Gchil8075.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil8075.t1
Unique NameGchil8075.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length431
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004435_piloncontigtig00004435_pilon:1146987..1148279 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8075Gchil8075Gracilaria chilensis NLEC103_M9 malegenetig00004435_pilon 1146987..1148279 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8075.t1.stop1Gchil8075.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004435_pilon 1146987..1146989 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8075.t1.CDS1Gchil8075.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004435_pilon 1146987..1148279 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8075.t1.exon1Gchil8075.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004435_pilon 1146987..1148279 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8075.t1.start1Gchil8075.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004435_pilon 1148277..1148279 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8075.t1Gchil8075.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004435_pilon 1146987..1148279 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil8075.t1 ID=Gchil8075.t1|Name=Gchil8075.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=431bp
MIYWSLKRSQGFQNHILPFESVTLSDIALRFPGRPAFVRDLKRFLGIVVE
EYGEWHREQRFLSEKNTSHVQTLPLLIFRGRSNRGLGDRFRGLLRAYLLA
VVTERFFLIDLPEMGSMSKMLGNPLKNNFIYDPAVFSNERSEETIRGSKK
SNYNLRKYLNSSRVIIETGQRGPQLRRFLSITTRYPQLPFALKIKKADLE
SFEVGESVVVPFLLQLLFETAPSLRRSLKEKDPFRGEAYLASHARLGHGV
REGEKKRFNVEKEGLDLRSLSICFGRVVGMAAKHSAMNRIFLATDTANAT
KWIKEGVRVELPNAIVGTLKGQVAHVNSLRTEGGEDRMYEVFERAFVDLG
LMARGKGLVALNSGFSRLAAWMGAHDDRNTIMFDTKFCRLLRFGAGMGGQ
NGECFKTVHMRTLVEKKSIGRWKYACNLTK*
back to top

spliced messenger RNA

>Gchil8075.t1 ID=Gchil8075.t1|Name=Gchil8075.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1293bp|location=Sequence derived from alignment at tig00004435_pilon:1146987..1148279- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATCTATTGGAGTCTGAAACGATCCCAAGGTTTTCAAAACCACATTCT
TCCCTTCGAATCCGTCACCCTCAGCGACATTGCCCTTCGTTTTCCTGGCC
GTCCAGCCTTTGTTCGAGATTTGAAGAGATTTCTGGGGATTGTGGTCGAA
GAATATGGAGAGTGGCACAGAGAACAGCGGTTTCTGAGTGAAAAGAACAC
GTCTCATGTGCAGACCCTACCATTGCTGATCTTCCGCGGGCGCTCAAATC
GTGGCCTTGGTGATCGCTTTCGTGGTCTGCTTCGCGCCTATCTTCTGGCA
GTTGTAACAGAGCGCTTCTTTTTAATCGACCTGCCGGAAATGGGTTCAAT
GTCGAAAATGCTAGGGAATCCTTTAAAGAACAATTTCATTTATGATCCCG
CTGTCTTCTCAAATGAACGAAGTGAAGAAACTATTCGTGGTAGTAAGAAA
TCAAACTACAACCTTCGCAAGTATCTGAACTCTTCTCGCGTCATTATTGA
GACTGGCCAACGAGGTCCGCAATTGAGACGCTTTCTTTCCATCACAACCC
GATATCCACAACTGCCTTTCGCACTGAAAATAAAGAAGGCGGACCTGGAA
TCATTCGAAGTTGGGGAAAGCGTAGTGGTTCCTTTCTTACTGCAGTTGCT
TTTCGAGACCGCTCCATCATTGCGAAGAAGCCTAAAAGAAAAAGATCCTT
TCCGAGGCGAGGCATACCTAGCCTCGCACGCCAGGTTGGGACACGGCGTC
AGGGAAGGGGAAAAAAAACGCTTTAATGTGGAGAAGGAGGGATTAGATTT
GCGCAGTTTGTCGATTTGTTTTGGTCGTGTTGTGGGCATGGCCGCTAAGC
ATTCCGCGATGAATAGAATTTTTCTTGCAACAGATACGGCAAACGCCACA
AAGTGGATCAAAGAGGGAGTGCGTGTAGAACTGCCAAATGCAATCGTGGG
AACCCTTAAAGGTCAAGTAGCGCATGTGAACAGTCTGCGAACCGAGGGCG
GAGAAGACAGGATGTATGAAGTGTTTGAAAGAGCTTTTGTGGATCTGGGG
CTCATGGCAAGAGGAAAAGGGTTGGTTGCCCTGAACTCAGGGTTTTCTCG
GCTGGCAGCGTGGATGGGTGCACATGATGATCGAAACACAATCATGTTTG
ACACCAAATTTTGCAGATTGCTCCGGTTTGGTGCAGGGATGGGTGGCCAA
AACGGCGAATGCTTTAAAACAGTGCATATGCGAACCCTCGTCGAAAAAAA
AAGCATAGGTCGATGGAAATATGCGTGCAACTTGACCAAATGA
back to top

protein sequence of Gchil8075.t1

>Gchil8075.t1 ID=Gchil8075.t1|Name=Gchil8075.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=431bp
MIYWSLKRSQGFQNHILPFESVTLSDIALRFPGRPAFVRDLKRFLGIVVE
EYGEWHREQRFLSEKNTSHVQTLPLLIFRGRSNRGLGDRFRGLLRAYLLA
VVTERFFLIDLPEMGSMSKMLGNPLKNNFIYDPAVFSNERSEETIRGSKK
SNYNLRKYLNSSRVIIETGQRGPQLRRFLSITTRYPQLPFALKIKKADLE
SFEVGESVVVPFLLQLLFETAPSLRRSLKEKDPFRGEAYLASHARLGHGV
REGEKKRFNVEKEGLDLRSLSICFGRVVGMAAKHSAMNRIFLATDTANAT
KWIKEGVRVELPNAIVGTLKGQVAHVNSLRTEGGEDRMYEVFERAFVDLG
LMARGKGLVALNSGFSRLAAWMGAHDDRNTIMFDTKFCRLLRFGAGMGGQ
NGECFKTVHMRTLVEKKSIGRWKYACNLTK*
back to top

mRNA from alignment at tig00004435_pilon:1146987..1148279-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil8075.t1 ID=Gchil8075.t1|Name=Gchil8075.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1293bp|location=Sequence derived from alignment at tig00004435_pilon:1146987..1148279- (Gracilaria chilensis NLEC103_M9 male)
ATGATCTATTGGAGTCTGAAACGATCCCAAGGTTTTCAAAACCACATTCT
TCCCTTCGAATCCGTCACCCTCAGCGACATTGCCCTTCGTTTTCCTGGCC
GTCCAGCCTTTGTTCGAGATTTGAAGAGATTTCTGGGGATTGTGGTCGAA
GAATATGGAGAGTGGCACAGAGAACAGCGGTTTCTGAGTGAAAAGAACAC
GTCTCATGTGCAGACCCTACCATTGCTGATCTTCCGCGGGCGCTCAAATC
GTGGCCTTGGTGATCGCTTTCGTGGTCTGCTTCGCGCCTATCTTCTGGCA
GTTGTAACAGAGCGCTTCTTTTTAATCGACCTGCCGGAAATGGGTTCAAT
GTCGAAAATGCTAGGGAATCCTTTAAAGAACAATTTCATTTATGATCCCG
CTGTCTTCTCAAATGAACGAAGTGAAGAAACTATTCGTGGTAGTAAGAAA
TCAAACTACAACCTTCGCAAGTATCTGAACTCTTCTCGCGTCATTATTGA
GACTGGCCAACGAGGTCCGCAATTGAGACGCTTTCTTTCCATCACAACCC
GATATCCACAACTGCCTTTCGCACTGAAAATAAAGAAGGCGGACCTGGAA
TCATTCGAAGTTGGGGAAAGCGTAGTGGTTCCTTTCTTACTGCAGTTGCT
TTTCGAGACCGCTCCATCATTGCGAAGAAGCCTAAAAGAAAAAGATCCTT
TCCGAGGCGAGGCATACCTAGCCTCGCACGCCAGGTTGGGACACGGCGTC
AGGGAAGGGGAAAAAAAACGCTTTAATGTGGAGAAGGAGGGATTAGATTT
GCGCAGTTTGTCGATTTGTTTTGGTCGTGTTGTGGGCATGGCCGCTAAGC
ATTCCGCGATGAATAGAATTTTTCTTGCAACAGATACGGCAAACGCCACA
AAGTGGATCAAAGAGGGAGTGCGTGTAGAACTGCCAAATGCAATCGTGGG
AACCCTTAAAGGTCAAGTAGCGCATGTGAACAGTCTGCGAACCGAGGGCG
GAGAAGACAGGATGTATGAAGTGTTTGAAAGAGCTTTTGTGGATCTGGGG
CTCATGGCAAGAGGAAAAGGGTTGGTTGCCCTGAACTCAGGGTTTTCTCG
GCTGGCAGCGTGGATGGGTGCACATGATGATCGAAACACAATCATGTTTG
ACACCAAATTTTGCAGATTGCTCCGGTTTGGTGCAGGGATGGGTGGCCAA
AACGGCGAATGCTTTAAAACAGTGCATATGCGAACCCTCGTCGAAAAAAA
AAGCATAGGTCGATGGAAATATGCGTGCAACTTGACCAAATGA
back to top

Coding sequence (CDS) from alignment at tig00004435_pilon:1146987..1148279-

>Gchil8075.t1 ID=Gchil8075.t1|Name=Gchil8075.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1293bp|location=Sequence derived from alignment at tig00004435_pilon:1146987..1148279- (Gracilaria chilensis NLEC103_M9 male)
ATGATCTATTGGAGTCTGAAACGATCCCAAGGTTTTCAAAACCACATTCT
TCCCTTCGAATCCGTCACCCTCAGCGACATTGCCCTTCGTTTTCCTGGCC
GTCCAGCCTTTGTTCGAGATTTGAAGAGATTTCTGGGGATTGTGGTCGAA
GAATATGGAGAGTGGCACAGAGAACAGCGGTTTCTGAGTGAAAAGAACAC
GTCTCATGTGCAGACCCTACCATTGCTGATCTTCCGCGGGCGCTCAAATC
GTGGCCTTGGTGATCGCTTTCGTGGTCTGCTTCGCGCCTATCTTCTGGCA
GTTGTAACAGAGCGCTTCTTTTTAATCGACCTGCCGGAAATGGGTTCAAT
GTCGAAAATGCTAGGGAATCCTTTAAAGAACAATTTCATTTATGATCCCG
CTGTCTTCTCAAATGAACGAAGTGAAGAAACTATTCGTGGTAGTAAGAAA
TCAAACTACAACCTTCGCAAGTATCTGAACTCTTCTCGCGTCATTATTGA
GACTGGCCAACGAGGTCCGCAATTGAGACGCTTTCTTTCCATCACAACCC
GATATCCACAACTGCCTTTCGCACTGAAAATAAAGAAGGCGGACCTGGAA
TCATTCGAAGTTGGGGAAAGCGTAGTGGTTCCTTTCTTACTGCAGTTGCT
TTTCGAGACCGCTCCATCATTGCGAAGAAGCCTAAAAGAAAAAGATCCTT
TCCGAGGCGAGGCATACCTAGCCTCGCACGCCAGGTTGGGACACGGCGTC
AGGGAAGGGGAAAAAAAACGCTTTAATGTGGAGAAGGAGGGATTAGATTT
GCGCAGTTTGTCGATTTGTTTTGGTCGTGTTGTGGGCATGGCCGCTAAGC
ATTCCGCGATGAATAGAATTTTTCTTGCAACAGATACGGCAAACGCCACA
AAGTGGATCAAAGAGGGAGTGCGTGTAGAACTGCCAAATGCAATCGTGGG
AACCCTTAAAGGTCAAGTAGCGCATGTGAACAGTCTGCGAACCGAGGGCG
GAGAAGACAGGATGTATGAAGTGTTTGAAAGAGCTTTTGTGGATCTGGGG
CTCATGGCAAGAGGAAAAGGGTTGGTTGCCCTGAACTCAGGGTTTTCTCG
GCTGGCAGCGTGGATGGGTGCACATGATGATCGAAACACAATCATGTTTG
ACACCAAATTTTGCAGATTGCTCCGGTTTGGTGCAGGGATGGGTGGCCAA
AACGGCGAATGCTTTAAAACAGTGCATATGCGAACCCTCGTCGAAAAAAA
AAGCATAGGTCGATGGAAATATGCGTGCAACTTGACCAAATGA
back to top