Gchil8135.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil8135.t1
Unique NameGchil8135.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length328
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004384_piloncontigtig00004384_pilon:112998..113981 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog192875.XP_004364279.1
Preferred nameDEPTOR
PFAMsDEP
Max annot lvl2759|Eukaryota
KEGG koko:K20402
KEGG Pathwayko04140,ko04150,map04140,map04150
GOsGO:0001932,GO:0001933,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006469,GO:0008150,GO:0008361,GO:0009892,GO:0009966,GO:0009968,GO:0009987,GO:0010563,GO:0010605,GO:0010646,GO:0010648,GO:0010941,GO:0016043,GO:0019220,GO:0019222,GO:0023051,GO:0023057,GO:0031323,GO:0031324,GO:0031399,GO:0031400,GO:0032006,GO:0032007,GO:0032268,GO:0032269,GO:0032535,GO:0033673,GO:0042325,GO:0042326,GO:0042981,GO:0043067,GO:0043086,GO:0043549,GO:0044092,GO:0044424,GO:0044464,GO:0045792,GO:0045859,GO:0045936,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050790,GO:0050794,GO:0051171,GO:0051172,GO:0051174,GO:0051246,GO:0051248,GO:0051338,GO:0051348,GO:0060255,GO:0065007,GO:0065008,GO:0065009,GO:0071840,GO:0080090,GO:0090066,GO:1902531,GO:1902532,GO:2001233,GO:2001236
Evalue1.46e-16
EggNOG OGs28JRH@1|root,2QS4Y@2759|Eukaryota
Descriptionnegative regulation of cell size
COG categoryS
BRITEko00000,ko00001,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8135Gchil8135Gracilaria chilensis NLEC103_M9 malegenetig00004384_pilon 112998..113981 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8135.t1.stop1Gchil8135.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004384_pilon 112998..113000 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8135.t1.CDS1Gchil8135.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004384_pilon 112998..113981 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8135.t1.exon1Gchil8135.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004384_pilon 112998..113981 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8135.t1.start1Gchil8135.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004384_pilon 113979..113981 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8135.t1Gchil8135.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004384_pilon 112998..113981 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil8135.t1 ID=Gchil8135.t1|Name=Gchil8135.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=328bp
MATNASGIFLYVQVRVVGVVQHMLVPKMLHQIQVGDRHFLFRKYRRCFSG
TDAVRFFLAKRFARNEHEALAIGNALLKAGVLRHVRNEHLFRNGDYFYRF
AAHEDYAVEDETVNLRSSRMMSVACNSYMRMPEISRVDTGPIMSATNYSD
ATFFSYEDYSLTDDRPEFDETDIVVETGIRIGRRVFPNLVSNFTHAKDLI
GTNSNKGKILEKSFTGRAAVKWLVRHRYANDNPEAISIGNAMLSSGVFYP
LENDSDAGFDANLIHYRMMADTDISKELKRGARKDMFLRMLGVNRAKSGA
SVHQQQTPWFEDPISFSFTSTSSAGIR*
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spliced messenger RNA

>Gchil8135.t1 ID=Gchil8135.t1|Name=Gchil8135.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=984bp|location=Sequence derived from alignment at tig00004384_pilon:112998..113981- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTACCAACGCCTCCGGTATCTTTCTGTACGTGCAGGTCCGCGTTGT
AGGCGTCGTGCAACACATGCTCGTGCCCAAGATGCTGCACCAAATTCAAG
TCGGTGATAGACACTTTTTGTTTCGAAAGTATAGGCGTTGCTTCTCTGGT
ACCGATGCCGTACGTTTCTTTCTGGCAAAGAGATTTGCTCGCAACGAGCA
CGAAGCGCTTGCAATCGGCAATGCGCTGCTCAAGGCCGGCGTCTTAAGAC
ACGTCCGCAACGAGCATCTTTTTCGCAACGGCGACTACTTCTACAGGTTT
GCTGCCCACGAGGACTACGCAGTTGAGGATGAAACAGTCAACCTCAGGAG
TTCGCGTATGATGAGCGTCGCCTGCAACTCGTACATGAGAATGCCCGAGA
TCTCACGCGTCGACACCGGTCCGATTATGTCCGCCACCAATTATAGCGAT
GCCACCTTTTTTTCGTACGAGGACTATTCTCTCACCGATGATCGTCCTGA
GTTTGATGAGACCGATATCGTTGTTGAGACGGGTATTCGTATTGGAAGAA
GAGTTTTTCCTAATCTGGTGTCTAACTTTACGCATGCAAAGGACCTTATT
GGAACCAATTCCAACAAAGGCAAGATACTGGAAAAATCCTTTACTGGCAG
AGCTGCAGTTAAATGGCTTGTTCGCCATAGATACGCCAACGACAATCCAG
AGGCTATCAGCATTGGCAACGCCATGCTTTCCTCCGGTGTTTTCTATCCG
CTTGAAAACGACTCCGATGCAGGCTTTGATGCCAACTTGATTCACTATAG
AATGATGGCCGACACTGATATATCCAAAGAGCTCAAACGAGGGGCTCGCA
AGGACATGTTTTTGAGAATGCTTGGCGTCAATAGGGCCAAGTCAGGCGCT
AGCGTGCATCAGCAACAAACGCCCTGGTTCGAGGATCCTATCTCCTTTTC
TTTTACCTCTACAAGTAGCGCTGGCATCCGATGA
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protein sequence of Gchil8135.t1

>Gchil8135.t1 ID=Gchil8135.t1|Name=Gchil8135.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=328bp
MATNASGIFLYVQVRVVGVVQHMLVPKMLHQIQVGDRHFLFRKYRRCFSG
TDAVRFFLAKRFARNEHEALAIGNALLKAGVLRHVRNEHLFRNGDYFYRF
AAHEDYAVEDETVNLRSSRMMSVACNSYMRMPEISRVDTGPIMSATNYSD
ATFFSYEDYSLTDDRPEFDETDIVVETGIRIGRRVFPNLVSNFTHAKDLI
GTNSNKGKILEKSFTGRAAVKWLVRHRYANDNPEAISIGNAMLSSGVFYP
LENDSDAGFDANLIHYRMMADTDISKELKRGARKDMFLRMLGVNRAKSGA
SVHQQQTPWFEDPISFSFTSTSSAGIR*
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mRNA from alignment at tig00004384_pilon:112998..113981-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil8135.t1 ID=Gchil8135.t1|Name=Gchil8135.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=984bp|location=Sequence derived from alignment at tig00004384_pilon:112998..113981- (Gracilaria chilensis NLEC103_M9 male)
ATGGCTACCAACGCCTCCGGTATCTTTCTGTACGTGCAGGTCCGCGTTGT
AGGCGTCGTGCAACACATGCTCGTGCCCAAGATGCTGCACCAAATTCAAG
TCGGTGATAGACACTTTTTGTTTCGAAAGTATAGGCGTTGCTTCTCTGGT
ACCGATGCCGTACGTTTCTTTCTGGCAAAGAGATTTGCTCGCAACGAGCA
CGAAGCGCTTGCAATCGGCAATGCGCTGCTCAAGGCCGGCGTCTTAAGAC
ACGTCCGCAACGAGCATCTTTTTCGCAACGGCGACTACTTCTACAGGTTT
GCTGCCCACGAGGACTACGCAGTTGAGGATGAAACAGTCAACCTCAGGAG
TTCGCGTATGATGAGCGTCGCCTGCAACTCGTACATGAGAATGCCCGAGA
TCTCACGCGTCGACACCGGTCCGATTATGTCCGCCACCAATTATAGCGAT
GCCACCTTTTTTTCGTACGAGGACTATTCTCTCACCGATGATCGTCCTGA
GTTTGATGAGACCGATATCGTTGTTGAGACGGGTATTCGTATTGGAAGAA
GAGTTTTTCCTAATCTGGTGTCTAACTTTACGCATGCAAAGGACCTTATT
GGAACCAATTCCAACAAAGGCAAGATACTGGAAAAATCCTTTACTGGCAG
AGCTGCAGTTAAATGGCTTGTTCGCCATAGATACGCCAACGACAATCCAG
AGGCTATCAGCATTGGCAACGCCATGCTTTCCTCCGGTGTTTTCTATCCG
CTTGAAAACGACTCCGATGCAGGCTTTGATGCCAACTTGATTCACTATAG
AATGATGGCCGACACTGATATATCCAAAGAGCTCAAACGAGGGGCTCGCA
AGGACATGTTTTTGAGAATGCTTGGCGTCAATAGGGCCAAGTCAGGCGCT
AGCGTGCATCAGCAACAAACGCCCTGGTTCGAGGATCCTATCTCCTTTTC
TTTTACCTCTACAAGTAGCGCTGGCATCCGATGA
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Coding sequence (CDS) from alignment at tig00004384_pilon:112998..113981-

>Gchil8135.t1 ID=Gchil8135.t1|Name=Gchil8135.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=984bp|location=Sequence derived from alignment at tig00004384_pilon:112998..113981- (Gracilaria chilensis NLEC103_M9 male)
ATGGCTACCAACGCCTCCGGTATCTTTCTGTACGTGCAGGTCCGCGTTGT
AGGCGTCGTGCAACACATGCTCGTGCCCAAGATGCTGCACCAAATTCAAG
TCGGTGATAGACACTTTTTGTTTCGAAAGTATAGGCGTTGCTTCTCTGGT
ACCGATGCCGTACGTTTCTTTCTGGCAAAGAGATTTGCTCGCAACGAGCA
CGAAGCGCTTGCAATCGGCAATGCGCTGCTCAAGGCCGGCGTCTTAAGAC
ACGTCCGCAACGAGCATCTTTTTCGCAACGGCGACTACTTCTACAGGTTT
GCTGCCCACGAGGACTACGCAGTTGAGGATGAAACAGTCAACCTCAGGAG
TTCGCGTATGATGAGCGTCGCCTGCAACTCGTACATGAGAATGCCCGAGA
TCTCACGCGTCGACACCGGTCCGATTATGTCCGCCACCAATTATAGCGAT
GCCACCTTTTTTTCGTACGAGGACTATTCTCTCACCGATGATCGTCCTGA
GTTTGATGAGACCGATATCGTTGTTGAGACGGGTATTCGTATTGGAAGAA
GAGTTTTTCCTAATCTGGTGTCTAACTTTACGCATGCAAAGGACCTTATT
GGAACCAATTCCAACAAAGGCAAGATACTGGAAAAATCCTTTACTGGCAG
AGCTGCAGTTAAATGGCTTGTTCGCCATAGATACGCCAACGACAATCCAG
AGGCTATCAGCATTGGCAACGCCATGCTTTCCTCCGGTGTTTTCTATCCG
CTTGAAAACGACTCCGATGCAGGCTTTGATGCCAACTTGATTCACTATAG
AATGATGGCCGACACTGATATATCCAAAGAGCTCAAACGAGGGGCTCGCA
AGGACATGTTTTTGAGAATGCTTGGCGTCAATAGGGCCAAGTCAGGCGCT
AGCGTGCATCAGCAACAAACGCCCTGGTTCGAGGATCCTATCTCCTTTTC
TTTTACCTCTACAAGTAGCGCTGGCATCCGATGA
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