Gchil8067.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil8067.t1
Unique NameGchil8067.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length407
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004435_piloncontigtig00004435_pilon:936463..937683 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8067Gchil8067Gracilaria chilensis NLEC103_M9 malegenetig00004435_pilon 936463..937683 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8067.t1.stop1Gchil8067.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004435_pilon 936463..936465 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8067.t1.CDS1Gchil8067.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004435_pilon 936463..937683 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8067.t1.exon1Gchil8067.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004435_pilon 936463..937683 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8067.t1.start1Gchil8067.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004435_pilon 937681..937683 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8067.t1Gchil8067.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004435_pilon 936463..937683 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil8067.t1 ID=Gchil8067.t1|Name=Gchil8067.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=407bp
MASRFSDSPAFGIKLKRFLDIVVADYNGWHRKQRNLCDTNRSHARSLRLL
VFRGSNVNYGLGDHFRGLLHSYLKAVASGRFFLIDMPKALPLYKMLRNPV
LSNFTYDATVFSSEPEEESVVRGDSKFQDLGMYLKSSRVVFETSLTRLYV
KHFLRIPEYYPHLPFSQQLKKGGLDKFEIEHSVVAPFLLQALFETSPSLL
RTIREKDAFPGQPFLASHARLGQGLGETQSRFNFTKEGQTIRSVSTCFGR
IVGLVAKHIGLNNVLVATDTQMALKWIAEGVRTEHARALVATIEGPVVHT
STLRGSEGTNESYEAYERAFVDLGLMARAQGLVALNSGFSRLAAWMGAHN
DRNTIMFEPQVCPLLGIGARARCEEHRRFKEMRVRTLAEEKVISRWKVQC
KNEATK*
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spliced messenger RNA

>Gchil8067.t1 ID=Gchil8067.t1|Name=Gchil8067.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1221bp|location=Sequence derived from alignment at tig00004435_pilon:936463..937683- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTTCAAGATTTTCTGACTCTCCTGCCTTTGGTATCAAGCTGAAGCG
ATTTTTGGACATTGTCGTGGCAGACTACAACGGCTGGCACAGGAAGCAAA
GGAACCTGTGCGACACGAACCGATCCCATGCACGATCGCTGCGGCTGCTG
GTGTTTCGAGGAAGTAACGTGAACTATGGTCTCGGTGATCACTTTCGAGG
CCTGCTCCATAGCTACCTCAAGGCGGTTGCCTCCGGACGGTTCTTCCTGA
TCGATATGCCAAAAGCGCTTCCGCTATACAAAATGCTGAGAAACCCAGTT
CTCAGCAACTTTACGTACGACGCGACTGTGTTCTCCTCGGAACCGGAAGA
AGAAAGTGTGGTTAGAGGCGATAGCAAGTTTCAGGACCTCGGCATGTATC
TGAAATCGTCGCGCGTTGTTTTCGAGACAAGTCTGACAAGACTGTACGTG
AAGCACTTTTTGAGAATCCCTGAGTATTATCCACATCTGCCTTTCTCACA
GCAATTGAAGAAGGGCGGTCTGGACAAATTCGAAATCGAGCACAGCGTCG
TGGCGCCCTTTTTACTCCAGGCTCTGTTTGAGACCTCCCCGTCGCTGCTA
AGAACGATAAGGGAGAAGGATGCATTTCCGGGGCAGCCTTTTCTCGCATC
GCACGCGCGACTTGGACAAGGGTTGGGGGAAACACAGTCGCGCTTCAATT
TTACGAAGGAGGGACAGACCATTCGTAGCGTGTCGACCTGCTTCGGTCGT
ATAGTAGGGCTAGTGGCCAAGCATATAGGGCTGAACAACGTGTTAGTGGC
GACAGATACGCAAATGGCGCTCAAGTGGATCGCAGAAGGGGTACGCACGG
AGCACGCAAGAGCATTGGTTGCAACGATCGAGGGCCCTGTAGTGCACACG
TCCACGCTGCGCGGGAGCGAGGGAACAAATGAGAGCTACGAAGCGTATGA
AAGAGCGTTTGTGGACTTGGGGCTGATGGCGAGGGCGCAGGGTTTGGTAG
CGTTGAACTCGGGCTTTTCGCGGCTGGCTGCGTGGATGGGCGCGCATAAC
GACAGGAACACGATAATGTTTGAGCCACAGGTGTGCCCGCTGCTCGGAAT
TGGCGCCAGGGCGCGCTGCGAAGAGCATCGGCGCTTCAAAGAGATGAGGG
TTCGCACGCTGGCTGAAGAGAAGGTAATCAGTCGATGGAAAGTTCAGTGC
AAGAATGAGGCCACCAAATAA
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protein sequence of Gchil8067.t1

>Gchil8067.t1 ID=Gchil8067.t1|Name=Gchil8067.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=407bp
MASRFSDSPAFGIKLKRFLDIVVADYNGWHRKQRNLCDTNRSHARSLRLL
VFRGSNVNYGLGDHFRGLLHSYLKAVASGRFFLIDMPKALPLYKMLRNPV
LSNFTYDATVFSSEPEEESVVRGDSKFQDLGMYLKSSRVVFETSLTRLYV
KHFLRIPEYYPHLPFSQQLKKGGLDKFEIEHSVVAPFLLQALFETSPSLL
RTIREKDAFPGQPFLASHARLGQGLGETQSRFNFTKEGQTIRSVSTCFGR
IVGLVAKHIGLNNVLVATDTQMALKWIAEGVRTEHARALVATIEGPVVHT
STLRGSEGTNESYEAYERAFVDLGLMARAQGLVALNSGFSRLAAWMGAHN
DRNTIMFEPQVCPLLGIGARARCEEHRRFKEMRVRTLAEEKVISRWKVQC
KNEATK*
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mRNA from alignment at tig00004435_pilon:936463..937683-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil8067.t1 ID=Gchil8067.t1|Name=Gchil8067.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1221bp|location=Sequence derived from alignment at tig00004435_pilon:936463..937683- (Gracilaria chilensis NLEC103_M9 male)
ATGGCTTCAAGATTTTCTGACTCTCCTGCCTTTGGTATCAAGCTGAAGCG
ATTTTTGGACATTGTCGTGGCAGACTACAACGGCTGGCACAGGAAGCAAA
GGAACCTGTGCGACACGAACCGATCCCATGCACGATCGCTGCGGCTGCTG
GTGTTTCGAGGAAGTAACGTGAACTATGGTCTCGGTGATCACTTTCGAGG
CCTGCTCCATAGCTACCTCAAGGCGGTTGCCTCCGGACGGTTCTTCCTGA
TCGATATGCCAAAAGCGCTTCCGCTATACAAAATGCTGAGAAACCCAGTT
CTCAGCAACTTTACGTACGACGCGACTGTGTTCTCCTCGGAACCGGAAGA
AGAAAGTGTGGTTAGAGGCGATAGCAAGTTTCAGGACCTCGGCATGTATC
TGAAATCGTCGCGCGTTGTTTTCGAGACAAGTCTGACAAGACTGTACGTG
AAGCACTTTTTGAGAATCCCTGAGTATTATCCACATCTGCCTTTCTCACA
GCAATTGAAGAAGGGCGGTCTGGACAAATTCGAAATCGAGCACAGCGTCG
TGGCGCCCTTTTTACTCCAGGCTCTGTTTGAGACCTCCCCGTCGCTGCTA
AGAACGATAAGGGAGAAGGATGCATTTCCGGGGCAGCCTTTTCTCGCATC
GCACGCGCGACTTGGACAAGGGTTGGGGGAAACACAGTCGCGCTTCAATT
TTACGAAGGAGGGACAGACCATTCGTAGCGTGTCGACCTGCTTCGGTCGT
ATAGTAGGGCTAGTGGCCAAGCATATAGGGCTGAACAACGTGTTAGTGGC
GACAGATACGCAAATGGCGCTCAAGTGGATCGCAGAAGGGGTACGCACGG
AGCACGCAAGAGCATTGGTTGCAACGATCGAGGGCCCTGTAGTGCACACG
TCCACGCTGCGCGGGAGCGAGGGAACAAATGAGAGCTACGAAGCGTATGA
AAGAGCGTTTGTGGACTTGGGGCTGATGGCGAGGGCGCAGGGTTTGGTAG
CGTTGAACTCGGGCTTTTCGCGGCTGGCTGCGTGGATGGGCGCGCATAAC
GACAGGAACACGATAATGTTTGAGCCACAGGTGTGCCCGCTGCTCGGAAT
TGGCGCCAGGGCGCGCTGCGAAGAGCATCGGCGCTTCAAAGAGATGAGGG
TTCGCACGCTGGCTGAAGAGAAGGTAATCAGTCGATGGAAAGTTCAGTGC
AAGAATGAGGCCACCAAATAA
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Coding sequence (CDS) from alignment at tig00004435_pilon:936463..937683-

>Gchil8067.t1 ID=Gchil8067.t1|Name=Gchil8067.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1221bp|location=Sequence derived from alignment at tig00004435_pilon:936463..937683- (Gracilaria chilensis NLEC103_M9 male)
ATGGCTTCAAGATTTTCTGACTCTCCTGCCTTTGGTATCAAGCTGAAGCG
ATTTTTGGACATTGTCGTGGCAGACTACAACGGCTGGCACAGGAAGCAAA
GGAACCTGTGCGACACGAACCGATCCCATGCACGATCGCTGCGGCTGCTG
GTGTTTCGAGGAAGTAACGTGAACTATGGTCTCGGTGATCACTTTCGAGG
CCTGCTCCATAGCTACCTCAAGGCGGTTGCCTCCGGACGGTTCTTCCTGA
TCGATATGCCAAAAGCGCTTCCGCTATACAAAATGCTGAGAAACCCAGTT
CTCAGCAACTTTACGTACGACGCGACTGTGTTCTCCTCGGAACCGGAAGA
AGAAAGTGTGGTTAGAGGCGATAGCAAGTTTCAGGACCTCGGCATGTATC
TGAAATCGTCGCGCGTTGTTTTCGAGACAAGTCTGACAAGACTGTACGTG
AAGCACTTTTTGAGAATCCCTGAGTATTATCCACATCTGCCTTTCTCACA
GCAATTGAAGAAGGGCGGTCTGGACAAATTCGAAATCGAGCACAGCGTCG
TGGCGCCCTTTTTACTCCAGGCTCTGTTTGAGACCTCCCCGTCGCTGCTA
AGAACGATAAGGGAGAAGGATGCATTTCCGGGGCAGCCTTTTCTCGCATC
GCACGCGCGACTTGGACAAGGGTTGGGGGAAACACAGTCGCGCTTCAATT
TTACGAAGGAGGGACAGACCATTCGTAGCGTGTCGACCTGCTTCGGTCGT
ATAGTAGGGCTAGTGGCCAAGCATATAGGGCTGAACAACGTGTTAGTGGC
GACAGATACGCAAATGGCGCTCAAGTGGATCGCAGAAGGGGTACGCACGG
AGCACGCAAGAGCATTGGTTGCAACGATCGAGGGCCCTGTAGTGCACACG
TCCACGCTGCGCGGGAGCGAGGGAACAAATGAGAGCTACGAAGCGTATGA
AAGAGCGTTTGTGGACTTGGGGCTGATGGCGAGGGCGCAGGGTTTGGTAG
CGTTGAACTCGGGCTTTTCGCGGCTGGCTGCGTGGATGGGCGCGCATAAC
GACAGGAACACGATAATGTTTGAGCCACAGGTGTGCCCGCTGCTCGGAAT
TGGCGCCAGGGCGCGCTGCGAAGAGCATCGGCGCTTCAAAGAGATGAGGG
TTCGCACGCTGGCTGAAGAGAAGGTAATCAGTCGATGGAAAGTTCAGTGC
AAGAATGAGGCCACCAAATAA
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