Gchil7827.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil7827.t1
Unique NameGchil7827.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length389
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004401_piloncontigtig00004401_pilon:503892..505494 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7827Gchil7827Gracilaria chilensis NLEC103_M9 malegenetig00004401_pilon 503892..505494 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7827.t1Gchil7827.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004401_pilon 503892..505494 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7827.t1.start1Gchil7827.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004401_pilon 503892..503894 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7827.t1.CDS1Gchil7827.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004401_pilon 503892..504194 +
Gchil7827.t1.CDS2Gchil7827.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004401_pilon 504631..505494 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7827.t1.exon1Gchil7827.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004401_pilon 503892..504194 +
Gchil7827.t1.exon2Gchil7827.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004401_pilon 504631..505494 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7827.t1.intron1Gchil7827.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004401_pilon 504195..504630 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7827.t1.stop1Gchil7827.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004401_pilon 505492..505494 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil7827.t1 ID=Gchil7827.t1|Name=Gchil7827.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=389bp
MAILIPNCGSPLRPSRIEDILEAMTRTPTQILGEPPLSALPLCPFRPPCT
SYEAALAIMRNFVDPITLLGESPPSQRRPASKHAAEEARERPPTFRRKAR
RGRGSERRRTTHVRSPVPFSELKDSRKSSDKLKLKRSAAEYSDSKKSDGR
KPKLSPAARAGMKDSKRKGDRQKSHKSALRESESKDSASRSAKKLPSSVP
LPRPVVRIPCSEPAAPRSTTPNSRKSWEKERRNEHSVSRRKESSVERSRR
DDAELSRRRRESSVEVASSRSEPRDTEKLRSGIDGDGFCNGDEAVSGQAE
KKRGAGGEIDHALLPDHKRELPKRKEKERRQAQDPQNSVVRDSDLDNEAL
RDKGRGRGRKKSAKAIATVRAKNIVIGTLSKSVKNTEM*
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spliced messenger RNA

>Gchil7827.t1 ID=Gchil7827.t1|Name=Gchil7827.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1167bp|location=Sequence derived from alignment at tig00004401_pilon:503892..505494+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCATTCTCATTCCGAACTGTGGCTCGCCTTTGCGTCCCTCGCGCAT
CGAGGATATCCTCGAGGCCATGACGCGCACTCCCACTCAAATCCTGGGCG
AGCCCCCGCTGTCGGCCCTTCCACTGTGCCCCTTCCGACCGCCCTGCACT
TCTTATGAAGCTGCACTTGCCATCATGCGCAATTTCGTCGATCCCATCAC
CTTGCTTGGAGAATCCCCGCCTTCACAGCGACGACCAGCTTCCAAACACG
CCGCCGAAGAGGCGCGAGAAAGGCCGCCAACATTCCGAAGAAAAGCGAGG
CGGGGAAGGGGATCGGAAAGACGCCGAACGACCCATGTTCGGTCCCCAGT
GCCGTTCTCCGAGCTCAAGGACTCGCGGAAGAGTTCTGATAAGCTTAAGC
TCAAGCGTTCTGCTGCAGAGTACTCTGACTCAAAGAAGAGCGACGGACGG
AAGCCCAAGCTATCTCCCGCGGCTAGAGCAGGCATGAAGGATTCTAAGAG
GAAAGGAGACAGGCAAAAATCGCACAAGTCGGCACTTCGTGAGAGCGAGT
CGAAGGATTCTGCTTCCAGGTCCGCCAAGAAGCTTCCTTCCTCCGTCCCA
CTTCCTCGCCCTGTGGTTCGCATTCCCTGTTCCGAACCTGCTGCACCAAG
GTCAACTACACCGAATTCGCGAAAATCGTGGGAGAAAGAGCGGCGTAACG
AGCATAGCGTTTCTCGGCGGAAGGAAAGTTCCGTGGAACGCAGTCGCCGT
GATGACGCGGAGCTGTCACGCAGACGAAGAGAAAGCTCGGTTGAGGTAGC
TTCGTCTCGCTCGGAGCCACGCGATACTGAAAAGCTGAGGAGTGGAATCG
ATGGTGATGGGTTTTGCAATGGGGATGAGGCTGTCTCTGGACAAGCTGAA
AAGAAACGAGGCGCTGGCGGCGAAATCGATCACGCCCTGCTTCCTGACCA
TAAGAGGGAGCTCCCAAAGCGCAAGGAAAAAGAGCGAAGACAAGCCCAAG
ATCCTCAGAACAGTGTCGTCAGGGACAGTGACCTGGACAATGAAGCACTT
CGAGACAAGGGCCGAGGGCGTGGAAGGAAGAAGTCCGCGAAGGCGATAGC
TACCGTGAGAGCGAAAAATATCGTGATAGGGACTCTGTCAAAGAGCGTAA
AAAACACAGAGATGTAA
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protein sequence of Gchil7827.t1

>Gchil7827.t1 ID=Gchil7827.t1|Name=Gchil7827.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=389bp
MAILIPNCGSPLRPSRIEDILEAMTRTPTQILGEPPLSALPLCPFRPPCT
SYEAALAIMRNFVDPITLLGESPPSQRRPASKHAAEEARERPPTFRRKAR
RGRGSERRRTTHVRSPVPFSELKDSRKSSDKLKLKRSAAEYSDSKKSDGR
KPKLSPAARAGMKDSKRKGDRQKSHKSALRESESKDSASRSAKKLPSSVP
LPRPVVRIPCSEPAAPRSTTPNSRKSWEKERRNEHSVSRRKESSVERSRR
DDAELSRRRRESSVEVASSRSEPRDTEKLRSGIDGDGFCNGDEAVSGQAE
KKRGAGGEIDHALLPDHKRELPKRKEKERRQAQDPQNSVVRDSDLDNEAL
RDKGRGRGRKKSAKAIATVRAKNIVIGTLSKSVKNTEM*
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mRNA from alignment at tig00004401_pilon:503892..505494+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil7827.t1 ID=Gchil7827.t1|Name=Gchil7827.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1603bp|location=Sequence derived from alignment at tig00004401_pilon:503892..505494+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCCATTCTCATTCCGAACTGTGGCTCGCCTTTGCGTCCCTCGCGCAT
CGAGGATATCCTCGAGGCCATGACGCGCACTCCCACTCAAATCCTGGGCG
AGCCCCCGCTGTCGGCCCTTCCACTGTGCCCCTTCCGACCGCCCTGCACT
TCTTATGAAGCTGCACTTGCCATCATGCGCAATTTCGTCGATCCCATCAC
CTTGCTTGGAGAATCCCCGCCTTCACAGCGACGACCAGCTTCCAAACACG
CCGCCGAAGAGGCGCGAGAAAGGCCGCCAACATTCCGAAGAAAAGCGAGG
CGGGTGTGCGCCTGAGCGTTGGTGAGAAGCTCAACGTGGACCCTGTCAAA
CAGGGCAAATCGCTCAAGCTCACAGTCAGGCTTTCCAAAAAGACACCAAC
TGCATTCGGACCCGTTTCATCGAGTAGAAAGGAGGAAGGAGTTGCTGTCT
GCTCCAAACCCGAAAGCGCCACAAAACCATCCGCAAAAGAACCATCCAAA
CAATCGCGGCGCCGAAAGGAAAAGTCGAGGCTCAGGTCTTCTCCCATCCC
TCCTTCAGGGGCGATGGCCGTTCAGACCGCACTAAGGTCTTCACCAGCAC
CTGAGTCCGATTCAAAGCACGCGCGGAAACGAAAGGACCGCCCTGCGTTC
AGGTTCTCTCCCGAACCACTTGCAGATACGAACGATGCGAGGAAGGTCAT
TGACAAATCAAGGTCCTCTGCCACGGTGGTGTCTGATAGGGAAGGGGATC
GGAAAGACGCCGAACGACCCATGTTCGGTCCCCAGTGCCGTTCTCCGAGC
TCAAGGACTCGCGGAAGAGTTCTGATAAGCTTAAGCTCAAGCGTTCTGCT
GCAGAGTACTCTGACTCAAAGAAGAGCGACGGACGGAAGCCCAAGCTATC
TCCCGCGGCTAGAGCAGGCATGAAGGATTCTAAGAGGAAAGGAGACAGGC
AAAAATCGCACAAGTCGGCACTTCGTGAGAGCGAGTCGAAGGATTCTGCT
TCCAGGTCCGCCAAGAAGCTTCCTTCCTCCGTCCCACTTCCTCGCCCTGT
GGTTCGCATTCCCTGTTCCGAACCTGCTGCACCAAGGTCAACTACACCGA
ATTCGCGAAAATCGTGGGAGAAAGAGCGGCGTAACGAGCATAGCGTTTCT
CGGCGGAAGGAAAGTTCCGTGGAACGCAGTCGCCGTGATGACGCGGAGCT
GTCACGCAGACGAAGAGAAAGCTCGGTTGAGGTAGCTTCGTCTCGCTCGG
AGCCACGCGATACTGAAAAGCTGAGGAGTGGAATCGATGGTGATGGGTTT
TGCAATGGGGATGAGGCTGTCTCTGGACAAGCTGAAAAGAAACGAGGCGC
TGGCGGCGAAATCGATCACGCCCTGCTTCCTGACCATAAGAGGGAGCTCC
CAAAGCGCAAGGAAAAAGAGCGAAGACAAGCCCAAGATCCTCAGAACAGT
GTCGTCAGGGACAGTGACCTGGACAATGAAGCACTTCGAGACAAGGGCCG
AGGGCGTGGAAGGAAGAAGTCCGCGAAGGCGATAGCTACCGTGAGAGCGA
AAAATATCGTGATAGGGACTCTGTCAAAGAGCGTAAAAAACACAGAGATG
TAA
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Coding sequence (CDS) from alignment at tig00004401_pilon:503892..505494+

>Gchil7827.t1 ID=Gchil7827.t1|Name=Gchil7827.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1167bp|location=Sequence derived from alignment at tig00004401_pilon:503892..505494+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCCATTCTCATTCCGAACTGTGGCTCGCCTTTGCGTCCCTCGCGCAT
CGAGGATATCCTCGAGGCCATGACGCGCACTCCCACTCAAATCCTGGGCG
AGCCCCCGCTGTCGGCCCTTCCACTGTGCCCCTTCCGACCGCCCTGCACT
TCTTATGAAGCTGCACTTGCCATCATGCGCAATTTCGTCGATCCCATCAC
CTTGCTTGGAGAATCCCCGCCTTCACAGCGACGACCAGCTTCCAAACACG
CCGCCGAAGAGGCGCGAGAAAGGCCGCCAACATTCCGAAGAAAAGCGAGG
CGGGGAAGGGGATCGGAAAGACGCCGAACGACCCATGTTCGGTCCCCAGT
GCCGTTCTCCGAGCTCAAGGACTCGCGGAAGAGTTCTGATAAGCTTAAGC
TCAAGCGTTCTGCTGCAGAGTACTCTGACTCAAAGAAGAGCGACGGACGG
AAGCCCAAGCTATCTCCCGCGGCTAGAGCAGGCATGAAGGATTCTAAGAG
GAAAGGAGACAGGCAAAAATCGCACAAGTCGGCACTTCGTGAGAGCGAGT
CGAAGGATTCTGCTTCCAGGTCCGCCAAGAAGCTTCCTTCCTCCGTCCCA
CTTCCTCGCCCTGTGGTTCGCATTCCCTGTTCCGAACCTGCTGCACCAAG
GTCAACTACACCGAATTCGCGAAAATCGTGGGAGAAAGAGCGGCGTAACG
AGCATAGCGTTTCTCGGCGGAAGGAAAGTTCCGTGGAACGCAGTCGCCGT
GATGACGCGGAGCTGTCACGCAGACGAAGAGAAAGCTCGGTTGAGGTAGC
TTCGTCTCGCTCGGAGCCACGCGATACTGAAAAGCTGAGGAGTGGAATCG
ATGGTGATGGGTTTTGCAATGGGGATGAGGCTGTCTCTGGACAAGCTGAA
AAGAAACGAGGCGCTGGCGGCGAAATCGATCACGCCCTGCTTCCTGACCA
TAAGAGGGAGCTCCCAAAGCGCAAGGAAAAAGAGCGAAGACAAGCCCAAG
ATCCTCAGAACAGTGTCGTCAGGGACAGTGACCTGGACAATGAAGCACTT
CGAGACAAGGGCCGAGGGCGTGGAAGGAAGAAGTCCGCGAAGGCGATAGC
TACCGTGAGAGCGAAAAATATCGTGATAGGGACTCTGTCAAAGAGCGTAA
AAAACACAGAGATGTAA
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