Gchil8121.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil8121.t1
Unique NameGchil8121.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length268
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004384_piloncontigtig00004384_pilon:37725..38690 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog88036.EFJ37824
PFAMsGlyoxalase
Max annot lvl35493|Streptophyta
KEGG rclassRC00004,RC00740
KEGG koko:K01759
KEGG ReactionR02530
KEGG Pathwayko00620,map00620
GOsGO:0003674,GO:0003824,GO:0004462,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006081,GO:0006082,GO:0006089,GO:0006950,GO:0008150,GO:0008152,GO:0009056,GO:0009266,GO:0009409,GO:0009438,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009579,GO:0009628,GO:0009987,GO:0010319,GO:0016829,GO:0016846,GO:0019243,GO:0019752,GO:0031967,GO:0031975,GO:0031977,GO:0032787,GO:0042180,GO:0042182,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044248,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0046185,GO:0050896,GO:0051596,GO:0061727,GO:0071704,GO:1901575,GO:1901615
Evalue5.91e-119
EggNOG OGsCOG0346@1|root,KOG2943@2759|Eukaryota,37MYF@33090|Viridiplantae,3GF0Z@35493|Streptophyta
EC4.4.1.5
DescriptionCatalyzes the conversion of hemimercaptal, formed from methylglyoxal and glutathione, to S-lactoylglutathione
COG categoryG
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8121Gchil8121Gracilaria chilensis NLEC103_M9 malegenetig00004384_pilon 37725..38690 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8121.t1Gchil8121.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004384_pilon 37725..38690 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8121.t1.start1Gchil8121.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004384_pilon 37725..37727 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8121.t1.CDS1Gchil8121.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004384_pilon 37725..38049 +
Gchil8121.t1.CDS2Gchil8121.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004384_pilon 38123..38249 +
Gchil8121.t1.CDS3Gchil8121.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004384_pilon 38339..38690 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8121.t1.exon1Gchil8121.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004384_pilon 37725..38049 +
Gchil8121.t1.exon2Gchil8121.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004384_pilon 38123..38249 +
Gchil8121.t1.exon3Gchil8121.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004384_pilon 38339..38690 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8121.t1.intron1Gchil8121.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004384_pilon 38050..38122 +
Gchil8121.t1.intron2Gchil8121.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004384_pilon 38250..38338 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8121.t1.stop1Gchil8121.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004384_pilon 38688..38690 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil8121.t1 ID=Gchil8121.t1|Name=Gchil8121.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=268bp
MAADKMLHAVYRVGDLDSSQKFLEALGMKCLRERDVPSENYTNVFYGYGS
ERKGEHFSLELTYNYGVDTYELGSGFGHFGVAVEDARATVERVREAGFKV
TREVGPVKGGTTVMAFVQDPTGYKFEVIQRKQRDPLCQVMLRVKDLDKSI
SFYEAMGMKLLRKRDNPEYKYTLGFMGFGPEEESTVLELTYNYGDNTYTP
GTGYAQIAVSTPDVYKAAEKMKKSGFTLAREPGPVSGIGTKICAVRDPDG
WKTVLVDAEDFEREFDE*
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spliced messenger RNA

>Gchil8121.t1 ID=Gchil8121.t1|Name=Gchil8121.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=804bp|location=Sequence derived from alignment at tig00004384_pilon:37725..38690+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTGCGGACAAAATGCTACATGCTGTTTATCGCGTTGGTGATTTGGA
CTCTTCGCAAAAATTCCTGGAAGCACTAGGAATGAAGTGTCTTCGAGAGC
GCGACGTGCCCAGTGAAAACTATACGAACGTATTCTACGGATATGGATCG
GAAAGGAAAGGAGAGCATTTTAGCTTAGAACTCACGTATAACTACGGAGT
TGATACATATGAACTTGGCAGTGGCTTTGGCCATTTTGGTGTCGCTGTAG
AAGATGCAAGGGCGACGGTTGAACGAGTGAGAGAGGCGGGCTTTAAGGTC
ACACGAGAAGTGGGCCCTGTCAAGGGAGGTACGACTGTAATGGCTTTCGT
TCAAGATCCTACGGGATATAAGTTTGAAGTCATACAACGCAAGCAACGAG
ACCCACTGTGCCAAGTGATGCTTAGGGTCAAGGATCTTGACAAATCTATT
TCCTTTTACGAAGCCATGGGTATGAAGCTTCTTCGTAAGCGCGACAACCC
GGAATACAAGTATACGCTGGGCTTCATGGGTTTTGGTCCCGAAGAAGAGA
GTACGGTGTTAGAATTGACTTACAACTACGGGGACAATACTTATACCCCT
GGTACTGGATATGCGCAGATTGCAGTTAGCACACCCGATGTGTACAAAGC
TGCCGAAAAAATGAAAAAGAGTGGTTTTACTCTGGCTCGTGAACCAGGGC
CTGTTTCGGGGATTGGAACCAAGATCTGTGCTGTGAGGGATCCTGACGGA
TGGAAGACAGTTCTCGTAGATGCCGAAGATTTCGAGCGAGAATTTGACGA
ATGA
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protein sequence of Gchil8121.t1

>Gchil8121.t1 ID=Gchil8121.t1|Name=Gchil8121.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=268bp
MAADKMLHAVYRVGDLDSSQKFLEALGMKCLRERDVPSENYTNVFYGYGS
ERKGEHFSLELTYNYGVDTYELGSGFGHFGVAVEDARATVERVREAGFKV
TREVGPVKGGTTVMAFVQDPTGYKFEVIQRKQRDPLCQVMLRVKDLDKSI
SFYEAMGMKLLRKRDNPEYKYTLGFMGFGPEEESTVLELTYNYGDNTYTP
GTGYAQIAVSTPDVYKAAEKMKKSGFTLAREPGPVSGIGTKICAVRDPDG
WKTVLVDAEDFEREFDE*
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mRNA from alignment at tig00004384_pilon:37725..38690+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil8121.t1 ID=Gchil8121.t1|Name=Gchil8121.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=966bp|location=Sequence derived from alignment at tig00004384_pilon:37725..38690+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCTGCGGACAAAATGCTACATGCTGTTTATCGCGTTGGTGATTTGGA
CTCTTCGCAAAAATTCCTGGAAGCACTAGGAATGAAGTGTCTTCGAGAGC
GCGACGTGCCCAGTGAAAACTATACGAACGTATTCTACGGATATGGATCG
GAAAGGAAAGGAGAGCATTTTAGCTTAGAACTCACGTATAACTACGGAGT
TGATACATATGAACTTGGCAGTGGCTTTGGCCATTTTGGTGTCGCTGTAG
AAGATGCAAGGGCGACGGTTGAACGAGTGAGAGAGGCGGGCTTTAAGGTC
ACACGAGAAGTGGGCCCTGTCAAGGGTAAGTGAAATCAACTTGATCTTTG
AAGAGTTCTCTTTCTGACAAATTGTTCAACTCTATTATCGTGGAAAAGGA
GGTACGACTGTAATGGCTTTCGTTCAAGATCCTACGGGATATAAGTTTGA
AGTCATACAACGCAAGCAACGAGACCCACTGTGCCAAGTGATGCTTAGGG
TCAAGGATCTTGACAAATCTATTTCGTAAGTATTGGATACCGCCATGCAT
TGTGCAACGACGAATTTTGATGTATATTGGAATGTCTAACCGCCCAACCG
TTATTAAACTACAGCTTTTACGAAGCCATGGGTATGAAGCTTCTTCGTAA
GCGCGACAACCCGGAATACAAGTATACGCTGGGCTTCATGGGTTTTGGTC
CCGAAGAAGAGAGTACGGTGTTAGAATTGACTTACAACTACGGGGACAAT
ACTTATACCCCTGGTACTGGATATGCGCAGATTGCAGTTAGCACACCCGA
TGTGTACAAAGCTGCCGAAAAAATGAAAAAGAGTGGTTTTACTCTGGCTC
GTGAACCAGGGCCTGTTTCGGGGATTGGAACCAAGATCTGTGCTGTGAGG
GATCCTGACGGATGGAAGACAGTTCTCGTAGATGCCGAAGATTTCGAGCG
AGAATTTGACGAATGA
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Coding sequence (CDS) from alignment at tig00004384_pilon:37725..38690+

>Gchil8121.t1 ID=Gchil8121.t1|Name=Gchil8121.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=804bp|location=Sequence derived from alignment at tig00004384_pilon:37725..38690+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCTGCGGACAAAATGCTACATGCTGTTTATCGCGTTGGTGATTTGGA
CTCTTCGCAAAAATTCCTGGAAGCACTAGGAATGAAGTGTCTTCGAGAGC
GCGACGTGCCCAGTGAAAACTATACGAACGTATTCTACGGATATGGATCG
GAAAGGAAAGGAGAGCATTTTAGCTTAGAACTCACGTATAACTACGGAGT
TGATACATATGAACTTGGCAGTGGCTTTGGCCATTTTGGTGTCGCTGTAG
AAGATGCAAGGGCGACGGTTGAACGAGTGAGAGAGGCGGGCTTTAAGGTC
ACACGAGAAGTGGGCCCTGTCAAGGGAGGTACGACTGTAATGGCTTTCGT
TCAAGATCCTACGGGATATAAGTTTGAAGTCATACAACGCAAGCAACGAG
ACCCACTGTGCCAAGTGATGCTTAGGGTCAAGGATCTTGACAAATCTATT
TCCTTTTACGAAGCCATGGGTATGAAGCTTCTTCGTAAGCGCGACAACCC
GGAATACAAGTATACGCTGGGCTTCATGGGTTTTGGTCCCGAAGAAGAGA
GTACGGTGTTAGAATTGACTTACAACTACGGGGACAATACTTATACCCCT
GGTACTGGATATGCGCAGATTGCAGTTAGCACACCCGATGTGTACAAAGC
TGCCGAAAAAATGAAAAAGAGTGGTTTTACTCTGGCTCGTGAACCAGGGC
CTGTTTCGGGGATTGGAACCAAGATCTGTGCTGTGAGGGATCCTGACGGA
TGGAAGACAGTTCTCGTAGATGCCGAAGATTTCGAGCGAGAATTTGACGA
ATGA
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