Gchil7816.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil7816.t1
Unique NameGchil7816.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length448
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004401_piloncontigtig00004401_pilon:400203..401546 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7816Gchil7816Gracilaria chilensis NLEC103_M9 malegenetig00004401_pilon 400203..401546 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7816.t1.start1Gchil7816.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004401_pilon 400203..400205 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7816.t1.CDS1Gchil7816.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004401_pilon 400203..401546 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7816.t1.exon1Gchil7816.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004401_pilon 400203..401546 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7816.t1.stop1Gchil7816.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004401_pilon 401544..401546 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7816.t1Gchil7816.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004401_pilon 400203..401546 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil7816.t1 ID=Gchil7816.t1|Name=Gchil7816.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=448bp
MIRNDHLTYAGAESVFRNWRPQDDSIYEMVFSALITVFVYQLAKLVLELC
LGQKRSGEIPVSDLYLYVVLSGLSFSLVVSSFRSIIQLAQEAEDLSLSTA
MKSKQSRRTAWTVGKFALLLLAIPSIQVVGLFFGVEGETDISFKDVNFGG
LALGLVKDVPTITQNNTSRCQKLETRLGHGETERTNFFRCYGISEPLPFE
TGANLGAGSFLVFLMSTSTNIGLTVVVPGKRWISFLSLDINDGKNPYSLR
NVLSLEQKSRILEVGVQKMVKSCPSAVQTKGVDVSWVFPSLTESESEQPR
LSVLVECADYDENHLVDVAFGMLNNVSFIHTDHFDVSESINAEEFVSGDD
LVFFRRRGSNASLLAMLIATVVVITGRIIVGLVLYNEGPKALEVILKDGL
AVKCCDSLLQYEQIVHYTSEREKSNGGNSCFWSDTETCSSGHTDSGR*
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spliced messenger RNA

>Gchil7816.t1 ID=Gchil7816.t1|Name=Gchil7816.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1344bp|location=Sequence derived from alignment at tig00004401_pilon:400203..401546+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATTCGCAACGACCATTTGACATACGCTGGGGCTGAGTCGGTGTTTCG
AAATTGGCGACCGCAGGATGACAGCATCTACGAAATGGTGTTTTCTGCAC
TGATTACGGTCTTCGTCTACCAGCTTGCCAAACTAGTTCTTGAACTTTGC
CTTGGCCAAAAACGTAGTGGCGAGATACCAGTGTCAGATCTCTACCTATA
CGTTGTTTTGTCCGGACTCTCATTTTCCTTGGTCGTCTCTTCTTTTCGAT
CAATTATCCAACTCGCGCAAGAGGCTGAGGATTTGTCTCTGAGCACCGCT
ATGAAGTCTAAACAGTCTCGTCGTACTGCATGGACAGTTGGAAAGTTTGC
ATTGCTCTTGCTCGCAATACCCAGCATTCAGGTTGTTGGTCTGTTTTTTG
GCGTCGAGGGAGAAACTGATATCAGCTTCAAGGACGTAAACTTTGGTGGC
TTGGCCTTGGGGCTGGTTAAGGACGTACCTACGATTACACAGAATAATAC
CTCTAGATGTCAAAAACTTGAAACACGCCTTGGACATGGAGAAACAGAAA
GAACTAATTTCTTTCGATGTTATGGAATATCTGAACCACTTCCCTTCGAA
ACAGGGGCGAATTTGGGGGCTGGGAGTTTTCTGGTTTTTTTGATGTCAAC
TTCGACCAATATTGGCTTGACGGTTGTAGTTCCAGGCAAGCGATGGATTT
CTTTTCTTTCCCTTGATATCAATGACGGGAAAAACCCCTACTCACTGCGC
AACGTGCTATCCCTCGAACAAAAATCTCGGATATTAGAAGTCGGGGTACA
GAAAATGGTGAAATCTTGCCCCTCGGCAGTGCAAACAAAGGGAGTTGACG
TTTCTTGGGTTTTTCCTTCTCTAACTGAGAGTGAATCAGAGCAGCCGAGA
CTGAGTGTGCTTGTTGAATGTGCTGATTATGACGAAAATCATCTTGTCGA
TGTGGCATTCGGAATGCTGAACAATGTTTCCTTCATACATACGGATCATT
TTGACGTTTCCGAATCAATCAATGCGGAAGAGTTTGTCTCCGGGGATGAT
CTTGTATTTTTCCGAAGAAGGGGAAGTAACGCGTCACTACTGGCGATGCT
AATAGCCACTGTTGTCGTGATAACTGGTAGGATAATAGTTGGACTTGTAC
TTTACAACGAAGGCCCCAAGGCGCTGGAAGTGATCCTCAAGGATGGATTG
GCAGTGAAATGTTGCGATTCTTTACTTCAGTATGAGCAGATAGTACACTA
CACAAGCGAGAGAGAGAAATCAAATGGGGGAAATTCTTGCTTCTGGAGTG
ACACAGAAACTTGCAGCAGTGGGCACACGGATTCGGGCAGATGA
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protein sequence of Gchil7816.t1

>Gchil7816.t1 ID=Gchil7816.t1|Name=Gchil7816.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=448bp
MIRNDHLTYAGAESVFRNWRPQDDSIYEMVFSALITVFVYQLAKLVLELC
LGQKRSGEIPVSDLYLYVVLSGLSFSLVVSSFRSIIQLAQEAEDLSLSTA
MKSKQSRRTAWTVGKFALLLLAIPSIQVVGLFFGVEGETDISFKDVNFGG
LALGLVKDVPTITQNNTSRCQKLETRLGHGETERTNFFRCYGISEPLPFE
TGANLGAGSFLVFLMSTSTNIGLTVVVPGKRWISFLSLDINDGKNPYSLR
NVLSLEQKSRILEVGVQKMVKSCPSAVQTKGVDVSWVFPSLTESESEQPR
LSVLVECADYDENHLVDVAFGMLNNVSFIHTDHFDVSESINAEEFVSGDD
LVFFRRRGSNASLLAMLIATVVVITGRIIVGLVLYNEGPKALEVILKDGL
AVKCCDSLLQYEQIVHYTSEREKSNGGNSCFWSDTETCSSGHTDSGR*
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mRNA from alignment at tig00004401_pilon:400203..401546+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil7816.t1 ID=Gchil7816.t1|Name=Gchil7816.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1344bp|location=Sequence derived from alignment at tig00004401_pilon:400203..401546+ (Gracilaria chilensis NLEC103_M9 male)
ATGATTCGCAACGACCATTTGACATACGCTGGGGCTGAGTCGGTGTTTCG
AAATTGGCGACCGCAGGATGACAGCATCTACGAAATGGTGTTTTCTGCAC
TGATTACGGTCTTCGTCTACCAGCTTGCCAAACTAGTTCTTGAACTTTGC
CTTGGCCAAAAACGTAGTGGCGAGATACCAGTGTCAGATCTCTACCTATA
CGTTGTTTTGTCCGGACTCTCATTTTCCTTGGTCGTCTCTTCTTTTCGAT
CAATTATCCAACTCGCGCAAGAGGCTGAGGATTTGTCTCTGAGCACCGCT
ATGAAGTCTAAACAGTCTCGTCGTACTGCATGGACAGTTGGAAAGTTTGC
ATTGCTCTTGCTCGCAATACCCAGCATTCAGGTTGTTGGTCTGTTTTTTG
GCGTCGAGGGAGAAACTGATATCAGCTTCAAGGACGTAAACTTTGGTGGC
TTGGCCTTGGGGCTGGTTAAGGACGTACCTACGATTACACAGAATAATAC
CTCTAGATGTCAAAAACTTGAAACACGCCTTGGACATGGAGAAACAGAAA
GAACTAATTTCTTTCGATGTTATGGAATATCTGAACCACTTCCCTTCGAA
ACAGGGGCGAATTTGGGGGCTGGGAGTTTTCTGGTTTTTTTGATGTCAAC
TTCGACCAATATTGGCTTGACGGTTGTAGTTCCAGGCAAGCGATGGATTT
CTTTTCTTTCCCTTGATATCAATGACGGGAAAAACCCCTACTCACTGCGC
AACGTGCTATCCCTCGAACAAAAATCTCGGATATTAGAAGTCGGGGTACA
GAAAATGGTGAAATCTTGCCCCTCGGCAGTGCAAACAAAGGGAGTTGACG
TTTCTTGGGTTTTTCCTTCTCTAACTGAGAGTGAATCAGAGCAGCCGAGA
CTGAGTGTGCTTGTTGAATGTGCTGATTATGACGAAAATCATCTTGTCGA
TGTGGCATTCGGAATGCTGAACAATGTTTCCTTCATACATACGGATCATT
TTGACGTTTCCGAATCAATCAATGCGGAAGAGTTTGTCTCCGGGGATGAT
CTTGTATTTTTCCGAAGAAGGGGAAGTAACGCGTCACTACTGGCGATGCT
AATAGCCACTGTTGTCGTGATAACTGGTAGGATAATAGTTGGACTTGTAC
TTTACAACGAAGGCCCCAAGGCGCTGGAAGTGATCCTCAAGGATGGATTG
GCAGTGAAATGTTGCGATTCTTTACTTCAGTATGAGCAGATAGTACACTA
CACAAGCGAGAGAGAGAAATCAAATGGGGGAAATTCTTGCTTCTGGAGTG
ACACAGAAACTTGCAGCAGTGGGCACACGGATTCGGGCAGATGA
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Coding sequence (CDS) from alignment at tig00004401_pilon:400203..401546+

>Gchil7816.t1 ID=Gchil7816.t1|Name=Gchil7816.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1344bp|location=Sequence derived from alignment at tig00004401_pilon:400203..401546+ (Gracilaria chilensis NLEC103_M9 male)
ATGATTCGCAACGACCATTTGACATACGCTGGGGCTGAGTCGGTGTTTCG
AAATTGGCGACCGCAGGATGACAGCATCTACGAAATGGTGTTTTCTGCAC
TGATTACGGTCTTCGTCTACCAGCTTGCCAAACTAGTTCTTGAACTTTGC
CTTGGCCAAAAACGTAGTGGCGAGATACCAGTGTCAGATCTCTACCTATA
CGTTGTTTTGTCCGGACTCTCATTTTCCTTGGTCGTCTCTTCTTTTCGAT
CAATTATCCAACTCGCGCAAGAGGCTGAGGATTTGTCTCTGAGCACCGCT
ATGAAGTCTAAACAGTCTCGTCGTACTGCATGGACAGTTGGAAAGTTTGC
ATTGCTCTTGCTCGCAATACCCAGCATTCAGGTTGTTGGTCTGTTTTTTG
GCGTCGAGGGAGAAACTGATATCAGCTTCAAGGACGTAAACTTTGGTGGC
TTGGCCTTGGGGCTGGTTAAGGACGTACCTACGATTACACAGAATAATAC
CTCTAGATGTCAAAAACTTGAAACACGCCTTGGACATGGAGAAACAGAAA
GAACTAATTTCTTTCGATGTTATGGAATATCTGAACCACTTCCCTTCGAA
ACAGGGGCGAATTTGGGGGCTGGGAGTTTTCTGGTTTTTTTGATGTCAAC
TTCGACCAATATTGGCTTGACGGTTGTAGTTCCAGGCAAGCGATGGATTT
CTTTTCTTTCCCTTGATATCAATGACGGGAAAAACCCCTACTCACTGCGC
AACGTGCTATCCCTCGAACAAAAATCTCGGATATTAGAAGTCGGGGTACA
GAAAATGGTGAAATCTTGCCCCTCGGCAGTGCAAACAAAGGGAGTTGACG
TTTCTTGGGTTTTTCCTTCTCTAACTGAGAGTGAATCAGAGCAGCCGAGA
CTGAGTGTGCTTGTTGAATGTGCTGATTATGACGAAAATCATCTTGTCGA
TGTGGCATTCGGAATGCTGAACAATGTTTCCTTCATACATACGGATCATT
TTGACGTTTCCGAATCAATCAATGCGGAAGAGTTTGTCTCCGGGGATGAT
CTTGTATTTTTCCGAAGAAGGGGAAGTAACGCGTCACTACTGGCGATGCT
AATAGCCACTGTTGTCGTGATAACTGGTAGGATAATAGTTGGACTTGTAC
TTTACAACGAAGGCCCCAAGGCGCTGGAAGTGATCCTCAAGGATGGATTG
GCAGTGAAATGTTGCGATTCTTTACTTCAGTATGAGCAGATAGTACACTA
CACAAGCGAGAGAGAGAAATCAAATGGGGGAAATTCTTGCTTCTGGAGTG
ACACAGAAACTTGCAGCAGTGGGCACACGGATTCGGGCAGATGA
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