Gchil8123.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil8123.t1
Unique NameGchil8123.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length248
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004384_piloncontigtig00004384_pilon:41611..42559 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog31234.CRE14671
Preferred nameken
PFAMsBTB,Lin-8,zf-C2H2
Max annot lvl33154|Opisthokonta
GOsGO:0000003,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003700,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006355,GO:0007275,GO:0007444,GO:0007487,GO:0007548,GO:0008150,GO:0009888,GO:0009889,GO:0009966,GO:0009968,GO:0010468,GO:0010556,GO:0010646,GO:0010648,GO:0019219,GO:0019222,GO:0022414,GO:0023051,GO:0023057,GO:0030539,GO:0030540,GO:0031323,GO:0031326,GO:0032501,GO:0032502,GO:0035215,GO:0035295,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464,GO:0045496,GO:0045497,GO:0046425,GO:0046426,GO:0046660,GO:0046661,GO:0048513,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0048608,GO:0048731,GO:0048806,GO:0048856,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0060429,GO:0061458,GO:0065007,GO:0080090,GO:0097159,GO:0140110,GO:1901363,GO:1902531,GO:1902532,GO:1903506,GO:1904892,GO:1904893,GO:2000112,GO:2001141
Evalue4.25e-09
EggNOG OGsKOG1721@1|root,KOG1721@2759|Eukaryota,39AYS@33154|Opisthokonta
DescriptionTranscription factor required for terminalia development. Negative regulator of the JAK STAT pathway represses JAK STAT-dependent expression of ventral veins lacking (vvl) in the posterior spiracles
COG categoryK
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8123Gchil8123Gracilaria chilensis NLEC103_M9 malegenetig00004384_pilon 41611..42559 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8123.t1Gchil8123.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004384_pilon 41611..42559 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8123.t1.stop1Gchil8123.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004384_pilon 41611..41613 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8123.t1.CDS1Gchil8123.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004384_pilon 41611..42120 -
Gchil8123.t1.CDS2Gchil8123.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004384_pilon 42227..42274 -
Gchil8123.t1.CDS3Gchil8123.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004384_pilon 42374..42559 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8123.t1.exon1Gchil8123.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004384_pilon 41611..42120 -
Gchil8123.t1.exon2Gchil8123.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004384_pilon 42227..42274 -
Gchil8123.t1.exon3Gchil8123.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004384_pilon 42374..42559 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8123.t1.intron1Gchil8123.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004384_pilon 42121..42226 -
Gchil8123.t1.intron2Gchil8123.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004384_pilon 42275..42373 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8123.t1.start1Gchil8123.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004384_pilon 42557..42559 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil8123.t1 ID=Gchil8123.t1|Name=Gchil8123.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=248bp
MSQSQGTDTTTGFNREFGLVIGNSSRHTFSSGTKAKKPRPRPVCKVCGKS
FSKPANLKAHERIHTGEKRYMCLICDRRFVWKSSLNFHSRTAHKDRRNQT
PISHAKSQTPSTAPMEFVQSDDLRPESDKDEPFSKSLGQHTCDYGDMALQ
LQALATNEPCVSDLLNNNEVTDESHGQVGSWEQSSIAPLGTWGDEPLLQD
IGLRGCFDGFDVLPSWVPGVETDNCFLASDAEKLLFDDHNRNLFSEF*
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spliced messenger RNA

>Gchil8123.t1 ID=Gchil8123.t1|Name=Gchil8123.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=744bp|location=Sequence derived from alignment at tig00004384_pilon:41611..42559- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTCAATCACAAGGGACCGACACAACAACGGGTTTTAATCGAGAGTT
CGGCCTGGTAATTGGGAATTCATCACGCCATACATTCTCTTCCGGTACGA
AGGCGAAAAAACCTCGCCCACGCCCGGTCTGCAAGGTCTGTGGAAAGTCG
TTTTCGAAGCCAGCAAATCTGAAGGCTCATGAAAGGATCCATACGGGAGA
AAAGAGGTATATGTGTCTCATCTGCGATCGGCGATTTGTTTGGAAGAGTA
GTCTTAACTTCCACAGCCGCACTGCTCACAAAGATCGAAGAAACCAGACG
CCTATCTCTCACGCCAAATCTCAAACACCATCCACAGCGCCTATGGAATT
TGTTCAAAGTGACGACTTGCGACCCGAATCGGATAAAGATGAACCTTTCT
CGAAATCATTGGGCCAACACACATGCGACTACGGGGACATGGCACTTCAG
CTCCAAGCTCTTGCCACAAATGAGCCATGTGTTTCTGATTTACTCAACAA
CAACGAGGTTACTGATGAATCTCATGGCCAAGTCGGTTCGTGGGAACAAA
GTTCGATTGCTCCGCTTGGAACATGGGGAGATGAACCTCTGCTGCAAGAC
ATAGGACTCCGTGGGTGTTTCGATGGCTTTGACGTTCTTCCGTCCTGGGT
ACCGGGAGTTGAAACTGACAATTGCTTTTTAGCGTCGGACGCAGAGAAGC
TACTGTTTGACGACCACAACCGCAACCTCTTTAGTGAATTCTAG
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protein sequence of Gchil8123.t1

>Gchil8123.t1 ID=Gchil8123.t1|Name=Gchil8123.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=248bp
MSQSQGTDTTTGFNREFGLVIGNSSRHTFSSGTKAKKPRPRPVCKVCGKS
FSKPANLKAHERIHTGEKRYMCLICDRRFVWKSSLNFHSRTAHKDRRNQT
PISHAKSQTPSTAPMEFVQSDDLRPESDKDEPFSKSLGQHTCDYGDMALQ
LQALATNEPCVSDLLNNNEVTDESHGQVGSWEQSSIAPLGTWGDEPLLQD
IGLRGCFDGFDVLPSWVPGVETDNCFLASDAEKLLFDDHNRNLFSEF*
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mRNA from alignment at tig00004384_pilon:41611..42559-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil8123.t1 ID=Gchil8123.t1|Name=Gchil8123.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=949bp|location=Sequence derived from alignment at tig00004384_pilon:41611..42559- (Gracilaria chilensis NLEC103_M9 male)
ATGAGTCAATCACAAGGGACCGACACAACAACGGGTTTTAATCGAGAGTT
CGGCCTGGTAATTGGGAATTCATCACGCCATACATTCTCTTCCGGTACGA
AGGCGAAAAAACCTCGCCCACGCCCGGTCTGCAAGGTCTGTGGAAAGTCG
TTTTCGAAGCCAGCAAATCTGAAGGCTCATGAAAGGGTCCGTTGTGTATT
TGTTTCTGATTGACTCTCTTATACCTCTCTCACGTCTACGATTTCTGACG
ATCATCTTCTCCGAACTATTTGGTTTTCAAAACAGATCCATACGGGAGAA
AAGAGGTATATGTGTCTCATCTGCGATCGGCGAGTAAGTCTTCGGCGGAT
TACTTTCGGTGCCAAAGAACTTGATAGCATTCTCACGAATTTCTAACATC
TTCGCTCGAATTGTATTTTCATGAACACTGTTTTCTCAGTTTGTTTGGAA
GAGTAGTCTTAACTTCCACAGCCGCACTGCTCACAAAGATCGAAGAAACC
AGACGCCTATCTCTCACGCCAAATCTCAAACACCATCCACAGCGCCTATG
GAATTTGTTCAAAGTGACGACTTGCGACCCGAATCGGATAAAGATGAACC
TTTCTCGAAATCATTGGGCCAACACACATGCGACTACGGGGACATGGCAC
TTCAGCTCCAAGCTCTTGCCACAAATGAGCCATGTGTTTCTGATTTACTC
AACAACAACGAGGTTACTGATGAATCTCATGGCCAAGTCGGTTCGTGGGA
ACAAAGTTCGATTGCTCCGCTTGGAACATGGGGAGATGAACCTCTGCTGC
AAGACATAGGACTCCGTGGGTGTTTCGATGGCTTTGACGTTCTTCCGTCC
TGGGTACCGGGAGTTGAAACTGACAATTGCTTTTTAGCGTCGGACGCAGA
GAAGCTACTGTTTGACGACCACAACCGCAACCTCTTTAGTGAATTCTAG
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Coding sequence (CDS) from alignment at tig00004384_pilon:41611..42559-

>Gchil8123.t1 ID=Gchil8123.t1|Name=Gchil8123.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=744bp|location=Sequence derived from alignment at tig00004384_pilon:41611..42559- (Gracilaria chilensis NLEC103_M9 male)
ATGAGTCAATCACAAGGGACCGACACAACAACGGGTTTTAATCGAGAGTT
CGGCCTGGTAATTGGGAATTCATCACGCCATACATTCTCTTCCGGTACGA
AGGCGAAAAAACCTCGCCCACGCCCGGTCTGCAAGGTCTGTGGAAAGTCG
TTTTCGAAGCCAGCAAATCTGAAGGCTCATGAAAGGATCCATACGGGAGA
AAAGAGGTATATGTGTCTCATCTGCGATCGGCGATTTGTTTGGAAGAGTA
GTCTTAACTTCCACAGCCGCACTGCTCACAAAGATCGAAGAAACCAGACG
CCTATCTCTCACGCCAAATCTCAAACACCATCCACAGCGCCTATGGAATT
TGTTCAAAGTGACGACTTGCGACCCGAATCGGATAAAGATGAACCTTTCT
CGAAATCATTGGGCCAACACACATGCGACTACGGGGACATGGCACTTCAG
CTCCAAGCTCTTGCCACAAATGAGCCATGTGTTTCTGATTTACTCAACAA
CAACGAGGTTACTGATGAATCTCATGGCCAAGTCGGTTCGTGGGAACAAA
GTTCGATTGCTCCGCTTGGAACATGGGGAGATGAACCTCTGCTGCAAGAC
ATAGGACTCCGTGGGTGTTTCGATGGCTTTGACGTTCTTCCGTCCTGGGT
ACCGGGAGTTGAAACTGACAATTGCTTTTTAGCGTCGGACGCAGAGAAGC
TACTGTTTGACGACCACAACCGCAACCTCTTTAGTGAATTCTAG
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