Gchil8076.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil8076.t1
Unique NameGchil8076.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length279
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004435_piloncontigtig00004435_pilon:1170688..1171524 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8076Gchil8076Gracilaria chilensis NLEC103_M9 malegenetig00004435_pilon 1170688..1171524 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8076.t1.start1Gchil8076.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004435_pilon 1170688..1170690 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8076.t1.CDS1Gchil8076.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004435_pilon 1170688..1171524 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8076.t1.exon1Gchil8076.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004435_pilon 1170688..1171524 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8076.t1.stop1Gchil8076.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004435_pilon 1171522..1171524 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8076.t1Gchil8076.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004435_pilon 1170688..1171524 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil8076.t1 ID=Gchil8076.t1|Name=Gchil8076.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=279bp
MSPEKMVRTRHVLTNSCGSNGNIDVVHTHGHFGDGDGGGTRTDGDGEEDC
AVELLGMTENDVGGDEDGEGEGELEMLSRREEDGVGNVFKKSEGENEGEG
DSTTIDDLDGETFGDDPMATDGEAIEKDEMLGDDSWLAEGEELNANVVLA
EADGDEEADNKADGEREGVIEGDGDWEDVIEGDGDWEDVIEGDGVGLSSI
QFPDRSCATASPAESALIDFLLLYISKGTARQALWKDGESILNSAIFCRL
VSRAVYPYPPAAEGSIELPSGQSFQVAI*
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spliced messenger RNA

>Gchil8076.t1 ID=Gchil8076.t1|Name=Gchil8076.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=837bp|location=Sequence derived from alignment at tig00004435_pilon:1170688..1171524+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGCCGGAAAAAATGGTCCGCACGCGACATGTCCTCACAAATTCTTG
CGGTTCAAATGGAAACATAGATGTTGTACATACACACGGGCATTTCGGTG
ATGGGGACGGAGGAGGAACTAGAACAGATGGAGATGGAGAAGAGGACTGT
GCAGTTGAACTGCTCGGCATGACGGAAAACGATGTTGGTGGAGATGAAGA
TGGCGAGGGCGAGGGCGAGTTAGAGATGCTTAGCCGAAGAGAGGAAGATG
GGGTTGGAAATGTATTCAAGAAGTCTGAAGGTGAGAACGAAGGAGAAGGT
GACAGTACTACCATCGATGACTTAGACGGGGAGACGTTTGGAGATGATCC
AATGGCAACAGATGGTGAGGCTATTGAAAAAGATGAAATGCTTGGCGATG
ATTCGTGGCTTGCAGAAGGTGAAGAACTGAATGCAAACGTGGTGCTCGCA
GAAGCTGATGGTGATGAAGAAGCTGACAACAAAGCAGATGGTGAGAGAGA
AGGTGTTATTGAAGGAGACGGTGATTGGGAAGATGTTATCGAAGGAGACG
GCGATTGGGAAGATGTTATCGAAGGAGATGGTGTAGGGCTCTCGAGCATA
CAGTTTCCGGATAGAAGCTGTGCCACAGCATCACCCGCGGAATCGGCACT
CATTGATTTTCTTCTGTTGTATATCTCGAAAGGAACAGCAAGACAGGCGC
TCTGGAAGGACGGAGAAAGCATCTTGAACTCTGCAATCTTCTGTCGATTG
GTCTCGAGGGCTGTGTATCCATACCCCCCAGCCGCAGAGGGCTCAATCGA
GCTCCCCTCCGGCCAATCATTCCAGGTGGCGATTTGA
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protein sequence of Gchil8076.t1

>Gchil8076.t1 ID=Gchil8076.t1|Name=Gchil8076.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=279bp
MSPEKMVRTRHVLTNSCGSNGNIDVVHTHGHFGDGDGGGTRTDGDGEEDC
AVELLGMTENDVGGDEDGEGEGELEMLSRREEDGVGNVFKKSEGENEGEG
DSTTIDDLDGETFGDDPMATDGEAIEKDEMLGDDSWLAEGEELNANVVLA
EADGDEEADNKADGEREGVIEGDGDWEDVIEGDGDWEDVIEGDGVGLSSI
QFPDRSCATASPAESALIDFLLLYISKGTARQALWKDGESILNSAIFCRL
VSRAVYPYPPAAEGSIELPSGQSFQVAI*
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mRNA from alignment at tig00004435_pilon:1170688..1171524+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil8076.t1 ID=Gchil8076.t1|Name=Gchil8076.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=837bp|location=Sequence derived from alignment at tig00004435_pilon:1170688..1171524+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCGCCGGAAAAAATGGTCCGCACGCGACATGTCCTCACAAATTCTTG
CGGTTCAAATGGAAACATAGATGTTGTACATACACACGGGCATTTCGGTG
ATGGGGACGGAGGAGGAACTAGAACAGATGGAGATGGAGAAGAGGACTGT
GCAGTTGAACTGCTCGGCATGACGGAAAACGATGTTGGTGGAGATGAAGA
TGGCGAGGGCGAGGGCGAGTTAGAGATGCTTAGCCGAAGAGAGGAAGATG
GGGTTGGAAATGTATTCAAGAAGTCTGAAGGTGAGAACGAAGGAGAAGGT
GACAGTACTACCATCGATGACTTAGACGGGGAGACGTTTGGAGATGATCC
AATGGCAACAGATGGTGAGGCTATTGAAAAAGATGAAATGCTTGGCGATG
ATTCGTGGCTTGCAGAAGGTGAAGAACTGAATGCAAACGTGGTGCTCGCA
GAAGCTGATGGTGATGAAGAAGCTGACAACAAAGCAGATGGTGAGAGAGA
AGGTGTTATTGAAGGAGACGGTGATTGGGAAGATGTTATCGAAGGAGACG
GCGATTGGGAAGATGTTATCGAAGGAGATGGTGTAGGGCTCTCGAGCATA
CAGTTTCCGGATAGAAGCTGTGCCACAGCATCACCCGCGGAATCGGCACT
CATTGATTTTCTTCTGTTGTATATCTCGAAAGGAACAGCAAGACAGGCGC
TCTGGAAGGACGGAGAAAGCATCTTGAACTCTGCAATCTTCTGTCGATTG
GTCTCGAGGGCTGTGTATCCATACCCCCCAGCCGCAGAGGGCTCAATCGA
GCTCCCCTCCGGCCAATCATTCCAGGTGGCGATTTGA
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Coding sequence (CDS) from alignment at tig00004435_pilon:1170688..1171524+

>Gchil8076.t1 ID=Gchil8076.t1|Name=Gchil8076.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=837bp|location=Sequence derived from alignment at tig00004435_pilon:1170688..1171524+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCGCCGGAAAAAATGGTCCGCACGCGACATGTCCTCACAAATTCTTG
CGGTTCAAATGGAAACATAGATGTTGTACATACACACGGGCATTTCGGTG
ATGGGGACGGAGGAGGAACTAGAACAGATGGAGATGGAGAAGAGGACTGT
GCAGTTGAACTGCTCGGCATGACGGAAAACGATGTTGGTGGAGATGAAGA
TGGCGAGGGCGAGGGCGAGTTAGAGATGCTTAGCCGAAGAGAGGAAGATG
GGGTTGGAAATGTATTCAAGAAGTCTGAAGGTGAGAACGAAGGAGAAGGT
GACAGTACTACCATCGATGACTTAGACGGGGAGACGTTTGGAGATGATCC
AATGGCAACAGATGGTGAGGCTATTGAAAAAGATGAAATGCTTGGCGATG
ATTCGTGGCTTGCAGAAGGTGAAGAACTGAATGCAAACGTGGTGCTCGCA
GAAGCTGATGGTGATGAAGAAGCTGACAACAAAGCAGATGGTGAGAGAGA
AGGTGTTATTGAAGGAGACGGTGATTGGGAAGATGTTATCGAAGGAGACG
GCGATTGGGAAGATGTTATCGAAGGAGATGGTGTAGGGCTCTCGAGCATA
CAGTTTCCGGATAGAAGCTGTGCCACAGCATCACCCGCGGAATCGGCACT
CATTGATTTTCTTCTGTTGTATATCTCGAAAGGAACAGCAAGACAGGCGC
TCTGGAAGGACGGAGAAAGCATCTTGAACTCTGCAATCTTCTGTCGATTG
GTCTCGAGGGCTGTGTATCCATACCCCCCAGCCGCAGAGGGCTCAATCGA
GCTCCCCTCCGGCCAATCATTCCAGGTGGCGATTTGA
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