Gchil8054.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil8054.t1
Unique NameGchil8054.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length178
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004435_piloncontigtig00004435_pilon:316026..316559 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8054Gchil8054Gracilaria chilensis NLEC103_M9 malegenetig00004435_pilon 316026..316559 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8054.t1.stop1Gchil8054.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004435_pilon 316026..316028 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8054.t1.CDS1Gchil8054.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004435_pilon 316026..316559 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8054.t1.exon1Gchil8054.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004435_pilon 316026..316559 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8054.t1.start1Gchil8054.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004435_pilon 316557..316559 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8054.t1Gchil8054.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004435_pilon 316026..316559 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil8054.t1 ID=Gchil8054.t1|Name=Gchil8054.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=178bp
MNRLLPNRSENDTNEQSLDETGIPDHMNAEVVHETHPIACNEESSSASDL
ERFEVDYDPSAASFDAKEEIEFRFAQQKASRRPKNRNKSGFRDCAHGGEH
KVMLGTRRRASVLKKHSKSILRPRVVPPTADSKSVDKHGDIEVASTSQND
SNHFNEIDCGPVLRDTLEASNRRQATV*
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spliced messenger RNA

>Gchil8054.t1 ID=Gchil8054.t1|Name=Gchil8054.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=534bp|location=Sequence derived from alignment at tig00004435_pilon:316026..316559- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATAGGTTGCTGCCTAATAGAAGTGAAAATGACACTAACGAACAAAG
CCTCGACGAGACCGGCATTCCCGACCACATGAATGCAGAAGTGGTACACG
AAACGCATCCTATCGCATGTAATGAGGAATCCTCTTCCGCTAGTGACCTT
GAACGTTTTGAAGTAGATTATGACCCATCTGCCGCATCCTTCGATGCAAA
AGAAGAAATTGAATTTCGTTTTGCACAACAGAAGGCTTCGAGAAGACCGA
AAAACAGGAATAAAAGCGGTTTTAGAGATTGTGCTCACGGTGGAGAACAT
AAGGTGATGTTGGGTACGAGGAGACGGGCCTCAGTCCTGAAGAAACATTC
AAAAAGTATACTACGGCCCAGGGTAGTACCGCCCACAGCTGATTCCAAAT
CAGTCGATAAACACGGTGACATCGAAGTTGCTTCTACCTCCCAAAATGAT
TCTAATCATTTCAATGAAATTGATTGCGGTCCTGTGCTTCGCGACACATT
AGAGGCTTCGAATCGCAGGCAGGCCACTGTCTGA
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protein sequence of Gchil8054.t1

>Gchil8054.t1 ID=Gchil8054.t1|Name=Gchil8054.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=178bp
MNRLLPNRSENDTNEQSLDETGIPDHMNAEVVHETHPIACNEESSSASDL
ERFEVDYDPSAASFDAKEEIEFRFAQQKASRRPKNRNKSGFRDCAHGGEH
KVMLGTRRRASVLKKHSKSILRPRVVPPTADSKSVDKHGDIEVASTSQND
SNHFNEIDCGPVLRDTLEASNRRQATV*
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mRNA from alignment at tig00004435_pilon:316026..316559-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil8054.t1 ID=Gchil8054.t1|Name=Gchil8054.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=534bp|location=Sequence derived from alignment at tig00004435_pilon:316026..316559- (Gracilaria chilensis NLEC103_M9 male)
ATGAATAGGTTGCTGCCTAATAGAAGTGAAAATGACACTAACGAACAAAG
CCTCGACGAGACCGGCATTCCCGACCACATGAATGCAGAAGTGGTACACG
AAACGCATCCTATCGCATGTAATGAGGAATCCTCTTCCGCTAGTGACCTT
GAACGTTTTGAAGTAGATTATGACCCATCTGCCGCATCCTTCGATGCAAA
AGAAGAAATTGAATTTCGTTTTGCACAACAGAAGGCTTCGAGAAGACCGA
AAAACAGGAATAAAAGCGGTTTTAGAGATTGTGCTCACGGTGGAGAACAT
AAGGTGATGTTGGGTACGAGGAGACGGGCCTCAGTCCTGAAGAAACATTC
AAAAAGTATACTACGGCCCAGGGTAGTACCGCCCACAGCTGATTCCAAAT
CAGTCGATAAACACGGTGACATCGAAGTTGCTTCTACCTCCCAAAATGAT
TCTAATCATTTCAATGAAATTGATTGCGGTCCTGTGCTTCGCGACACATT
AGAGGCTTCGAATCGCAGGCAGGCCACTGTCTGA
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Coding sequence (CDS) from alignment at tig00004435_pilon:316026..316559-

>Gchil8054.t1 ID=Gchil8054.t1|Name=Gchil8054.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=534bp|location=Sequence derived from alignment at tig00004435_pilon:316026..316559- (Gracilaria chilensis NLEC103_M9 male)
ATGAATAGGTTGCTGCCTAATAGAAGTGAAAATGACACTAACGAACAAAG
CCTCGACGAGACCGGCATTCCCGACCACATGAATGCAGAAGTGGTACACG
AAACGCATCCTATCGCATGTAATGAGGAATCCTCTTCCGCTAGTGACCTT
GAACGTTTTGAAGTAGATTATGACCCATCTGCCGCATCCTTCGATGCAAA
AGAAGAAATTGAATTTCGTTTTGCACAACAGAAGGCTTCGAGAAGACCGA
AAAACAGGAATAAAAGCGGTTTTAGAGATTGTGCTCACGGTGGAGAACAT
AAGGTGATGTTGGGTACGAGGAGACGGGCCTCAGTCCTGAAGAAACATTC
AAAAAGTATACTACGGCCCAGGGTAGTACCGCCCACAGCTGATTCCAAAT
CAGTCGATAAACACGGTGACATCGAAGTTGCTTCTACCTCCCAAAATGAT
TCTAATCATTTCAATGAAATTGATTGCGGTCCTGTGCTTCGCGACACATT
AGAGGCTTCGAATCGCAGGCAGGCCACTGTCTGA
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