Gchil7824.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil7824.t1
Unique NameGchil7824.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length514
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004401_piloncontigtig00004401_pilon:463010..464551 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005709279.1
PFAMsSAICAR_synt
Max annot lvl2759|Eukaryota
KEGG rclassRC00064,RC00162
KEGG koko:K01923
KEGG ReactionR04591
KEGG Pathwayko00230,ko01100,ko01110,ko01130,map00230,map01100,map01110,map01130
KEGG ModuleM00048
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006163,GO:0006164,GO:0006188,GO:0006189,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009719,GO:0009725,GO:0009733,GO:0009987,GO:0010033,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0042221,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046040,GO:0046390,GO:0046483,GO:0050896,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
Evalue1.21e-206
EggNOG OGsCOG0152@1|root,KOG2835@2759|Eukaryota
EC6.3.2.6
Descriptionphosphoribosylaminoimidazole carboxylase activity
COG categoryF
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7824Gchil7824Gracilaria chilensis NLEC103_M9 malegenetig00004401_pilon 463010..464551 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7824.t1.stop1Gchil7824.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004401_pilon 463010..463012 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7824.t1.CDS1Gchil7824.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004401_pilon 463010..464551 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7824.t1.exon1Gchil7824.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004401_pilon 463010..464551 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7824.t1.start1Gchil7824.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004401_pilon 464549..464551 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7824.t1Gchil7824.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004401_pilon 463010..464551 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil7824.t1 ID=Gchil7824.t1|Name=Gchil7824.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=514bp
MSLRSSNAPLVPILMGSASDATFCKKIAAALTSLGIESELRIASAHKVPN
RLLGVLEHYESLQRPKVYIAVAGRSNALSGVLDCAVSSPVVSCPPYSDAF
GGADVFSSIRMPSGVAPMLVLDAGGAALAAAKILALGDEQIRLRVDALQR
ANRDRLYIDDAQLVSESYCDAIADVRLNGQTMVDTDAQQLFGAAKDVVTS
SRKGKVRDQYAFDGVVNGKNESLLALITTDRQSAFDRILAAIPFKGAVLN
KTAAFWFNITKHIVPNHVISVPHPNVTIARRCKPFPIEFVVRGYITGSTS
TSLWKNYSNGVRNYCGIEFKDGLVKNQKLESNVITPTTKEEAGDRLISPA
EVVKEQFMTQEDWDYCADKALELFEYGQKVAAENGLILVDTKYEFGRDED
GTIRLIDEIHTPDSSRYWLATSYAKRFGEGKEPENVDKEFLRLWFAENSD
PYDKSKKLPDAPADLVDELSRRYVMLYELITNGSFEDLTLDGGATNVTDC
MAQYVAELSVAAR*
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spliced messenger RNA

>Gchil7824.t1 ID=Gchil7824.t1|Name=Gchil7824.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1542bp|location=Sequence derived from alignment at tig00004401_pilon:463010..464551- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCACTGCGATCATCCAATGCTCCACTCGTTCCAATTCTCATGGGCTC
CGCTTCAGACGCAACTTTCTGCAAAAAAATCGCCGCCGCTTTAACCAGTC
TGGGAATCGAATCCGAGCTGCGCATAGCATCAGCTCACAAGGTTCCAAAC
CGCCTGCTCGGTGTTTTAGAGCATTATGAATCCTTGCAACGTCCAAAGGT
TTACATCGCCGTTGCTGGTCGATCGAATGCTTTGTCTGGAGTTCTGGATT
GTGCAGTGTCCTCTCCTGTAGTTTCTTGTCCACCATACTCAGATGCCTTT
GGTGGTGCCGATGTTTTCTCCAGCATTCGTATGCCGTCAGGAGTTGCTCC
AATGTTGGTTCTTGACGCTGGCGGTGCTGCCCTCGCTGCCGCCAAGATTT
TGGCGCTGGGTGACGAACAGATTCGTCTTCGCGTTGATGCCTTACAACGT
GCAAACAGAGATCGATTATATATTGATGATGCGCAACTAGTGTCGGAAAG
TTATTGTGATGCTATCGCTGACGTTAGGTTGAATGGACAGACCATGGTTG
ACACTGACGCTCAACAACTGTTTGGAGCTGCCAAGGATGTCGTTACATCC
TCGAGAAAGGGAAAGGTCCGTGACCAATATGCCTTTGATGGCGTTGTGAA
TGGTAAGAACGAATCCCTGTTGGCCTTGATCACCACCGATAGACAAAGCG
CTTTTGATCGTATTCTTGCAGCGATTCCGTTCAAAGGTGCTGTTCTCAAC
AAGACAGCCGCCTTCTGGTTTAACATCACCAAGCATATTGTCCCAAATCA
CGTCATTAGCGTCCCTCATCCGAATGTGACTATCGCGCGAAGGTGCAAAC
CATTCCCGATTGAGTTCGTCGTCAGGGGATACATCACCGGTAGCACCTCC
ACGTCGTTGTGGAAAAACTATTCAAATGGCGTGAGGAACTATTGTGGTAT
TGAATTCAAAGATGGTTTGGTGAAGAATCAAAAGCTGGAATCTAACGTCA
TTACGCCCACTACAAAGGAAGAAGCTGGTGACCGTCTCATTTCACCGGCG
GAAGTTGTTAAAGAACAATTTATGACTCAGGAGGACTGGGACTATTGTGC
TGACAAAGCATTAGAGTTGTTCGAATATGGGCAGAAAGTTGCTGCTGAAA
ACGGTCTCATCCTTGTCGACACAAAATATGAGTTTGGAAGAGATGAAGAT
GGTACTATCCGACTGATTGATGAGATTCACACTCCTGATTCGTCTAGATA
TTGGCTTGCGACTTCATATGCAAAGCGTTTTGGGGAAGGAAAGGAACCGG
AGAATGTAGATAAAGAATTCTTAAGATTGTGGTTTGCGGAGAATAGTGAC
CCGTACGACAAGAGTAAGAAGTTACCTGATGCTCCGGCTGATCTGGTCGA
TGAGCTCAGTCGGAGATACGTCATGCTTTATGAACTCATCACAAATGGTT
CTTTTGAGGACCTAACTTTAGATGGAGGTGCTACGAATGTAACTGATTGT
ATGGCACAATATGTTGCTGAGTTATCGGTGGCTGCGCGGTAA
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protein sequence of Gchil7824.t1

>Gchil7824.t1 ID=Gchil7824.t1|Name=Gchil7824.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=514bp
MSLRSSNAPLVPILMGSASDATFCKKIAAALTSLGIESELRIASAHKVPN
RLLGVLEHYESLQRPKVYIAVAGRSNALSGVLDCAVSSPVVSCPPYSDAF
GGADVFSSIRMPSGVAPMLVLDAGGAALAAAKILALGDEQIRLRVDALQR
ANRDRLYIDDAQLVSESYCDAIADVRLNGQTMVDTDAQQLFGAAKDVVTS
SRKGKVRDQYAFDGVVNGKNESLLALITTDRQSAFDRILAAIPFKGAVLN
KTAAFWFNITKHIVPNHVISVPHPNVTIARRCKPFPIEFVVRGYITGSTS
TSLWKNYSNGVRNYCGIEFKDGLVKNQKLESNVITPTTKEEAGDRLISPA
EVVKEQFMTQEDWDYCADKALELFEYGQKVAAENGLILVDTKYEFGRDED
GTIRLIDEIHTPDSSRYWLATSYAKRFGEGKEPENVDKEFLRLWFAENSD
PYDKSKKLPDAPADLVDELSRRYVMLYELITNGSFEDLTLDGGATNVTDC
MAQYVAELSVAAR*
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mRNA from alignment at tig00004401_pilon:463010..464551-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil7824.t1 ID=Gchil7824.t1|Name=Gchil7824.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1542bp|location=Sequence derived from alignment at tig00004401_pilon:463010..464551- (Gracilaria chilensis NLEC103_M9 male)
ATGTCACTGCGATCATCCAATGCTCCACTCGTTCCAATTCTCATGGGCTC
CGCTTCAGACGCAACTTTCTGCAAAAAAATCGCCGCCGCTTTAACCAGTC
TGGGAATCGAATCCGAGCTGCGCATAGCATCAGCTCACAAGGTTCCAAAC
CGCCTGCTCGGTGTTTTAGAGCATTATGAATCCTTGCAACGTCCAAAGGT
TTACATCGCCGTTGCTGGTCGATCGAATGCTTTGTCTGGAGTTCTGGATT
GTGCAGTGTCCTCTCCTGTAGTTTCTTGTCCACCATACTCAGATGCCTTT
GGTGGTGCCGATGTTTTCTCCAGCATTCGTATGCCGTCAGGAGTTGCTCC
AATGTTGGTTCTTGACGCTGGCGGTGCTGCCCTCGCTGCCGCCAAGATTT
TGGCGCTGGGTGACGAACAGATTCGTCTTCGCGTTGATGCCTTACAACGT
GCAAACAGAGATCGATTATATATTGATGATGCGCAACTAGTGTCGGAAAG
TTATTGTGATGCTATCGCTGACGTTAGGTTGAATGGACAGACCATGGTTG
ACACTGACGCTCAACAACTGTTTGGAGCTGCCAAGGATGTCGTTACATCC
TCGAGAAAGGGAAAGGTCCGTGACCAATATGCCTTTGATGGCGTTGTGAA
TGGTAAGAACGAATCCCTGTTGGCCTTGATCACCACCGATAGACAAAGCG
CTTTTGATCGTATTCTTGCAGCGATTCCGTTCAAAGGTGCTGTTCTCAAC
AAGACAGCCGCCTTCTGGTTTAACATCACCAAGCATATTGTCCCAAATCA
CGTCATTAGCGTCCCTCATCCGAATGTGACTATCGCGCGAAGGTGCAAAC
CATTCCCGATTGAGTTCGTCGTCAGGGGATACATCACCGGTAGCACCTCC
ACGTCGTTGTGGAAAAACTATTCAAATGGCGTGAGGAACTATTGTGGTAT
TGAATTCAAAGATGGTTTGGTGAAGAATCAAAAGCTGGAATCTAACGTCA
TTACGCCCACTACAAAGGAAGAAGCTGGTGACCGTCTCATTTCACCGGCG
GAAGTTGTTAAAGAACAATTTATGACTCAGGAGGACTGGGACTATTGTGC
TGACAAAGCATTAGAGTTGTTCGAATATGGGCAGAAAGTTGCTGCTGAAA
ACGGTCTCATCCTTGTCGACACAAAATATGAGTTTGGAAGAGATGAAGAT
GGTACTATCCGACTGATTGATGAGATTCACACTCCTGATTCGTCTAGATA
TTGGCTTGCGACTTCATATGCAAAGCGTTTTGGGGAAGGAAAGGAACCGG
AGAATGTAGATAAAGAATTCTTAAGATTGTGGTTTGCGGAGAATAGTGAC
CCGTACGACAAGAGTAAGAAGTTACCTGATGCTCCGGCTGATCTGGTCGA
TGAGCTCAGTCGGAGATACGTCATGCTTTATGAACTCATCACAAATGGTT
CTTTTGAGGACCTAACTTTAGATGGAGGTGCTACGAATGTAACTGATTGT
ATGGCACAATATGTTGCTGAGTTATCGGTGGCTGCGCGGTAA
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Coding sequence (CDS) from alignment at tig00004401_pilon:463010..464551-

>Gchil7824.t1 ID=Gchil7824.t1|Name=Gchil7824.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1542bp|location=Sequence derived from alignment at tig00004401_pilon:463010..464551- (Gracilaria chilensis NLEC103_M9 male)
ATGTCACTGCGATCATCCAATGCTCCACTCGTTCCAATTCTCATGGGCTC
CGCTTCAGACGCAACTTTCTGCAAAAAAATCGCCGCCGCTTTAACCAGTC
TGGGAATCGAATCCGAGCTGCGCATAGCATCAGCTCACAAGGTTCCAAAC
CGCCTGCTCGGTGTTTTAGAGCATTATGAATCCTTGCAACGTCCAAAGGT
TTACATCGCCGTTGCTGGTCGATCGAATGCTTTGTCTGGAGTTCTGGATT
GTGCAGTGTCCTCTCCTGTAGTTTCTTGTCCACCATACTCAGATGCCTTT
GGTGGTGCCGATGTTTTCTCCAGCATTCGTATGCCGTCAGGAGTTGCTCC
AATGTTGGTTCTTGACGCTGGCGGTGCTGCCCTCGCTGCCGCCAAGATTT
TGGCGCTGGGTGACGAACAGATTCGTCTTCGCGTTGATGCCTTACAACGT
GCAAACAGAGATCGATTATATATTGATGATGCGCAACTAGTGTCGGAAAG
TTATTGTGATGCTATCGCTGACGTTAGGTTGAATGGACAGACCATGGTTG
ACACTGACGCTCAACAACTGTTTGGAGCTGCCAAGGATGTCGTTACATCC
TCGAGAAAGGGAAAGGTCCGTGACCAATATGCCTTTGATGGCGTTGTGAA
TGGTAAGAACGAATCCCTGTTGGCCTTGATCACCACCGATAGACAAAGCG
CTTTTGATCGTATTCTTGCAGCGATTCCGTTCAAAGGTGCTGTTCTCAAC
AAGACAGCCGCCTTCTGGTTTAACATCACCAAGCATATTGTCCCAAATCA
CGTCATTAGCGTCCCTCATCCGAATGTGACTATCGCGCGAAGGTGCAAAC
CATTCCCGATTGAGTTCGTCGTCAGGGGATACATCACCGGTAGCACCTCC
ACGTCGTTGTGGAAAAACTATTCAAATGGCGTGAGGAACTATTGTGGTAT
TGAATTCAAAGATGGTTTGGTGAAGAATCAAAAGCTGGAATCTAACGTCA
TTACGCCCACTACAAAGGAAGAAGCTGGTGACCGTCTCATTTCACCGGCG
GAAGTTGTTAAAGAACAATTTATGACTCAGGAGGACTGGGACTATTGTGC
TGACAAAGCATTAGAGTTGTTCGAATATGGGCAGAAAGTTGCTGCTGAAA
ACGGTCTCATCCTTGTCGACACAAAATATGAGTTTGGAAGAGATGAAGAT
GGTACTATCCGACTGATTGATGAGATTCACACTCCTGATTCGTCTAGATA
TTGGCTTGCGACTTCATATGCAAAGCGTTTTGGGGAAGGAAAGGAACCGG
AGAATGTAGATAAAGAATTCTTAAGATTGTGGTTTGCGGAGAATAGTGAC
CCGTACGACAAGAGTAAGAAGTTACCTGATGCTCCGGCTGATCTGGTCGA
TGAGCTCAGTCGGAGATACGTCATGCTTTATGAACTCATCACAAATGGTT
CTTTTGAGGACCTAACTTTAGATGGAGGTGCTACGAATGTAACTGATTGT
ATGGCACAATATGTTGCTGAGTTATCGGTGGCTGCGCGGTAA
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