Gchil8125.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil8125.t1
Unique Name	Gchil8125.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	286

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004384_pilon	contig	tig00004384_pilon:84519..85376 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1227500.C494_07375
Preferred name	dnaJ
PFAMs	DnaJ,DnaJ_C,DnaJ_CXXCXGXG
Max annot lvl	183963\|Halobacteria
KEGG ko	ko:K03686
Evalue	3.82e-05
EggNOG OGs	COG0484@1\|root,arCOG02846@2157\|Archaea,2XV5D@28890\|Euryarchaeota,23S61@183963\|Halobacteria
Description	ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins
COG category	O
BRITE	ko00000,ko03029,ko03110

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil8125	Gchil8125	Gracilaria chilensis NLEC103_M9 male	gene	tig00004384_pilon 84519..85376 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8125.t1.start1	Gchil8125.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004384_pilon 84519..84521 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8125.t1.CDS1	Gchil8125.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004384_pilon 84519..85376 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8125.t1.exon1	Gchil8125.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004384_pilon 84519..85376 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8125.t1.stop1	Gchil8125.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004384_pilon 85374..85376 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8125.t1	Gchil8125.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004384_pilon 84519..85376 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004384_pilon:84519..85376+
coding sequence from alignment at tig00004384_pilon:84519..85376+

mRNA sequence

>Gchil8125.t1 ID=Gchil8125.t1|Name=Gchil8125.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=286bp
MVDEQTSKEDINGQQLIEATLTKLDLDATPFEELQLARVVTRKQQQITFV
NYNSDQDDSDSDEEDGRLITTREYHDNGQPRLFKTFQRLNDHSGMPYRRI
VEEKHFDIGGVCRVDVHFAVGQPYLYRKHYWHNQQLKSESVFMVDDEVTM
SCKKWGHWRTYYESGNIKTELQYRDGVRYGFCKRYAPDGAVEWVKDYTKQ
YLDRIENFNEKKGKVSFSIMDACDVLGFESLPGSMKEVSSQYRTKCALFH
PDKTPDPNAAEEFTKISRARDVLKDYFENHSHPPQ*

spliced messenger RNA

>Gchil8125.t1 ID=Gchil8125.t1|Name=Gchil8125.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=858bp|location=Sequence derived from alignment at tig00004384_pilon:84519..85376+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGGACGAGCAGACCTCCAAAGAGGATATCAACGGCCAGCAACTTAT
TGAGGCCACGCTGACTAAGCTCGACCTCGACGCTACGCCCTTTGAAGAAC
TCCAACTCGCTCGAGTCGTGACGAGAAAGCAACAGCAAATCACATTTGTC
AACTACAATTCTGATCAGGATGACTCCGACTCAGATGAAGAAGATGGCAG
ATTAATTACCACAAGAGAGTATCACGACAACGGCCAGCCTCGTTTGTTCA
AGACGTTTCAACGTCTCAATGACCACTCCGGAATGCCCTACAGGCGAATT
GTGGAGGAAAAGCATTTCGATATTGGGGGTGTTTGTCGAGTCGATGTTCA
CTTCGCCGTCGGTCAACCCTATCTTTACCGAAAGCACTACTGGCATAATC
AACAGCTGAAGTCCGAGTCCGTGTTCATGGTGGATGATGAAGTGACCATG
AGCTGTAAGAAATGGGGCCACTGGCGAACATACTACGAATCCGGTAACAT
TAAGACAGAGCTGCAATATCGAGATGGTGTTCGTTATGGATTTTGCAAAC
GATATGCTCCAGACGGAGCCGTGGAATGGGTGAAGGATTATACCAAGCAA
TACTTGGACCGCATTGAGAACTTTAACGAGAAGAAAGGAAAAGTGTCCTT
TTCCATCATGGACGCGTGTGACGTTCTTGGTTTCGAATCCCTGCCGGGCT
CTATGAAGGAAGTTAGTTCTCAGTATCGCACAAAATGTGCCCTTTTCCAC
CCCGATAAAACCCCGGACCCCAATGCTGCCGAAGAGTTCACCAAAATCAG
CCGAGCCCGTGACGTTCTAAAGGATTATTTTGAGAACCATAGTCATCCTC
CCCAGTGA

protein sequence of Gchil8125.t1

>Gchil8125.t1 ID=Gchil8125.t1|Name=Gchil8125.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=286bp
MVDEQTSKEDINGQQLIEATLTKLDLDATPFEELQLARVVTRKQQQITFV
NYNSDQDDSDSDEEDGRLITTREYHDNGQPRLFKTFQRLNDHSGMPYRRI
VEEKHFDIGGVCRVDVHFAVGQPYLYRKHYWHNQQLKSESVFMVDDEVTM
SCKKWGHWRTYYESGNIKTELQYRDGVRYGFCKRYAPDGAVEWVKDYTKQ
YLDRIENFNEKKGKVSFSIMDACDVLGFESLPGSMKEVSSQYRTKCALFH
PDKTPDPNAAEEFTKISRARDVLKDYFENHSHPPQ*

mRNA from alignment at tig00004384_pilon:84519..85376+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil8125.t1 ID=Gchil8125.t1|Name=Gchil8125.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=858bp|location=Sequence derived from alignment at tig00004384_pilon:84519..85376+ (Gracilaria chilensis NLEC103_M9 male)
ATGGTGGACGAGCAGACCTCCAAAGAGGATATCAACGGCCAGCAACTTAT
TGAGGCCACGCTGACTAAGCTCGACCTCGACGCTACGCCCTTTGAAGAAC
TCCAACTCGCTCGAGTCGTGACGAGAAAGCAACAGCAAATCACATTTGTC
AACTACAATTCTGATCAGGATGACTCCGACTCAGATGAAGAAGATGGCAG
ATTAATTACCACAAGAGAGTATCACGACAACGGCCAGCCTCGTTTGTTCA
AGACGTTTCAACGTCTCAATGACCACTCCGGAATGCCCTACAGGCGAATT
GTGGAGGAAAAGCATTTCGATATTGGGGGTGTTTGTCGAGTCGATGTTCA
CTTCGCCGTCGGTCAACCCTATCTTTACCGAAAGCACTACTGGCATAATC
AACAGCTGAAGTCCGAGTCCGTGTTCATGGTGGATGATGAAGTGACCATG
AGCTGTAAGAAATGGGGCCACTGGCGAACATACTACGAATCCGGTAACAT
TAAGACAGAGCTGCAATATCGAGATGGTGTTCGTTATGGATTTTGCAAAC
GATATGCTCCAGACGGAGCCGTGGAATGGGTGAAGGATTATACCAAGCAA
TACTTGGACCGCATTGAGAACTTTAACGAGAAGAAAGGAAAAGTGTCCTT
TTCCATCATGGACGCGTGTGACGTTCTTGGTTTCGAATCCCTGCCGGGCT
CTATGAAGGAAGTTAGTTCTCAGTATCGCACAAAATGTGCCCTTTTCCAC
CCCGATAAAACCCCGGACCCCAATGCTGCCGAAGAGTTCACCAAAATCAG
CCGAGCCCGTGACGTTCTAAAGGATTATTTTGAGAACCATAGTCATCCTC
CCCAGTGA

Coding sequence (CDS) from alignment at tig00004384_pilon:84519..85376+

>Gchil8125.t1 ID=Gchil8125.t1|Name=Gchil8125.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=858bp|location=Sequence derived from alignment at tig00004384_pilon:84519..85376+ (Gracilaria chilensis NLEC103_M9 male)
ATGGTGGACGAGCAGACCTCCAAAGAGGATATCAACGGCCAGCAACTTAT
TGAGGCCACGCTGACTAAGCTCGACCTCGACGCTACGCCCTTTGAAGAAC
TCCAACTCGCTCGAGTCGTGACGAGAAAGCAACAGCAAATCACATTTGTC
AACTACAATTCTGATCAGGATGACTCCGACTCAGATGAAGAAGATGGCAG
ATTAATTACCACAAGAGAGTATCACGACAACGGCCAGCCTCGTTTGTTCA
AGACGTTTCAACGTCTCAATGACCACTCCGGAATGCCCTACAGGCGAATT
GTGGAGGAAAAGCATTTCGATATTGGGGGTGTTTGTCGAGTCGATGTTCA
CTTCGCCGTCGGTCAACCCTATCTTTACCGAAAGCACTACTGGCATAATC
AACAGCTGAAGTCCGAGTCCGTGTTCATGGTGGATGATGAAGTGACCATG
AGCTGTAAGAAATGGGGCCACTGGCGAACATACTACGAATCCGGTAACAT
TAAGACAGAGCTGCAATATCGAGATGGTGTTCGTTATGGATTTTGCAAAC
GATATGCTCCAGACGGAGCCGTGGAATGGGTGAAGGATTATACCAAGCAA
TACTTGGACCGCATTGAGAACTTTAACGAGAAGAAAGGAAAAGTGTCCTT
TTCCATCATGGACGCGTGTGACGTTCTTGGTTTCGAATCCCTGCCGGGCT
CTATGAAGGAAGTTAGTTCTCAGTATCGCACAAAATGTGCCCTTTTCCAC
CCCGATAAAACCCCGGACCCCAATGCTGCCGAAGAGTTCACCAAAATCAG
CCGAGCCCGTGACGTTCTAAAGGATTATTTTGAGAACCATAGTCATCCTC
CCCAGTGA