Gchil7778.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil7778.t1
Unique NameGchil7778.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length234
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00025321_piloncontigtig00025321_pilon:1584433..1585134 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1137268.AZXF01000015_gene771
PFAMsAhpC-TSA,Redoxin
Max annot lvl201174|Actinobacteria
Evalue6.85e-50
EggNOG OGsCOG1225@1|root,COG1225@2|Bacteria,2H4Y3@201174|Actinobacteria
DescriptionAlkyl hydroperoxide reductase
COG categoryO
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7778Gchil7778Gracilaria chilensis NLEC103_M9 malegenetig00025321_pilon 1584433..1585134 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7778.t1.start1Gchil7778.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00025321_pilon 1584433..1584435 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7778.t1.CDS1Gchil7778.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00025321_pilon 1584433..1585134 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7778.t1.exon1Gchil7778.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00025321_pilon 1584433..1585134 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7778.t1.stop1Gchil7778.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00025321_pilon 1585132..1585134 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7778.t1Gchil7778.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00025321_pilon 1584433..1585134 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil7778.t1 ID=Gchil7778.t1|Name=Gchil7778.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=234bp
MALVSLRPLSPLPPLAPVLDAKKKHLFETLPAHILAELERTSAELERIFT
PTPLQVNDIAPLFTLDDALGNPVSLTDLLDTHTAVVLTWYRGVWCPYCNA
TLDSLILAHDHIEALGAKLVTISAQTPDESREMIEEMELPFHVLSDDALN
VAEKYGIAYTVPDGMKNVYNDFGVDLEVINGNEQKRKPRLPVPATFVLDR
SGRIRFAHTDMDYTTRAEPQDIVEAIQAIAESS*
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spliced messenger RNA

>Gchil7778.t1 ID=Gchil7778.t1|Name=Gchil7778.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=702bp|location=Sequence derived from alignment at tig00025321_pilon:1584433..1585134+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCCTCGTCAGTCTTCGCCCTCTTTCCCCCTTGCCGCCGCTGGCTCC
AGTTCTGGATGCCAAAAAGAAGCACCTGTTCGAGACTCTGCCAGCTCACA
TTCTCGCCGAGCTTGAGAGAACTTCCGCTGAGTTGGAAAGGATATTCACT
CCGACTCCGCTTCAAGTGAATGATATTGCGCCCCTATTCACGCTCGACGA
CGCGTTGGGTAATCCTGTCAGTCTCACAGACCTGCTCGACACGCACACCG
CCGTCGTCCTCACCTGGTATCGAGGCGTCTGGTGCCCTTATTGCAACGCA
ACTCTAGACTCGCTCATCCTGGCACACGACCACATCGAAGCGCTTGGTGC
CAAGCTTGTCACAATATCAGCCCAGACTCCAGACGAAAGCCGCGAAATGA
TTGAAGAAATGGAACTTCCGTTTCATGTCTTGAGCGATGATGCGCTCAAC
GTTGCTGAAAAGTATGGCATCGCGTACACAGTACCCGATGGAATGAAGAA
CGTGTACAACGACTTTGGCGTGGATTTGGAAGTCATCAACGGAAATGAAC
AAAAGCGGAAACCCAGACTGCCCGTTCCAGCCACTTTTGTACTTGATAGG
AGCGGGAGAATTCGGTTTGCGCACACAGATATGGATTACACTACTCGCGC
AGAACCGCAAGATATTGTGGAAGCCATTCAGGCCATTGCCGAGTCTTCAT
AA
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protein sequence of Gchil7778.t1

>Gchil7778.t1 ID=Gchil7778.t1|Name=Gchil7778.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=234bp
MALVSLRPLSPLPPLAPVLDAKKKHLFETLPAHILAELERTSAELERIFT
PTPLQVNDIAPLFTLDDALGNPVSLTDLLDTHTAVVLTWYRGVWCPYCNA
TLDSLILAHDHIEALGAKLVTISAQTPDESREMIEEMELPFHVLSDDALN
VAEKYGIAYTVPDGMKNVYNDFGVDLEVINGNEQKRKPRLPVPATFVLDR
SGRIRFAHTDMDYTTRAEPQDIVEAIQAIAESS*
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mRNA from alignment at tig00025321_pilon:1584433..1585134+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil7778.t1 ID=Gchil7778.t1|Name=Gchil7778.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=702bp|location=Sequence derived from alignment at tig00025321_pilon:1584433..1585134+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCCCTCGTCAGTCTTCGCCCTCTTTCCCCCTTGCCGCCGCTGGCTCC
AGTTCTGGATGCCAAAAAGAAGCACCTGTTCGAGACTCTGCCAGCTCACA
TTCTCGCCGAGCTTGAGAGAACTTCCGCTGAGTTGGAAAGGATATTCACT
CCGACTCCGCTTCAAGTGAATGATATTGCGCCCCTATTCACGCTCGACGA
CGCGTTGGGTAATCCTGTCAGTCTCACAGACCTGCTCGACACGCACACCG
CCGTCGTCCTCACCTGGTATCGAGGCGTCTGGTGCCCTTATTGCAACGCA
ACTCTAGACTCGCTCATCCTGGCACACGACCACATCGAAGCGCTTGGTGC
CAAGCTTGTCACAATATCAGCCCAGACTCCAGACGAAAGCCGCGAAATGA
TTGAAGAAATGGAACTTCCGTTTCATGTCTTGAGCGATGATGCGCTCAAC
GTTGCTGAAAAGTATGGCATCGCGTACACAGTACCCGATGGAATGAAGAA
CGTGTACAACGACTTTGGCGTGGATTTGGAAGTCATCAACGGAAATGAAC
AAAAGCGGAAACCCAGACTGCCCGTTCCAGCCACTTTTGTACTTGATAGG
AGCGGGAGAATTCGGTTTGCGCACACAGATATGGATTACACTACTCGCGC
AGAACCGCAAGATATTGTGGAAGCCATTCAGGCCATTGCCGAGTCTTCAT
AA
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Coding sequence (CDS) from alignment at tig00025321_pilon:1584433..1585134+

>Gchil7778.t1 ID=Gchil7778.t1|Name=Gchil7778.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=702bp|location=Sequence derived from alignment at tig00025321_pilon:1584433..1585134+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCCCTCGTCAGTCTTCGCCCTCTTTCCCCCTTGCCGCCGCTGGCTCC
AGTTCTGGATGCCAAAAAGAAGCACCTGTTCGAGACTCTGCCAGCTCACA
TTCTCGCCGAGCTTGAGAGAACTTCCGCTGAGTTGGAAAGGATATTCACT
CCGACTCCGCTTCAAGTGAATGATATTGCGCCCCTATTCACGCTCGACGA
CGCGTTGGGTAATCCTGTCAGTCTCACAGACCTGCTCGACACGCACACCG
CCGTCGTCCTCACCTGGTATCGAGGCGTCTGGTGCCCTTATTGCAACGCA
ACTCTAGACTCGCTCATCCTGGCACACGACCACATCGAAGCGCTTGGTGC
CAAGCTTGTCACAATATCAGCCCAGACTCCAGACGAAAGCCGCGAAATGA
TTGAAGAAATGGAACTTCCGTTTCATGTCTTGAGCGATGATGCGCTCAAC
GTTGCTGAAAAGTATGGCATCGCGTACACAGTACCCGATGGAATGAAGAA
CGTGTACAACGACTTTGGCGTGGATTTGGAAGTCATCAACGGAAATGAAC
AAAAGCGGAAACCCAGACTGCCCGTTCCAGCCACTTTTGTACTTGATAGG
AGCGGGAGAATTCGGTTTGCGCACACAGATATGGATTACACTACTCGCGC
AGAACCGCAAGATATTGTGGAAGCCATTCAGGCCATTGCCGAGTCTTCAT
AA
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