGGCCGGCGGGGCGCTCAAGAAG
AACGTGACAACGCTGGCGCCGCTGGTGTTCCCGTTGACGGAGCACATCAA
GTTTGGGGTGCACCTGCTGCGCAAAAAGGTTGTGGGGCAACAGCTGGAGC
CGTACGTGCCTGACTTTCACATTGCGTTCCAGCACTTTTGCATCCACACG
GGCGGGAGGGCGGTGATCGACGTGATGCAAGAGGCGCTCAAGTTGAGCAA
GCAGGACGTGGAAGCAAGCCGGTACGTGCTGAGACGGTACGGCAACACGT
CGTCGGCGTCGGTGTGGTACGAGCTCAAGTTCCACGAGGACATGGGGCGG
GTGCGACGCGGCGACCGGGTGTGGCAGATAGCGTTTGGCTCGGGGTTCAA
GTGCAACTCGGCGGTGTGGGAGTGCGTGCAGAACGTGGACGGGGCGGCGG
AGATGATTTGCGAGCAGGCGCTGACGGCCGTGCGCAGCGAGTGA
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Coding sequence (CDS) from alignment at tig00004384_pilon:119452..121095+

>Gchil8138.t1 ID=Gchil8138.t1|Name=Gchil8138.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=885bp|location=Sequence derived from alignment at tig00004384_pilon:119452..121095+ (Gracilaria chilensis NLEC103_M9 male)
ATGCCCACCTTGGACAATAACTCTCCTTCCACCATCCGCCGCCGAAACGC
CTCGGAGCGCTCGCCTGAAAATGGTTCCACCTTGTACAGCCTGGCCGAAT
CCACGCGTCTGGCTTGGGAGCGCGTCCGCCGACTGTACGCCACGGATCCG
AACGCGCGAGCCTACTCGTTTGCTGATGTGCGACGTGGATACAACTCTTA
TGACCCGTTTACTTCCAAGAGGATTGTAGGCGCGCTGTGCTGCGCGCTGG
TGGTCACGCTGATTCCGGACGCCTACTCCAAGAGAGAGCATCTCGGTCGT
TTGGCTCAGGACTTGTTGCGTGCGCGAATCGCAGACATTGCGCTGGCCTG
TGCCGTTCTTTCTGCGCTGGACAAGACAGGCATTCGCGGGGTGAAGCTGT
CGAAAAACATCATGGACGTGGCCGGCGGGGCGCTCAAGAAGAACGTGACA
ACGCTGGCGCCGCTGGTGTTCCCGTTGACGGAGCACATCAAGTTTGGGGT
GCACCTGCTGCGCAAAAAGGTTGTGGGGCAACAGCTGGAGCCGTACGTGC
CTGACTTTCACATTGCGTTCCAGCACTTTTGCATCCACACGGGCGGGAGG
GCGGTGATCGACGTGATGCAAGAGGCGCTCAAGTTGAGCAAGCAGGACGT
GGAAGCAAGCCGGTACGTGCTGAGACGGTACGGCAACACGTCGTCGGCGT
CGGTGTGGTACGAGCTCAAGTTCCACGAGGACATGGGGCGGGTGCGACGC
GGCGACCGGGTGTGGCAGATAGCGTTTGGCTCGGGGTTCAAGTGCAACTC
GGCGGTGTGGGAGTGCGTGCAGAACGTGGACGGGGCGGCGGAGATGATTT
GCGAGCAGGCGCTGACGGCCGTGCGCAGCGAGTGA
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