Gchil8078.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil8078.t1
Unique Name	Gchil8078.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	635

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004435_pilon	contig	tig00004435_pilon:1235736..1237640 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	46681.XP_001738252.1
PFAMs	AIG1
Max annot lvl	554915\|Amoebozoa
Evalue	0.000189
EggNOG OGs	2CSZG@1\|root,2RDZC@2759\|Eukaryota,3XCW1@554915\|Amoebozoa
Description	AIG1 family
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil8078	Gchil8078	Gracilaria chilensis NLEC103_M9 male	gene	tig00004435_pilon 1235736..1237640 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8078.t1.start1	Gchil8078.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004435_pilon 1235736..1235738 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8078.t1.CDS1	Gchil8078.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004435_pilon 1235736..1237640 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8078.t1.exon1	Gchil8078.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004435_pilon 1235736..1237640 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8078.t1.stop1	Gchil8078.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004435_pilon 1237638..1237640 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8078.t1	Gchil8078.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004435_pilon 1235736..1237640 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004435_pilon:1235736..1237640+
coding sequence from alignment at tig00004435_pilon:1235736..1237640+

mRNA sequence

>Gchil8078.t1 ID=Gchil8078.t1|Name=Gchil8078.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=635bp
MEVAGIIDVVGFLAEFISVVQFFEGPEETINAAYGLLQDTHEDIESLKER
INRQSDTIKSMITTGVIIEVRSRLKATHIPSANLELLIKLLLAIKDFASN
VVFALVVKYPGFRVNATLGVAGMSSDRIEDLVENFDGMYVSLQEVREVKT
CFVNVRIRGKYERRVENFCSAALSAIATEVFGFPAQVSPQNEMEFPIAPA
GNQTFVLLRPEVSDDSVEVEFDQNRRKFIVGNTRSGKSTVGNALLEKGLF
EVLKGMTGTMQLKAGHRTDVVNHESWRTDLYDIPGLNDKDGLDVWYEAAI
EDHIKILQQISSLVMTVNVDGGISRATFVSLDMYKKLFGEDMASMLILVL
TVNEPASEYELEATKNNNWPTIRRLDHRIRKEHVFCVSLHDLRQQHDCPS
RTIVELIRTMCRAMPMSLITSLATRYKEIRDALKQREGNVEAEVQTLVDD
GWQAYDNLTESFERQEYVKLTDDESGLFDGFVMKCTSEDDQLLAFITLGL
VNNIRKTAIHVQHEGIMADTIWSDFLSENRWNRKNCTLMRRFGDHVSANG
MAVLVRDAGVSYKGTLHVQSYFVSMFNPVSYSHEQLASYLTEILKGNEDE
MAPEVVDSLRKMAIPRRIVAKLRGRREATKKSKK*

spliced messenger RNA

>Gchil8078.t1 ID=Gchil8078.t1|Name=Gchil8078.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1905bp|location=Sequence derived from alignment at tig00004435_pilon:1235736..1237640+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAGTGGCTGGTATCATAGACGTTGTCGGATTCCTCGCAGAATTCAT
CTCGGTTGTCCAGTTCTTTGAGGGTCCGGAAGAGACAATAAATGCTGCTT
ATGGCCTTCTACAGGACACCCATGAAGACATTGAGTCCTTGAAGGAAAGA
ATAAATCGTCAGAGCGATACCATAAAGAGCATGATAACCACAGGCGTGAT
AATCGAGGTTCGTTCGCGCCTGAAAGCAACCCATATTCCGTCAGCAAATC
TAGAACTTCTTATTAAGCTTTTATTGGCTATCAAGGACTTCGCATCGAAT
GTCGTCTTCGCATTGGTGGTCAAATATCCAGGTTTCAGGGTCAACGCTAC
CCTTGGAGTGGCGGGAATGTCATCAGATCGTATTGAAGACCTTGTGGAGA
ACTTTGATGGAATGTACGTAAGTCTTCAAGAAGTCCGAGAAGTCAAAACG
TGTTTCGTGAATGTAAGGATTCGTGGAAAGTACGAACGCAGAGTTGAAAA
CTTTTGCTCCGCCGCTCTTTCAGCCATTGCCACTGAAGTCTTCGGTTTTC
CCGCGCAAGTTTCTCCCCAAAATGAGATGGAATTTCCAATTGCACCAGCA
GGAAATCAAACGTTTGTTCTCCTTCGCCCCGAAGTAAGTGATGACAGTGT
GGAGGTCGAATTTGACCAGAATCGACGAAAATTTATTGTGGGAAATACCA
GGTCTGGAAAGTCAACAGTTGGGAATGCTCTTCTGGAAAAGGGGTTGTTT
GAAGTCTTGAAGGGAATGACGGGCACCATGCAATTGAAAGCGGGACATAG
AACTGATGTGGTGAATCATGAAAGCTGGCGCACGGATTTATACGACATAC
CTGGTTTGAATGACAAGGATGGACTAGATGTATGGTACGAAGCGGCAATA
GAGGACCACATCAAGATTCTACAACAAATAAGCTCATTGGTAATGACTGT
GAACGTAGATGGAGGCATTTCAAGAGCCACTTTCGTGTCACTAGACATGT
ACAAGAAGCTGTTTGGGGAGGACATGGCTTCTATGCTTATTCTCGTTCTA
ACCGTGAATGAGCCTGCTAGTGAGTATGAGCTCGAAGCGACGAAGAACAA
CAACTGGCCAACTATCCGTAGGCTCGATCATCGCATAAGAAAGGAGCATG
TGTTTTGCGTAAGCCTTCACGATTTAAGGCAGCAACATGACTGCCCTTCT
CGTACAATTGTGGAACTAATTAGAACTATGTGTAGGGCGATGCCGATGAG
CCTCATCACATCTCTTGCAACAAGATACAAGGAGATAAGGGACGCATTGA
AACAGAGAGAGGGCAATGTAGAAGCTGAGGTGCAGACGCTTGTGGATGAC
GGCTGGCAAGCATATGACAATCTTACAGAAAGCTTCGAGAGACAGGAATA
CGTCAAACTCACGGATGACGAAAGTGGACTGTTCGACGGTTTTGTGATGA
AGTGTACCAGTGAGGATGATCAGCTGCTTGCTTTCATTACACTTGGATTG
GTGAACAATATACGCAAAACTGCGATTCATGTACAGCATGAGGGAATTAT
GGCTGATACGATTTGGAGTGATTTTCTCTCGGAGAATCGGTGGAATAGGA
AGAACTGTACATTGATGCGTAGGTTTGGAGATCATGTTTCTGCGAACGGA
ATGGCGGTGCTTGTTAGAGATGCTGGGGTATCATACAAGGGAACACTCCA
TGTGCAGAGTTACTTCGTTAGCATGTTCAACCCAGTCAGCTATTCTCATG
AACAACTAGCCTCGTACCTCACtgaaatattgaaaggaaatgaagatgaa
atgGCACCAGAAGTTGTGGACAGTTTGAGGAAAATGGCTATTCCGAGGCG
CATTGTTGCCAAACTGCGCGGCAGGCGGGAGGCAACAAAGAAAAGCAAGA
AATGA

protein sequence of Gchil8078.t1

>Gchil8078.t1 ID=Gchil8078.t1|Name=Gchil8078.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=635bp
MEVAGIIDVVGFLAEFISVVQFFEGPEETINAAYGLLQDTHEDIESLKER
INRQSDTIKSMITTGVIIEVRSRLKATHIPSANLELLIKLLLAIKDFASN
VVFALVVKYPGFRVNATLGVAGMSSDRIEDLVENFDGMYVSLQEVREVKT
CFVNVRIRGKYERRVENFCSAALSAIATEVFGFPAQVSPQNEMEFPIAPA
GNQTFVLLRPEVSDDSVEVEFDQNRRKFIVGNTRSGKSTVGNALLEKGLF
EVLKGMTGTMQLKAGHRTDVVNHESWRTDLYDIPGLNDKDGLDVWYEAAI
EDHIKILQQISSLVMTVNVDGGISRATFVSLDMYKKLFGEDMASMLILVL
TVNEPASEYELEATKNNNWPTIRRLDHRIRKEHVFCVSLHDLRQQHDCPS
RTIVELIRTMCRAMPMSLITSLATRYKEIRDALKQREGNVEAEVQTLVDD
GWQAYDNLTESFERQEYVKLTDDESGLFDGFVMKCTSEDDQLLAFITLGL
VNNIRKTAIHVQHEGIMADTIWSDFLSENRWNRKNCTLMRRFGDHVSANG
MAVLVRDAGVSYKGTLHVQSYFVSMFNPVSYSHEQLASYLTEILKGNEDE
MAPEVVDSLRKMAIPRRIVAKLRGRREATKKSKK*

mRNA from alignment at tig00004435_pilon:1235736..1237640+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil8078.t1 ID=Gchil8078.t1|Name=Gchil8078.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1905bp|location=Sequence derived from alignment at tig00004435_pilon:1235736..1237640+ (Gracilaria chilensis NLEC103_M9 male)
ATGGAAGTGGCTGGTATCATAGACGTTGTCGGATTCCTCGCAGAATTCAT
CTCGGTTGTCCAGTTCTTTGAGGGTCCGGAAGAGACAATAAATGCTGCTT
ATGGCCTTCTACAGGACACCCATGAAGACATTGAGTCCTTGAAGGAAAGA
ATAAATCGTCAGAGCGATACCATAAAGAGCATGATAACCACAGGCGTGAT
AATCGAGGTTCGTTCGCGCCTGAAAGCAACCCATATTCCGTCAGCAAATC
TAGAACTTCTTATTAAGCTTTTATTGGCTATCAAGGACTTCGCATCGAAT
GTCGTCTTCGCATTGGTGGTCAAATATCCAGGTTTCAGGGTCAACGCTAC
CCTTGGAGTGGCGGGAATGTCATCAGATCGTATTGAAGACCTTGTGGAGA
ACTTTGATGGAATGTACGTAAGTCTTCAAGAAGTCCGAGAAGTCAAAACG
TGTTTCGTGAATGTAAGGATTCGTGGAAAGTACGAACGCAGAGTTGAAAA
CTTTTGCTCCGCCGCTCTTTCAGCCATTGCCACTGAAGTCTTCGGTTTTC
CCGCGCAAGTTTCTCCCCAAAATGAGATGGAATTTCCAATTGCACCAGCA
GGAAATCAAACGTTTGTTCTCCTTCGCCCCGAAGTAAGTGATGACAGTGT
GGAGGTCGAATTTGACCAGAATCGACGAAAATTTATTGTGGGAAATACCA
GGTCTGGAAAGTCAACAGTTGGGAATGCTCTTCTGGAAAAGGGGTTGTTT
GAAGTCTTGAAGGGAATGACGGGCACCATGCAATTGAAAGCGGGACATAG
AACTGATGTGGTGAATCATGAAAGCTGGCGCACGGATTTATACGACATAC
CTGGTTTGAATGACAAGGATGGACTAGATGTATGGTACGAAGCGGCAATA
GAGGACCACATCAAGATTCTACAACAAATAAGCTCATTGGTAATGACTGT
GAACGTAGATGGAGGCATTTCAAGAGCCACTTTCGTGTCACTAGACATGT
ACAAGAAGCTGTTTGGGGAGGACATGGCTTCTATGCTTATTCTCGTTCTA
ACCGTGAATGAGCCTGCTAGTGAGTATGAGCTCGAAGCGACGAAGAACAA
CAACTGGCCAACTATCCGTAGGCTCGATCATCGCATAAGAAAGGAGCATG
TGTTTTGCGTAAGCCTTCACGATTTAAGGCAGCAACATGACTGCCCTTCT
CGTACAATTGTGGAACTAATTAGAACTATGTGTAGGGCGATGCCGATGAG
CCTCATCACATCTCTTGCAACAAGATACAAGGAGATAAGGGACGCATTGA
AACAGAGAGAGGGCAATGTAGAAGCTGAGGTGCAGACGCTTGTGGATGAC
GGCTGGCAAGCATATGACAATCTTACAGAAAGCTTCGAGAGACAGGAATA
CGTCAAACTCACGGATGACGAAAGTGGACTGTTCGACGGTTTTGTGATGA
AGTGTACCAGTGAGGATGATCAGCTGCTTGCTTTCATTACACTTGGATTG
GTGAACAATATACGCAAAACTGCGATTCATGTACAGCATGAGGGAATTAT
GGCTGATACGATTTGGAGTGATTTTCTCTCGGAGAATCGGTGGAATAGGA
AGAACTGTACATTGATGCGTAGGTTTGGAGATCATGTTTCTGCGAACGGA
ATGGCGGTGCTTGTTAGAGATGCTGGGGTATCATACAAGGGAACACTCCA
TGTGCAGAGTTACTTCGTTAGCATGTTCAACCCAGTCAGCTATTCTCATG
AACAACTAGCCTCGTACCTCACtgaaatattgaaaggaaatgaagatgaa
atgGCACCAGAAGTTGTGGACAGTTTGAGGAAAATGGCTATTCCGAGGCG
CATTGTTGCCAAACTGCGCGGCAGGCGGGAGGCAACAAAGAAAAGCAAGA
AATGA

Coding sequence (CDS) from alignment at tig00004435_pilon:1235736..1237640+

>Gchil8078.t1 ID=Gchil8078.t1|Name=Gchil8078.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1905bp|location=Sequence derived from alignment at tig00004435_pilon:1235736..1237640+ (Gracilaria chilensis NLEC103_M9 male)
ATGGAAGTGGCTGGTATCATAGACGTTGTCGGATTCCTCGCAGAATTCAT
CTCGGTTGTCCAGTTCTTTGAGGGTCCGGAAGAGACAATAAATGCTGCTT
ATGGCCTTCTACAGGACACCCATGAAGACATTGAGTCCTTGAAGGAAAGA
ATAAATCGTCAGAGCGATACCATAAAGAGCATGATAACCACAGGCGTGAT
AATCGAGGTTCGTTCGCGCCTGAAAGCAACCCATATTCCGTCAGCAAATC
TAGAACTTCTTATTAAGCTTTTATTGGCTATCAAGGACTTCGCATCGAAT
GTCGTCTTCGCATTGGTGGTCAAATATCCAGGTTTCAGGGTCAACGCTAC
CCTTGGAGTGGCGGGAATGTCATCAGATCGTATTGAAGACCTTGTGGAGA
ACTTTGATGGAATGTACGTAAGTCTTCAAGAAGTCCGAGAAGTCAAAACG
TGTTTCGTGAATGTAAGGATTCGTGGAAAGTACGAACGCAGAGTTGAAAA
CTTTTGCTCCGCCGCTCTTTCAGCCATTGCCACTGAAGTCTTCGGTTTTC
CCGCGCAAGTTTCTCCCCAAAATGAGATGGAATTTCCAATTGCACCAGCA
GGAAATCAAACGTTTGTTCTCCTTCGCCCCGAAGTAAGTGATGACAGTGT
GGAGGTCGAATTTGACCAGAATCGACGAAAATTTATTGTGGGAAATACCA
GGTCTGGAAAGTCAACAGTTGGGAATGCTCTTCTGGAAAAGGGGTTGTTT
GAAGTCTTGAAGGGAATGACGGGCACCATGCAATTGAAAGCGGGACATAG
AACTGATGTGGTGAATCATGAAAGCTGGCGCACGGATTTATACGACATAC
CTGGTTTGAATGACAAGGATGGACTAGATGTATGGTACGAAGCGGCAATA
GAGGACCACATCAAGATTCTACAACAAATAAGCTCATTGGTAATGACTGT
GAACGTAGATGGAGGCATTTCAAGAGCCACTTTCGTGTCACTAGACATGT
ACAAGAAGCTGTTTGGGGAGGACATGGCTTCTATGCTTATTCTCGTTCTA
ACCGTGAATGAGCCTGCTAGTGAGTATGAGCTCGAAGCGACGAAGAACAA
CAACTGGCCAACTATCCGTAGGCTCGATCATCGCATAAGAAAGGAGCATG
TGTTTTGCGTAAGCCTTCACGATTTAAGGCAGCAACATGACTGCCCTTCT
CGTACAATTGTGGAACTAATTAGAACTATGTGTAGGGCGATGCCGATGAG
CCTCATCACATCTCTTGCAACAAGATACAAGGAGATAAGGGACGCATTGA
AACAGAGAGAGGGCAATGTAGAAGCTGAGGTGCAGACGCTTGTGGATGAC
GGCTGGCAAGCATATGACAATCTTACAGAAAGCTTCGAGAGACAGGAATA
CGTCAAACTCACGGATGACGAAAGTGGACTGTTCGACGGTTTTGTGATGA
AGTGTACCAGTGAGGATGATCAGCTGCTTGCTTTCATTACACTTGGATTG
GTGAACAATATACGCAAAACTGCGATTCATGTACAGCATGAGGGAATTAT
GGCTGATACGATTTGGAGTGATTTTCTCTCGGAGAATCGGTGGAATAGGA
AGAACTGTACATTGATGCGTAGGTTTGGAGATCATGTTTCTGCGAACGGA
ATGGCGGTGCTTGTTAGAGATGCTGGGGTATCATACAAGGGAACACTCCA
TGTGCAGAGTTACTTCGTTAGCATGTTCAACCCAGTCAGCTATTCTCATG
AACAACTAGCCTCGTACCTCACtgaaatattgaaaggaaatgaagatgaa
atgGCACCAGAAGTTGTGGACAGTTTGAGGAAAATGGCTATTCCGAGGCG
CATTGTTGCCAAACTGCGCGGCAGGCGGGAGGCAACAAAGAAAAGCAAGA
AATGA