Gchil7815.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil7815.t1
Unique NameGchil7815.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length464
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004401_piloncontigtig00004401_pilon:395486..396877 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7815Gchil7815Gracilaria chilensis NLEC103_M9 malegenetig00004401_pilon 395486..396877 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7815.t1.stop1Gchil7815.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004401_pilon 395486..395488 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7815.t1.CDS1Gchil7815.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004401_pilon 395486..396877 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7815.t1.exon1Gchil7815.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004401_pilon 395486..396877 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7815.t1.start1Gchil7815.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004401_pilon 396875..396877 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7815.t1Gchil7815.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004401_pilon 395486..396877 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil7815.t1 ID=Gchil7815.t1|Name=Gchil7815.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=464bp
MIRNNKLSYISVDRPWHSFEIQDTFLSSLVTSVFVTLISYQVAAILFSIT
LGLKKRNETKLNTFGIALLTRYLSSPLAVMNSVSRLDWLTRLYYWGDIPS
DTRISRDSARVKFRTSAVLLLLLVATPFTDTFLVGLVLARTNELTFEQAG
FSGIGLGVEEELSVVETIPYLSLCRMARFEERTGDSVRAVFQLCDTPNLA
EGVASNISGLDISLERQTHVYVRVIFRGSAVFGAKWTQLSGVGVEKNLKA
SISKNSVVPLVDLALDRFALHCGERTIIERLGTQQNRTFGGNNVVIASVR
VACNNRTIKEQDGPIYATEIIGMLKQKLTFIKTERTLVRNITDPGDEFTE
EPNGVLLQRTKRNSSMFTLIAVCGALILVRMTLGVLVANDVEDGLERLFL
NRLGIAARSSTVWSAAERISFRRKYQDGDSCQLGMEREEMAEVERFHGGV
VGKSFKDTIEENS*
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spliced messenger RNA

>Gchil7815.t1 ID=Gchil7815.t1|Name=Gchil7815.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1392bp|location=Sequence derived from alignment at tig00004401_pilon:395486..396877- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATTCGCAATAACAAGCTATCTTACATCTCTGTTGACCGACCATGGCA
CTCCTTTGAGATTCAGGATACTTTCCTCAGTTCACTTGTCACATCTGTTT
TCGTTACCCTGATTTCGTACCAAGTTGCAGCAATTCTGTTTAGCATCACC
TTGGGGTTGAAAAAAAGGAACGAGACTAAATTGAACACCTTTGGAATTGC
CCTTCTTACAAGGTATCTCTCCTCCCCACTCGCTGTCATGAACAGTGTTT
CACGGCTGGACTGGCTGACTCGTCTTTATTACTGGGGCGACATTCCCTCC
GATACCCGAATATCACGTGATTCCGCACGCGTGAAGTTTAGAACAAGTGC
TGTTCTGTTGCTTCTTTTGGTTGCCACACCATTCACTGATACATTTCTTG
TGGGGTTAGTACTAGCCAGAACAAATGAATTGACGTTCGAACAGGCCGGT
TTTAGTGGAATTGGGTTAGGTGTAGAGGAAGAATTAAGCGTTGTAGAAAC
TATTCCCTATCTTTCCTTATGCCGTATGGCGAGGTTTGAAGAACGAACTG
GGGATTCTGTGAGAGCTGTGTTTCAGCTGTGTGACACCCCGAACTTAGCC
GAGGGAGTGGCGTCAAATATTTCTGGCCTTGACATATCGCTCGAACGTCA
GACACATGTGTATGTGAGGGTCATATTTCGGGGGTCCGCGGTATTTGGCG
CCAAATGGACACAGCTCAGTGGTGTAGGTGTAGAGAAGAATTTGAAGGCG
TCTATTTCAAAGAACTCTGTGGTGCCATTAGTTGATCTTGCCCTTGACCG
ATTTGCATTGCACTGCGGGGAACGAACCATAATCGAACGTCTTGGAACTC
AGCAAAACAGGACATTCGGGGGAAACAATGTGGTAATTGCTTCTGTTCGC
GTCGCTTGCAATAACAGGACAATAAAAGAACAGGACGGACCGATATACGC
TACTGAAATTATCGGCATGCTGAAACAAAAACTCACGTTCATTAAAACAG
AAAGGACACTTGTTCGAAATATAACGGATCCGGGGGATGAGTTCACAGAA
GAACCAAATGGAGTGCTGCTTCAGAGAACAAAGCGAAACTCTTCAATGTT
CACATTGATAGCGGTTTGTGGTGCTCTCATTCTGGTTCGAATGACATTAG
GGGTGTTGGTTGCCAATGACGTTGAAGATGGACTCGAACGGCTATTTCTA
AATCGGCTCGGAATTGCAGCGCGTAGTTCTACTGTATGGAGTGCCGCGGA
GCGAATAAGTTTTCGAAGGAAGTATCAAGATGGCGATTCGTGTCAGCTCG
GCATGGAACGCGAAGAAATGGCAGAAGTTGAAAGATTTCATGGTGGTGTT
GTTGGGAAAAGTTTCAAAGATACTATAGAAGAGAATTCATAG
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protein sequence of Gchil7815.t1

>Gchil7815.t1 ID=Gchil7815.t1|Name=Gchil7815.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=464bp
MIRNNKLSYISVDRPWHSFEIQDTFLSSLVTSVFVTLISYQVAAILFSIT
LGLKKRNETKLNTFGIALLTRYLSSPLAVMNSVSRLDWLTRLYYWGDIPS
DTRISRDSARVKFRTSAVLLLLLVATPFTDTFLVGLVLARTNELTFEQAG
FSGIGLGVEEELSVVETIPYLSLCRMARFEERTGDSVRAVFQLCDTPNLA
EGVASNISGLDISLERQTHVYVRVIFRGSAVFGAKWTQLSGVGVEKNLKA
SISKNSVVPLVDLALDRFALHCGERTIIERLGTQQNRTFGGNNVVIASVR
VACNNRTIKEQDGPIYATEIIGMLKQKLTFIKTERTLVRNITDPGDEFTE
EPNGVLLQRTKRNSSMFTLIAVCGALILVRMTLGVLVANDVEDGLERLFL
NRLGIAARSSTVWSAAERISFRRKYQDGDSCQLGMEREEMAEVERFHGGV
VGKSFKDTIEENS*
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mRNA from alignment at tig00004401_pilon:395486..396877-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil7815.t1 ID=Gchil7815.t1|Name=Gchil7815.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1392bp|location=Sequence derived from alignment at tig00004401_pilon:395486..396877- (Gracilaria chilensis NLEC103_M9 male)
ATGATTCGCAATAACAAGCTATCTTACATCTCTGTTGACCGACCATGGCA
CTCCTTTGAGATTCAGGATACTTTCCTCAGTTCACTTGTCACATCTGTTT
TCGTTACCCTGATTTCGTACCAAGTTGCAGCAATTCTGTTTAGCATCACC
TTGGGGTTGAAAAAAAGGAACGAGACTAAATTGAACACCTTTGGAATTGC
CCTTCTTACAAGGTATCTCTCCTCCCCACTCGCTGTCATGAACAGTGTTT
CACGGCTGGACTGGCTGACTCGTCTTTATTACTGGGGCGACATTCCCTCC
GATACCCGAATATCACGTGATTCCGCACGCGTGAAGTTTAGAACAAGTGC
TGTTCTGTTGCTTCTTTTGGTTGCCACACCATTCACTGATACATTTCTTG
TGGGGTTAGTACTAGCCAGAACAAATGAATTGACGTTCGAACAGGCCGGT
TTTAGTGGAATTGGGTTAGGTGTAGAGGAAGAATTAAGCGTTGTAGAAAC
TATTCCCTATCTTTCCTTATGCCGTATGGCGAGGTTTGAAGAACGAACTG
GGGATTCTGTGAGAGCTGTGTTTCAGCTGTGTGACACCCCGAACTTAGCC
GAGGGAGTGGCGTCAAATATTTCTGGCCTTGACATATCGCTCGAACGTCA
GACACATGTGTATGTGAGGGTCATATTTCGGGGGTCCGCGGTATTTGGCG
CCAAATGGACACAGCTCAGTGGTGTAGGTGTAGAGAAGAATTTGAAGGCG
TCTATTTCAAAGAACTCTGTGGTGCCATTAGTTGATCTTGCCCTTGACCG
ATTTGCATTGCACTGCGGGGAACGAACCATAATCGAACGTCTTGGAACTC
AGCAAAACAGGACATTCGGGGGAAACAATGTGGTAATTGCTTCTGTTCGC
GTCGCTTGCAATAACAGGACAATAAAAGAACAGGACGGACCGATATACGC
TACTGAAATTATCGGCATGCTGAAACAAAAACTCACGTTCATTAAAACAG
AAAGGACACTTGTTCGAAATATAACGGATCCGGGGGATGAGTTCACAGAA
GAACCAAATGGAGTGCTGCTTCAGAGAACAAAGCGAAACTCTTCAATGTT
CACATTGATAGCGGTTTGTGGTGCTCTCATTCTGGTTCGAATGACATTAG
GGGTGTTGGTTGCCAATGACGTTGAAGATGGACTCGAACGGCTATTTCTA
AATCGGCTCGGAATTGCAGCGCGTAGTTCTACTGTATGGAGTGCCGCGGA
GCGAATAAGTTTTCGAAGGAAGTATCAAGATGGCGATTCGTGTCAGCTCG
GCATGGAACGCGAAGAAATGGCAGAAGTTGAAAGATTTCATGGTGGTGTT
GTTGGGAAAAGTTTCAAAGATACTATAGAAGAGAATTCATAG
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Coding sequence (CDS) from alignment at tig00004401_pilon:395486..396877-

>Gchil7815.t1 ID=Gchil7815.t1|Name=Gchil7815.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1392bp|location=Sequence derived from alignment at tig00004401_pilon:395486..396877- (Gracilaria chilensis NLEC103_M9 male)
ATGATTCGCAATAACAAGCTATCTTACATCTCTGTTGACCGACCATGGCA
CTCCTTTGAGATTCAGGATACTTTCCTCAGTTCACTTGTCACATCTGTTT
TCGTTACCCTGATTTCGTACCAAGTTGCAGCAATTCTGTTTAGCATCACC
TTGGGGTTGAAAAAAAGGAACGAGACTAAATTGAACACCTTTGGAATTGC
CCTTCTTACAAGGTATCTCTCCTCCCCACTCGCTGTCATGAACAGTGTTT
CACGGCTGGACTGGCTGACTCGTCTTTATTACTGGGGCGACATTCCCTCC
GATACCCGAATATCACGTGATTCCGCACGCGTGAAGTTTAGAACAAGTGC
TGTTCTGTTGCTTCTTTTGGTTGCCACACCATTCACTGATACATTTCTTG
TGGGGTTAGTACTAGCCAGAACAAATGAATTGACGTTCGAACAGGCCGGT
TTTAGTGGAATTGGGTTAGGTGTAGAGGAAGAATTAAGCGTTGTAGAAAC
TATTCCCTATCTTTCCTTATGCCGTATGGCGAGGTTTGAAGAACGAACTG
GGGATTCTGTGAGAGCTGTGTTTCAGCTGTGTGACACCCCGAACTTAGCC
GAGGGAGTGGCGTCAAATATTTCTGGCCTTGACATATCGCTCGAACGTCA
GACACATGTGTATGTGAGGGTCATATTTCGGGGGTCCGCGGTATTTGGCG
CCAAATGGACACAGCTCAGTGGTGTAGGTGTAGAGAAGAATTTGAAGGCG
TCTATTTCAAAGAACTCTGTGGTGCCATTAGTTGATCTTGCCCTTGACCG
ATTTGCATTGCACTGCGGGGAACGAACCATAATCGAACGTCTTGGAACTC
AGCAAAACAGGACATTCGGGGGAAACAATGTGGTAATTGCTTCTGTTCGC
GTCGCTTGCAATAACAGGACAATAAAAGAACAGGACGGACCGATATACGC
TACTGAAATTATCGGCATGCTGAAACAAAAACTCACGTTCATTAAAACAG
AAAGGACACTTGTTCGAAATATAACGGATCCGGGGGATGAGTTCACAGAA
GAACCAAATGGAGTGCTGCTTCAGAGAACAAAGCGAAACTCTTCAATGTT
CACATTGATAGCGGTTTGTGGTGCTCTCATTCTGGTTCGAATGACATTAG
GGGTGTTGGTTGCCAATGACGTTGAAGATGGACTCGAACGGCTATTTCTA
AATCGGCTCGGAATTGCAGCGCGTAGTTCTACTGTATGGAGTGCCGCGGA
GCGAATAAGTTTTCGAAGGAAGTATCAAGATGGCGATTCGTGTCAGCTCG
GCATGGAACGCGAAGAAATGGCAGAAGTTGAAAGATTTCATGGTGGTGTT
GTTGGGAAAAGTTTCAAAGATACTATAGAAGAGAATTCATAG
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