Gchil7803.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil7803.t1
Unique NameGchil7803.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length137
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004401_piloncontigtig00004401_pilon:53866..54396 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7803Gchil7803Gracilaria chilensis NLEC103_M9 malegenetig00004401_pilon 53866..54396 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7803.t1Gchil7803.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004401_pilon 53866..54396 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7803.t1.start1Gchil7803.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004401_pilon 53866..53868 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7803.t1.CDS1Gchil7803.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004401_pilon 53866..54012 +
Gchil7803.t1.CDS2Gchil7803.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004401_pilon 54133..54396 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7803.t1.exon1Gchil7803.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004401_pilon 53866..54012 +
Gchil7803.t1.exon2Gchil7803.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004401_pilon 54133..54396 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7803.t1.intron1Gchil7803.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004401_pilon 54013..54132 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7803.t1.stop1Gchil7803.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004401_pilon 54394..54396 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil7803.t1 ID=Gchil7803.t1|Name=Gchil7803.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=137bp
MPETQPAAYHVNLETFFHMQELKVLGFVAGAPRERSLSQARLPARHAQKT
KKIFWNAKAALLDTLPLLALLQLTNAIHVQLEQLLMDTMNVMNVHLEVSV
VKQCRRDVHNVRLVPHLKKSLDQQNVFHVHQGNTED*
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spliced messenger RNA

>Gchil7803.t1 ID=Gchil7803.t1|Name=Gchil7803.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=411bp|location=Sequence derived from alignment at tig00004401_pilon:53866..54396+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCAGAAACGCAACCAGCTGCATACCATGTGAACCTGGAAACTTTCTT
TCATATGCAGGAGCTCAAAGTGCTGGGGTTTGTAGCAGGTGCCCCGCGGG
AACGTTCTCTCTCGCAGGCTCGTCTTCCTGCTCGCCATGCGCAGAAGACG
AAGAAAATCTTCTGGAATGCAAAAGCTGCCCTCCTGGACACTCTGCCCCT
CCTGGCGCTACTTCAGTTGACCAATGCAATCCATGTCCAGCTGGAACAGC
TTCTGATGGATACAATGAATGTCATGAATGTGCACCTGGAAGTTTCAGTG
GTCAAACAATGTCGTCGGGATGTACACAATGTCCGGTTGGTTCCACATCT
GAAAAAGAGTTTGGATCAACAAAATGTATTCCATGTCCACCAGGGCAATA
CGGAAGACTAG
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protein sequence of Gchil7803.t1

>Gchil7803.t1 ID=Gchil7803.t1|Name=Gchil7803.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=137bp
MPETQPAAYHVNLETFFHMQELKVLGFVAGAPRERSLSQARLPARHAQKT
KKIFWNAKAALLDTLPLLALLQLTNAIHVQLEQLLMDTMNVMNVHLEVSV
VKQCRRDVHNVRLVPHLKKSLDQQNVFHVHQGNTED*
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mRNA from alignment at tig00004401_pilon:53866..54396+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil7803.t1 ID=Gchil7803.t1|Name=Gchil7803.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=531bp|location=Sequence derived from alignment at tig00004401_pilon:53866..54396+ (Gracilaria chilensis NLEC103_M9 male)
ATGCCAGAAACGCAACCAGCTGCATACCATGTGAACCTGGAAACTTTCTT
TCATATGCAGGAGCTCAAAGTGCTGGGGTTTGTAGCAGGTGCCCCGCGGG
AACGTTCTCTCTCGCAGGCTCGTCTTCCTGCTCGCCATGCGCAGAAGGTA
CGTTTTCTTCGGAGAGTTCTCCACGCTGTGTAACATGTCCTAAGGGAACA
TTTGTGGCAACTTCTGGGTTTGATATGAATCTTGAGGGCTGTGAAACCTG
CTACTCTGGTTATGCAGACGAAGAAAATCTTCTGGAATGCAAAAGCTGCC
CTCCTGGACACTCTGCCCCTCCTGGCGCTACTTCAGTTGACCAATGCAAT
CCATGTCCAGCTGGAACAGCTTCTGATGGATACAATGAATGTCATGAATG
TGCACCTGGAAGTTTCAGTGGTCAAACAATGTCGTCGGGATGTACACAAT
GTCCGGTTGGTTCCACATCTGAAAAAGAGTTTGGATCAACAAAATGTATT
CCATGTCCACCAGGGCAATACGGAAGACTAG
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Coding sequence (CDS) from alignment at tig00004401_pilon:53866..54396+

>Gchil7803.t1 ID=Gchil7803.t1|Name=Gchil7803.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=411bp|location=Sequence derived from alignment at tig00004401_pilon:53866..54396+ (Gracilaria chilensis NLEC103_M9 male)
ATGCCAGAAACGCAACCAGCTGCATACCATGTGAACCTGGAAACTTTCTT
TCATATGCAGGAGCTCAAAGTGCTGGGGTTTGTAGCAGGTGCCCCGCGGG
AACGTTCTCTCTCGCAGGCTCGTCTTCCTGCTCGCCATGCGCAGAAGACG
AAGAAAATCTTCTGGAATGCAAAAGCTGCCCTCCTGGACACTCTGCCCCT
CCTGGCGCTACTTCAGTTGACCAATGCAATCCATGTCCAGCTGGAACAGC
TTCTGATGGATACAATGAATGTCATGAATGTGCACCTGGAAGTTTCAGTG
GTCAAACAATGTCGTCGGGATGTACACAATGTCCGGTTGGTTCCACATCT
GAAAAAGAGTTTGGATCAACAAAATGTATTCCATGTCCACCAGGGCAATA
CGGAAGACTAG
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