Gchil7814.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil7814.t1
Unique NameGchil7814.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length454
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004401_piloncontigtig00004401_pilon:356903..358264 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2880.D7FU28
PFAMsKringle,LPMO_10,WSC
Max annot lvl2759|Eukaryota
KEGG koko:K01315
KEGG Pathwayko04080,ko04610,ko05150,ko05164,map04080,map04610,map05150,map05164
Evalue1.15e-15
EggNOG OGsKOG4157@1|root,KOG4157@2759|Eukaryota
EC3.4.21.7
Descriptionprotein xylosyltransferase activity
COG categoryU
BRITEko00000,ko00001,ko01000,ko01002,ko04147,ko04516
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7814Gchil7814Gracilaria chilensis NLEC103_M9 malegenetig00004401_pilon 356903..358264 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7814.t1.stop1Gchil7814.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004401_pilon 356903..356905 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7814.t1.CDS1Gchil7814.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004401_pilon 356903..358264 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7814.t1.exon1Gchil7814.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004401_pilon 356903..358264 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7814.t1.start1Gchil7814.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004401_pilon 358262..358264 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7814.t1Gchil7814.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004401_pilon 356903..358264 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil7814.t1 ID=Gchil7814.t1|Name=Gchil7814.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=454bp
MCAPSLVVFACVLVYVLPVVYSHGIMVLPRQRGALPQSRYVPITLDSNAP
KDHYPHFPAGRKSDTPGAGKLSQEKAAGSRGWYPYNPYDPNFTFRAGVCG
DTVNGEQEHLLGGKFYNNAKIVAQYRQGDTIGIGHSIVSHHNGFIEVHLC
DVTKCSGGDISKQCFLSGACVQLYRAPNEACDSGTSMACGPIDRNYPGRW
YLPCSNPNSPLGYDAYPPEYATFQLPPDVFCEHCVLQWYWVTANRCNPPG
VLDYFDGPDRPDWQQCAGQGGARGGVTRNKKPCGGTQYFAEEYYQCADIQ
IMPLSGARSGAPLAVSVQDLEPSASPSPSLLQQVDENDDINDARMSQYGD
GIFDQLLLWADNNTSRALQHDSVVDVSEYERVGIEATMSAPVDQVEFFVD
DELVYTASSAPYFIFRSSDSIPAYWDDIPVNRPLTIATMANGEVAQMTVT
FVR*
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spliced messenger RNA

>Gchil7814.t1 ID=Gchil7814.t1|Name=Gchil7814.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1362bp|location=Sequence derived from alignment at tig00004401_pilon:356903..358264- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGTGCTCCCAGTTTGGTTGTCTTCGCGTGTGTGTTGGTGTATGTGCT
GCCCGTGGTGTACTCGCATGGCATCATGGTACTTCCGCGTCAGCGCGGCG
CGTTGCCACAATCGCGATATGTGCCAATCACGTTGGATTCCAACGCACCC
AAAGATCATTACCCTCACTTCCCGGCCGGAAGAAAGAGCGATACTCCGGG
CGCCGGTAAGCTATCGCAGGAGAAAGCAGCCGGATCTCGCGGCTGGTACC
CATACAATCCGTACGATCCCAACTTCACCTTTCGTGCCGGCGTGTGTGGA
GACACGGTGAACGGAGAACAGGAACATTTGTTGGGTGGAAAATTCTACAA
CAACGCCAAAATCGTTGCCCAATACCGTCAGGGAGATACCATTGGCATTG
GACATTCCATTGTTTCCCATCATAATGGCTTCATTGAGGTTCATTTGTGT
GATGTTACCAAATGTTCTGGTGGAGATATCTCTAAGCAATGTTTCCTGTC
CGGTGCTTGTGTCCAATTGTACCGTGCGCCAAACGAGGCATGCGACTCGG
GTACGTCCATGGCATGTGGTCCAATCGATCGAAACTATCCTGGACGTTGG
TATTTGCCTTGTTCTAATCCTAACTCGCCCCTTGGATACGACGCTTACCC
ACCGGAATATGCCACGTTCCAACTGCCGCCGGACGTTTTCTGCGAACATT
GTGTGCTGCAATGGTACTGGGTAACTGCCAATCGTTGCAACCCGCCCGGA
GTGCTTGACTACTTTGATGGTCCGGACCGTCCTGACTGGCAGCAATGTGC
CGGGCAAGGAGGAGCTCGAGGCGGCGTCACACGCAACAAAAAACCGTGCG
GCGGCACACAGTACTTTGCCGAAGAGTATTATCAATGCGCCGACATTCAG
ATCATGCCGCTCAGTGGAGCACGATCCGGTGCGCCACTCGCAGTGTCGGT
GCAAGATTTGGAACCATCTGCATCACCCTCTCCGTCACTGCTGCAACAAG
TGGACGAGAATGATGATATAAACGATGCTCGTATGTCTCAGTATGGCGAC
GGAATTTTCGATCAGCTGTTACTCTGGGCGGATAACAATACCAGTCGCGC
GTTGCAACACGACTCTGTGGTGGATGTAAGTGAGTATGAGCGCGTGGGAA
TCGAGGCTACGATGAGTGCGCCGGTGGATCAGGTGGAGTTTTTCGTGGAC
GACGAGCTTGTGTATACTGCATCGTCTGCGCCGTACTTTATCTTCCGCTC
GTCGGATTCGATTCCGGCGTATTGGGATGACATTCCTGTCAACCGACCGC
TGACGATTGCAACGATGGCCAACGGAGAAGTGGCGCAGATGACGGTGACA
TTTGTGAGGTAG
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protein sequence of Gchil7814.t1

>Gchil7814.t1 ID=Gchil7814.t1|Name=Gchil7814.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=454bp
MCAPSLVVFACVLVYVLPVVYSHGIMVLPRQRGALPQSRYVPITLDSNAP
KDHYPHFPAGRKSDTPGAGKLSQEKAAGSRGWYPYNPYDPNFTFRAGVCG
DTVNGEQEHLLGGKFYNNAKIVAQYRQGDTIGIGHSIVSHHNGFIEVHLC
DVTKCSGGDISKQCFLSGACVQLYRAPNEACDSGTSMACGPIDRNYPGRW
YLPCSNPNSPLGYDAYPPEYATFQLPPDVFCEHCVLQWYWVTANRCNPPG
VLDYFDGPDRPDWQQCAGQGGARGGVTRNKKPCGGTQYFAEEYYQCADIQ
IMPLSGARSGAPLAVSVQDLEPSASPSPSLLQQVDENDDINDARMSQYGD
GIFDQLLLWADNNTSRALQHDSVVDVSEYERVGIEATMSAPVDQVEFFVD
DELVYTASSAPYFIFRSSDSIPAYWDDIPVNRPLTIATMANGEVAQMTVT
FVR*
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mRNA from alignment at tig00004401_pilon:356903..358264-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil7814.t1 ID=Gchil7814.t1|Name=Gchil7814.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1362bp|location=Sequence derived from alignment at tig00004401_pilon:356903..358264- (Gracilaria chilensis NLEC103_M9 male)
ATGTGTGCTCCCAGTTTGGTTGTCTTCGCGTGTGTGTTGGTGTATGTGCT
GCCCGTGGTGTACTCGCATGGCATCATGGTACTTCCGCGTCAGCGCGGCG
CGTTGCCACAATCGCGATATGTGCCAATCACGTTGGATTCCAACGCACCC
AAAGATCATTACCCTCACTTCCCGGCCGGAAGAAAGAGCGATACTCCGGG
CGCCGGTAAGCTATCGCAGGAGAAAGCAGCCGGATCTCGCGGCTGGTACC
CATACAATCCGTACGATCCCAACTTCACCTTTCGTGCCGGCGTGTGTGGA
GACACGGTGAACGGAGAACAGGAACATTTGTTGGGTGGAAAATTCTACAA
CAACGCCAAAATCGTTGCCCAATACCGTCAGGGAGATACCATTGGCATTG
GACATTCCATTGTTTCCCATCATAATGGCTTCATTGAGGTTCATTTGTGT
GATGTTACCAAATGTTCTGGTGGAGATATCTCTAAGCAATGTTTCCTGTC
CGGTGCTTGTGTCCAATTGTACCGTGCGCCAAACGAGGCATGCGACTCGG
GTACGTCCATGGCATGTGGTCCAATCGATCGAAACTATCCTGGACGTTGG
TATTTGCCTTGTTCTAATCCTAACTCGCCCCTTGGATACGACGCTTACCC
ACCGGAATATGCCACGTTCCAACTGCCGCCGGACGTTTTCTGCGAACATT
GTGTGCTGCAATGGTACTGGGTAACTGCCAATCGTTGCAACCCGCCCGGA
GTGCTTGACTACTTTGATGGTCCGGACCGTCCTGACTGGCAGCAATGTGC
CGGGCAAGGAGGAGCTCGAGGCGGCGTCACACGCAACAAAAAACCGTGCG
GCGGCACACAGTACTTTGCCGAAGAGTATTATCAATGCGCCGACATTCAG
ATCATGCCGCTCAGTGGAGCACGATCCGGTGCGCCACTCGCAGTGTCGGT
GCAAGATTTGGAACCATCTGCATCACCCTCTCCGTCACTGCTGCAACAAG
TGGACGAGAATGATGATATAAACGATGCTCGTATGTCTCAGTATGGCGAC
GGAATTTTCGATCAGCTGTTACTCTGGGCGGATAACAATACCAGTCGCGC
GTTGCAACACGACTCTGTGGTGGATGTAAGTGAGTATGAGCGCGTGGGAA
TCGAGGCTACGATGAGTGCGCCGGTGGATCAGGTGGAGTTTTTCGTGGAC
GACGAGCTTGTGTATACTGCATCGTCTGCGCCGTACTTTATCTTCCGCTC
GTCGGATTCGATTCCGGCGTATTGGGATGACATTCCTGTCAACCGACCGC
TGACGATTGCAACGATGGCCAACGGAGAAGTGGCGCAGATGACGGTGACA
TTTGTGAGGTAG
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Coding sequence (CDS) from alignment at tig00004401_pilon:356903..358264-

>Gchil7814.t1 ID=Gchil7814.t1|Name=Gchil7814.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1362bp|location=Sequence derived from alignment at tig00004401_pilon:356903..358264- (Gracilaria chilensis NLEC103_M9 male)
ATGTGTGCTCCCAGTTTGGTTGTCTTCGCGTGTGTGTTGGTGTATGTGCT
GCCCGTGGTGTACTCGCATGGCATCATGGTACTTCCGCGTCAGCGCGGCG
CGTTGCCACAATCGCGATATGTGCCAATCACGTTGGATTCCAACGCACCC
AAAGATCATTACCCTCACTTCCCGGCCGGAAGAAAGAGCGATACTCCGGG
CGCCGGTAAGCTATCGCAGGAGAAAGCAGCCGGATCTCGCGGCTGGTACC
CATACAATCCGTACGATCCCAACTTCACCTTTCGTGCCGGCGTGTGTGGA
GACACGGTGAACGGAGAACAGGAACATTTGTTGGGTGGAAAATTCTACAA
CAACGCCAAAATCGTTGCCCAATACCGTCAGGGAGATACCATTGGCATTG
GACATTCCATTGTTTCCCATCATAATGGCTTCATTGAGGTTCATTTGTGT
GATGTTACCAAATGTTCTGGTGGAGATATCTCTAAGCAATGTTTCCTGTC
CGGTGCTTGTGTCCAATTGTACCGTGCGCCAAACGAGGCATGCGACTCGG
GTACGTCCATGGCATGTGGTCCAATCGATCGAAACTATCCTGGACGTTGG
TATTTGCCTTGTTCTAATCCTAACTCGCCCCTTGGATACGACGCTTACCC
ACCGGAATATGCCACGTTCCAACTGCCGCCGGACGTTTTCTGCGAACATT
GTGTGCTGCAATGGTACTGGGTAACTGCCAATCGTTGCAACCCGCCCGGA
GTGCTTGACTACTTTGATGGTCCGGACCGTCCTGACTGGCAGCAATGTGC
CGGGCAAGGAGGAGCTCGAGGCGGCGTCACACGCAACAAAAAACCGTGCG
GCGGCACACAGTACTTTGCCGAAGAGTATTATCAATGCGCCGACATTCAG
ATCATGCCGCTCAGTGGAGCACGATCCGGTGCGCCACTCGCAGTGTCGGT
GCAAGATTTGGAACCATCTGCATCACCCTCTCCGTCACTGCTGCAACAAG
TGGACGAGAATGATGATATAAACGATGCTCGTATGTCTCAGTATGGCGAC
GGAATTTTCGATCAGCTGTTACTCTGGGCGGATAACAATACCAGTCGCGC
GTTGCAACACGACTCTGTGGTGGATGTAAGTGAGTATGAGCGCGTGGGAA
TCGAGGCTACGATGAGTGCGCCGGTGGATCAGGTGGAGTTTTTCGTGGAC
GACGAGCTTGTGTATACTGCATCGTCTGCGCCGTACTTTATCTTCCGCTC
GTCGGATTCGATTCCGGCGTATTGGGATGACATTCCTGTCAACCGACCGC
TGACGATTGCAACGATGGCCAACGGAGAAGTGGCGCAGATGACGGTGACA
TTTGTGAGGTAG
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