Gchil8077.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil8077.t1
Unique NameGchil8077.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length302
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004435_piloncontigtig00004435_pilon:1174458..1176138 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8077Gchil8077Gracilaria chilensis NLEC103_M9 malegenetig00004435_pilon 1174458..1176138 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8077.t1Gchil8077.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004435_pilon 1174458..1176138 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8077.t1.start1Gchil8077.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004435_pilon 1174458..1174460 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8077.t1.CDS1Gchil8077.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004435_pilon 1174458..1175064 +
Gchil8077.t1.CDS2Gchil8077.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004435_pilon 1175840..1176138 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8077.t1.exon1Gchil8077.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004435_pilon 1174458..1175064 +
Gchil8077.t1.exon2Gchil8077.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004435_pilon 1175840..1176138 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8077.t1.intron1Gchil8077.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004435_pilon 1175065..1175839 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8077.t1.stop1Gchil8077.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004435_pilon 1176136..1176138 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil8077.t1 ID=Gchil8077.t1|Name=Gchil8077.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=302bp
MGEYSLLSSSSTMKPNALFIAGTALLLSFSTAITSEFDHTEPCIRVDSAT
GVAETFETSSESTILLERCAKTDNLTTIFRAGTIGLDTLWIECGERELIS
VKGEGRVEALLGDKPVVCDAGGCVAYNIFNRTVDLSAFLLEERVESIRMS
NRSIPFLRTTMLSEFERSGDEFAMLMLSAFMRNINDPFRLRVLLFLESTT
SNYLLLRSALKPSSRKLNKTLKDHFENLIKDHHKAPENNITVFKIIEVLE
CKMMPLHDIMLVANKYNKVRRTERHEKTDLDKYLTKTRQQIRERALSGSK
I*
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spliced messenger RNA

>Gchil8077.t1 ID=Gchil8077.t1|Name=Gchil8077.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=906bp|location=Sequence derived from alignment at tig00004435_pilon:1174458..1176138+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCGAGTACTCTCTTCTTTCATCATCGTCCACCATGAAGCCCAACGC
CTTGTTCATCGCTGGGACAGCACTGTTGTTATCTTTTTCTACAGCTATTA
CCTCAGAGTTTGATCACACTGAGCCATGCATTCGTGTTGATAGCGCCACC
GGTGTTGCAGAAACCTTCGAAACATCGAGCGAGTCAACCATTCTTCTGGA
AAGGTGCGCCAAAACCGACAACCTCACCACCATCTTCAGAGCCGGAACTA
TCGGGCTGGATACACTATGGATTGAGTGTGGAGAGCGAGAGCTAATATCT
GTGAAAGGCGAAGGAAGGGTTGAGGCTCTCCTCGGCGATAAGCCTGTGGT
TTGCGATGCGGGTGGATGCGTGGCGTACAACATATTTAACCGTACAGTGG
ATCTTTCCGCATTCCTCCTAGAAGAGCGGGTGGAGAGTATTCGCATGTCA
AATAGATCGATTCCATTCTTGAGGACTACTATGCTGAGTGAATTTGAGCG
ATCTGGTGATGAGTTTGCAATGTTGATGTTGTCGGCATTTATGCGTAATA
TAAACGATCCGTTTAGGCTGCGTGTGCTCTTGTTTCTTGAAAGCACAACA
AGCAACTATCTACTACTGCGTTCTGCCTTAAAGCCGTCGTCGAGAAAACT
TAACAAAACTCTCAAAGATCACTTTGAAAACTTAATCAAAGACCACCACA
AAGCCCCCGAGAATAATATTACTGTCTTTAAAATTATTGAAGTTCTTGAG
TGTAAAATGATGCCGCTGCATGATATAATGCTTGTTGCGAATAAATACAA
CAAGGTGCGAAGAACAGAGCGGCACGAGAAGACAGATTTGGATAAGTACT
TGACCAAAACTAGGCAACAGATACGCGAACGCGCCTTATCGGGATCGAAA
ATTTAA
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protein sequence of Gchil8077.t1

>Gchil8077.t1 ID=Gchil8077.t1|Name=Gchil8077.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=302bp
MGEYSLLSSSSTMKPNALFIAGTALLLSFSTAITSEFDHTEPCIRVDSAT
GVAETFETSSESTILLERCAKTDNLTTIFRAGTIGLDTLWIECGERELIS
VKGEGRVEALLGDKPVVCDAGGCVAYNIFNRTVDLSAFLLEERVESIRMS
NRSIPFLRTTMLSEFERSGDEFAMLMLSAFMRNINDPFRLRVLLFLESTT
SNYLLLRSALKPSSRKLNKTLKDHFENLIKDHHKAPENNITVFKIIEVLE
CKMMPLHDIMLVANKYNKVRRTERHEKTDLDKYLTKTRQQIRERALSGSK
I*
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mRNA from alignment at tig00004435_pilon:1174458..1176138+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil8077.t1 ID=Gchil8077.t1|Name=Gchil8077.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1681bp|location=Sequence derived from alignment at tig00004435_pilon:1174458..1176138+ (Gracilaria chilensis NLEC103_M9 male)
ATGGGCGAGTACTCTCTTCTTTCATCATCGTCCACCATGAAGCCCAACGC
CTTGTTCATCGCTGGGACAGCACTGTTGTTATCTTTTTCTACAGCTATTA
CCTCAGAGTTTGATCACACTGAGCCATGCATTCGTGTTGATAGCGCCACC
GGTGTTGCAGAAACCTTCGAAACATCGAGCGAGTCAACCATTCTTCTGGA
AAGGTGCGCCAAAACCGACAACCTCACCACCATCTTCAGAGCCGGAACTA
TCGGGCTGGATACACTATGGATTGAGTGTGGAGAGCGAGAGCTAATATCT
GTGAAAGGCGAAGGAAGGGTTGAGGCTCTCCTCGGCGATAAGCCTGTGGT
TTGCGATGCGGGTGGATGCGTGGCGTACAACATATTTAACCGTACAGTGG
ATCTTTCCGCATTCCTCCTAGAAGAGCGGGTGGAGAGTATTCGCATGTCA
AATAGATCGATTCCATTCTTGAGGACTACTATGCTGAGTGAATTTGAGCG
ATCTGGTGATGAGTTTGCAATGTTGATGTTGTCGGCATTTATGCGTAATA
TAAACGATCCGTTTAGGCTGCGTGTGCTCTTGTTTCTTGAAAGCACAACA
AGCAACTGTACGTCCTCCGGCTTCTGCAATCGTTGCAGCATGATGTGCTG
ATACTCTGTCATTATGATGGGTTCAGAGTTTTATGCAGAGGGGTGGCAGA
GGTTTTCATCGTGATTGAGAGCATGGTCGCATGGTGAGCATGTAGACTCT
GGGGCGAGCGGTTCTGGTGAGGTTTAAATGCGTTGCGCCGAAAGCAGGTT
TCGGCTTGAGTCTGGGCACACGACTGCGGAGGGCGTTGAAGAAGAACAAA
GTACAGCTGAGAGCTGCTCGGGGGCTCTGTTCGTATAATCGCGTAGTGCT
GGGGGGGCTGTTGAATGGCAATTAGAGAGCTTACGAAAAAAAAAAAGACA
TCGCTTCGCCGCCAAATTACGTTACACGTAGTAAATTGCAAAAAACACTC
ACTAGGGCACCCCTCCATAAAAAAATATTTTGAAGGGTAGCGCTCCCGCC
GCGCTCCCGCCGCGCTCCCGCCAACTTCCGTCCCCGAAACATGGCGGGAA
TTCAAGACTCGTAGCTGCCAACATCCCCGATCGCGCCGCCTACCGCGCAT
TCAGCAACAAATATGCCCTCCTTCGAGCCTTCTTCGACCCCGTAGCACAA
ATTAGGCCCCTCGTCGGAATCACCCCATTACCGCCAGAACAAAACGAAAC
AAAGAGCCAATTGAGCTTCCAATACTCTTTTAACGTTCTTTTTCTCAAAT
TCGTGAGGGCCATTGATTTTCATCTATCACCACTCGGTAAAACGAGGTTC
TGTCTCAAAATAGCGCTTTCTATGTTCAAAAGATCTACTACTGCGTTCTG
CCTTAAAGCCGTCGTCGAGAAAACTTAACAAAACTCTCAAAGATCACTTT
GAAAACTTAATCAAAGACCACCACAAAGCCCCCGAGAATAATATTACTGT
CTTTAAAATTATTGAAGTTCTTGAGTGTAAAATGATGCCGCTGCATGATA
TAATGCTTGTTGCGAATAAATACAACAAGGTGCGAAGAACAGAGCGGCAC
GAGAAGACAGATTTGGATAAGTACTTGACCAAAACTAGGCAACAGATACG
CGAACGCGCCTTATCGGGATCGAAAATTTAA
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Coding sequence (CDS) from alignment at tig00004435_pilon:1174458..1176138+

>Gchil8077.t1 ID=Gchil8077.t1|Name=Gchil8077.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=906bp|location=Sequence derived from alignment at tig00004435_pilon:1174458..1176138+ (Gracilaria chilensis NLEC103_M9 male)
ATGGGCGAGTACTCTCTTCTTTCATCATCGTCCACCATGAAGCCCAACGC
CTTGTTCATCGCTGGGACAGCACTGTTGTTATCTTTTTCTACAGCTATTA
CCTCAGAGTTTGATCACACTGAGCCATGCATTCGTGTTGATAGCGCCACC
GGTGTTGCAGAAACCTTCGAAACATCGAGCGAGTCAACCATTCTTCTGGA
AAGGTGCGCCAAAACCGACAACCTCACCACCATCTTCAGAGCCGGAACTA
TCGGGCTGGATACACTATGGATTGAGTGTGGAGAGCGAGAGCTAATATCT
GTGAAAGGCGAAGGAAGGGTTGAGGCTCTCCTCGGCGATAAGCCTGTGGT
TTGCGATGCGGGTGGATGCGTGGCGTACAACATATTTAACCGTACAGTGG
ATCTTTCCGCATTCCTCCTAGAAGAGCGGGTGGAGAGTATTCGCATGTCA
AATAGATCGATTCCATTCTTGAGGACTACTATGCTGAGTGAATTTGAGCG
ATCTGGTGATGAGTTTGCAATGTTGATGTTGTCGGCATTTATGCGTAATA
TAAACGATCCGTTTAGGCTGCGTGTGCTCTTGTTTCTTGAAAGCACAACA
AGCAACTATCTACTACTGCGTTCTGCCTTAAAGCCGTCGTCGAGAAAACT
TAACAAAACTCTCAAAGATCACTTTGAAAACTTAATCAAAGACCACCACA
AAGCCCCCGAGAATAATATTACTGTCTTTAAAATTATTGAAGTTCTTGAG
TGTAAAATGATGCCGCTGCATGATATAATGCTTGTTGCGAATAAATACAA
CAAGGTGCGAAGAACAGAGCGGCACGAGAAGACAGATTTGGATAAGTACT
TGACCAAAACTAGGCAACAGATACGCGAACGCGCCTTATCGGGATCGAAA
ATTTAA
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