Gchil7821.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil7821.t1
Unique NameGchil7821.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length355
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004401_piloncontigtig00004401_pilon:439421..441241 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7821Gchil7821Gracilaria chilensis NLEC103_M9 malegenetig00004401_pilon 439421..441241 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7821.t1Gchil7821.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004401_pilon 439421..441241 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7821.t1.start1Gchil7821.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004401_pilon 439421..439423 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7821.t1.CDS1Gchil7821.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004401_pilon 439421..440079 +
Gchil7821.t1.CDS2Gchil7821.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004401_pilon 440836..441241 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7821.t1.exon1Gchil7821.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004401_pilon 439421..440079 +
Gchil7821.t1.exon2Gchil7821.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004401_pilon 440836..441241 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7821.t1.intron1Gchil7821.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004401_pilon 440080..440835 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7821.t1.stop1Gchil7821.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004401_pilon 441239..441241 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil7821.t1 ID=Gchil7821.t1|Name=Gchil7821.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=355bp
MLEIMSSGTRAQQAQVHERLLRRAQNFQPSLRQAHVLRQVALGTLQDYRA
DATFVQEEVANSIRNKVPSINSFLEEEYLASPTYPIPLLRDIATFYGCLA
MPALETVQDKFVATSPLRQFCWILITLNEVPMEDLNDLVMMIVPLRQAPL
PQIAAKLHSASTRVIEATVQAAGPARSEGSERRIAPEHGRLPPRKHDLQL
QPEANRPPNSIREGNRPTGQMKRQLCESDTHLQREHSEALKRETRSRLAS
QESAVHIISDLVNDLGSIGNQEQDMDDEFTMETQEPKGNSGEGLQEVLHL
FDKLTSTTPENSDESNTDAVNAFDLLQKVDEEALTYHTAGGMGHIIREKE
PHFQ*
back to top

spliced messenger RNA

>Gchil7821.t1 ID=Gchil7821.t1|Name=Gchil7821.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1065bp|location=Sequence derived from alignment at tig00004401_pilon:439421..441241+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTGGAAATCATGAGTTCTGGTACGCGCGCTCAACAAGCGCAAGTTCA
TGAACGCCTACTCCGCCGTGCCCAGAATTTTCAGCCGTCTCTCCGTCAGG
CTCATGTACTTCGTCAAGTGGCACTGGGGACTCTCCAAGATTATCGCGCC
GACGCCACATTTGTCCAGGAAGAAGTGGCCAACTCCATTCGCAACAAAGT
TCCGAGTATCAACTCTTTCCTTGAGGAAGAATACTTGGCCTCTCCAACTT
ACCCGATCCCTTTGCTGAGAGATATTGCAACTTTTTATGGATGTTTGGCG
ATGCCCGCTCTGGAAACCGTGCAAGATAAGTTCGTCGCTACATCCCCGTT
GAGGCAATTCTGCTGGATCCTCATCACTCTTAACGAGGTACCCATGGAAG
ATCTCAATGACCTGGTGATGATGATTGTGCCCCTAAGACAGGCGCCACTT
CCGCAAATTGCAGCAAAGCTGCATAGCGCAAGCACAAGGGTCATCGAAGC
CACCGTACAAGCCGCCGGACCAGCTCGATCAGAAGGATCTGAAAGGCGAA
TTGCGCCTGAGCATGGTAGACTGCCACCACGAAAGCACGATCTTCAACTG
CAACCTGAAGCCAATCGTCCGCCGAACTCAATACGAGAAGGAAATAGGCC
AACCGGGCAGATGAAACGTCAGTTATGTGAATCGGATACTCATCTTCAGC
GGGAACACTCGGAGGCTTTGAAGAGAGAGACACGCAGTCGCCTCGCATCT
CAAGAGAGCGCTGTTCACATTATAAGTGACTTGGTCAACGACTTGGGAAG
TATTGGTAACCAAGAACAAGATATGGATGATGAATTCACTATGGAAACAC
AGGAACCTAAGGGTAACAGTGGTGAAGGCCTTCAAGAAGTTTTACACTTG
TTCGACAAACTCACTTCCACTACTCCTGAAAATAGTGATGAATCCAACAC
TGATGCTGTAAATGCCTTCGATCTTTTACAAAAAGTGGATGAGGAAGCCC
TGACATACCATACAGCTGGAGGAATGGGACACATCATTCGAGAGAAGGAG
CCGCATTTTCAGTAA
back to top

protein sequence of Gchil7821.t1

>Gchil7821.t1 ID=Gchil7821.t1|Name=Gchil7821.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=355bp
MLEIMSSGTRAQQAQVHERLLRRAQNFQPSLRQAHVLRQVALGTLQDYRA
DATFVQEEVANSIRNKVPSINSFLEEEYLASPTYPIPLLRDIATFYGCLA
MPALETVQDKFVATSPLRQFCWILITLNEVPMEDLNDLVMMIVPLRQAPL
PQIAAKLHSASTRVIEATVQAAGPARSEGSERRIAPEHGRLPPRKHDLQL
QPEANRPPNSIREGNRPTGQMKRQLCESDTHLQREHSEALKRETRSRLAS
QESAVHIISDLVNDLGSIGNQEQDMDDEFTMETQEPKGNSGEGLQEVLHL
FDKLTSTTPENSDESNTDAVNAFDLLQKVDEEALTYHTAGGMGHIIREKE
PHFQ*
back to top

mRNA from alignment at tig00004401_pilon:439421..441241+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil7821.t1 ID=Gchil7821.t1|Name=Gchil7821.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1821bp|location=Sequence derived from alignment at tig00004401_pilon:439421..441241+ (Gracilaria chilensis NLEC103_M9 male)
ATGTTGGAAATCATGAGTTCTGGTACGCGCGCTCAACAAGCGCAAGTTCA
TGAACGCCTACTCCGCCGTGCCCAGAATTTTCAGCCGTCTCTCCGTCAGG
CTCATGTACTTCGTCAAGTGGCACTGGGGACTCTCCAAGATTATCGCGCC
GACGCCACATTTGTCCAGGAAGAAGTGGCCAACTCCATTCGCAACAAAGT
TCCGAGTATCAACTCTTTCCTTGAGGAAGAATACTTGGCCTCTCCAACTT
ACCCGATCCCTTTGCTGAGAGATATTGCAACTTTTTATGGATGTTTGGCG
ATGCCCGCTCTGGAAACCGTGCAAGATAAGTTCGTCGCTACATCCCCGTT
GAGGCAATTCTGCTGGATCCTCATCACTCTTAACGAGGTACCCATGGAAG
ATCTCAATGACCTGGTGATGATGATTGTGCCCCTAAGACAGGCGCCACTT
CCGCAAATTGCAGCAAAGCTGCATAGCGCAAGCACAAGGGTCATCGAAGC
CACCGTACAAGCCGCCGGACCAGCTCGATCAGAAGGATCTGAAAGGCGAA
TTGCGCCTGAGCATGGTAGACTGCCACCACGAAAGCACGATCTTCAACTG
CAACCTGAAGCCAATCGTCCGCCGAACTCAATACGAGAAGGAAATAGGCC
AACCGGGCAGTCTTATcaggaattggcaagcactgttcaggcaatctacg
ggtccttcaaggGAAAGAagttcagtggtgatgctttgcagtgcatccca
gaatccattcgggattacaacattcttggttttcaactcggcctcagtga
caaaatgagggcaaagttcttcgtttgcatctttgaagattctgccaaGT
CTCACTTCATCGTAAACATTCGAGAAGATCTGAGCTACGCCGAAATGGAG
CGAATCATGTGAacggagttcgagtcatacgcacgtcgacttcaagtgca
tatgacgctccgagggattcgcattgaagctgctatatctgaaaatgaag
acgtctcaaacgattcagacgatctaaattgtttagtgaagcgaatcaac
cgtcttgctccgcagtgtcctgaatgtttctgctcagagtaccataagat
tcagttcCTCCGCCACGCTGTGATCGGAAAGGAATGGGCCACTCAGCCCA
TTTCGCAGATAACGACGATGAAGATCCCGTACAACGGATTCGTATCGACA
CTCCATGAAGCCGTACAATATTCGGAGTAAGTTCGTCGGCACAAGCTTTC
GTCATCTGCTAGGATAGGAACGTCGCCTTCGCCCATAATGTATCAACGAT
ATGTTCGTCCGCCGAGTTTCGTCTCTAAGTTTGGTCCAAAGCCCCCTCGT
TACGCACTAACAAACAGGGGGAGTGGACAATTTCGCAAGAACCTATTGGA
TAGGAATGGGAATAGGATGAAACGTCAGTTATGTGAATCGGATACTCATC
TTCAGCGGGAACACTCGGAGGCTTTGAAGAGAGAGACACGCAGTCGCCTC
GCATCTCAAGAGAGCGCTGTTCACATTATAAGTGACTTGGTCAACGACTT
GGGAAGTATTGGTAACCAAGAACAAGATATGGATGATGAATTCACTATGG
AAACACAGGAACCTAAGGGTAACAGTGGTGAAGGCCTTCAAGAAGTTTTA
CACTTGTTCGACAAACTCACTTCCACTACTCCTGAAAATAGTGATGAATC
CAACACTGATGCTGTAAATGCCTTCGATCTTTTACAAAAAGTGGATGAGG
AAGCCCTGACATACCATACAGCTGGAGGAATGGGACACATCATTCGAGAG
AAGGAGCCGCATTTTCAGTAA
back to top

Coding sequence (CDS) from alignment at tig00004401_pilon:439421..441241+

>Gchil7821.t1 ID=Gchil7821.t1|Name=Gchil7821.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1065bp|location=Sequence derived from alignment at tig00004401_pilon:439421..441241+ (Gracilaria chilensis NLEC103_M9 male)
ATGTTGGAAATCATGAGTTCTGGTACGCGCGCTCAACAAGCGCAAGTTCA
TGAACGCCTACTCCGCCGTGCCCAGAATTTTCAGCCGTCTCTCCGTCAGG
CTCATGTACTTCGTCAAGTGGCACTGGGGACTCTCCAAGATTATCGCGCC
GACGCCACATTTGTCCAGGAAGAAGTGGCCAACTCCATTCGCAACAAAGT
TCCGAGTATCAACTCTTTCCTTGAGGAAGAATACTTGGCCTCTCCAACTT
ACCCGATCCCTTTGCTGAGAGATATTGCAACTTTTTATGGATGTTTGGCG
ATGCCCGCTCTGGAAACCGTGCAAGATAAGTTCGTCGCTACATCCCCGTT
GAGGCAATTCTGCTGGATCCTCATCACTCTTAACGAGGTACCCATGGAAG
ATCTCAATGACCTGGTGATGATGATTGTGCCCCTAAGACAGGCGCCACTT
CCGCAAATTGCAGCAAAGCTGCATAGCGCAAGCACAAGGGTCATCGAAGC
CACCGTACAAGCCGCCGGACCAGCTCGATCAGAAGGATCTGAAAGGCGAA
TTGCGCCTGAGCATGGTAGACTGCCACCACGAAAGCACGATCTTCAACTG
CAACCTGAAGCCAATCGTCCGCCGAACTCAATACGAGAAGGAAATAGGCC
AACCGGGCAGATGAAACGTCAGTTATGTGAATCGGATACTCATCTTCAGC
GGGAACACTCGGAGGCTTTGAAGAGAGAGACACGCAGTCGCCTCGCATCT
CAAGAGAGCGCTGTTCACATTATAAGTGACTTGGTCAACGACTTGGGAAG
TATTGGTAACCAAGAACAAGATATGGATGATGAATTCACTATGGAAACAC
AGGAACCTAAGGGTAACAGTGGTGAAGGCCTTCAAGAAGTTTTACACTTG
TTCGACAAACTCACTTCCACTACTCCTGAAAATAGTGATGAATCCAACAC
TGATGCTGTAAATGCCTTCGATCTTTTACAAAAAGTGGATGAGGAAGCCC
TGACATACCATACAGCTGGAGGAATGGGACACATCATTCGAGAGAAGGAG
CCGCATTTTCAGTAA
back to top