Gchil7772.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil7772.t1
Unique Name	Gchil7772.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	534

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00025321_pilon	contig	tig00025321_pilon:1411912..1413513 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1185652.USDA257_c10950
Preferred name	MA20_01285
PFAMs	GMC_oxred_C,GMC_oxred_N
Max annot lvl	28211\|Alphaproteobacteria
KEGG rclass	RC00087
KEGG ko	ko:K00108
KEGG Reaction	R01025
KEGG Pathway	ko00260,ko01100,map00260,map01100
KEGG Module	M00555
Evalue	4.72e-37
EggNOG OGs	COG2303@1\|root,COG2303@2\|Bacteria,1MV19@1224\|Proteobacteria,2TQKQ@28211\|Alphaproteobacteria,4B7MC@82115\|Rhizobiaceae
EC	1.1.99.1
Description	Belongs to the GMC oxidoreductase family
COG category	E
BRITE	ko00000,ko00001,ko00002,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil7772	Gchil7772	Gracilaria chilensis NLEC103_M9 male	gene	tig00025321_pilon 1411912..1413513 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7772.t1.start1	Gchil7772.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00025321_pilon 1411912..1411914 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7772.t1.CDS1	Gchil7772.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00025321_pilon 1411912..1413513 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7772.t1.exon1	Gchil7772.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00025321_pilon 1411912..1413513 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7772.t1.stop1	Gchil7772.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00025321_pilon 1413511..1413513 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7772.t1	Gchil7772.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00025321_pilon 1411912..1413513 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00025321_pilon:1411912..1413513+
coding sequence from alignment at tig00025321_pilon:1411912..1413513+

mRNA sequence

>Gchil7772.t1 ID=Gchil7772.t1|Name=Gchil7772.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=534bp
MLFSALLLSFAFALSLACRASLAADTADIVIAGAGTAGCPLAARLCVALP
HKRITLLERAAPRSKQAEFIVRAPRLLFSTWTSPELLETFPSLVNPALNR
SHDVLTGRTLGGTSAITGMQWSVPLNGSIESWGVRGLDTASAAFYFQRAY
RQLSVAPSRQRLRYAQAYVDAAQRAGFHLSQHHLDGVFRSVWHNHLTIDR
NLRRTDACSAYVQPLLTGVCRHNLRLVQNITVTAVKLNRRRGGVLRATGV
KALQTQPDNSTVKRFFVASDETILSAGPYGSAKILQLSGIGLRRVLRAAG
VPLRLSLPVGERTLCSSSIGVSSVYTGVPNEPVNNFSLVNDERQRQLWEQ
GQTSVLGTAVSAANGRVGTDGYFGSSFVPFWPDVPEVYSYCHLNSQSRGF
LRIRDADPFSPPTVQNNIMGNRGEYARIVRCLQSLVAIHNQFPPHFNMSF
TNPERGEITEDWVRRTLNTGAHFVGACPVGDVLDDRLRVRGVQSLRVIDS
SSLRDLPTSAGPMASVVMLAEFMSDLISKLYRD*

spliced messenger RNA

>Gchil7772.t1 ID=Gchil7772.t1|Name=Gchil7772.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1602bp|location=Sequence derived from alignment at tig00025321_pilon:1411912..1413513+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
atgcttttctccgcgctgcttctctccttcgccttcgccctctccctTGC
CTGCCGAGCGTCGCTCGCCGCCGACACCGCCGACATCGTCATCGCCGGCG
CCGGCACCGCGGGCTGTCCGCTTGCGGCCCGTCTGTGCGTCGCGCTTCCA
CACAAGCGAATCACGTTGCTGGAGCGCGCCGCCCCGCGCTCCAAGCAAGC
AGAGTTCATTGTGCGCGCCCCGCGTCTCCTGTTCTCCACCTGGACGTCGC
CTGAGCTGCTGGAGACCTTTCCGTCCCTCGTCAACCCGGCCCTCAATCGA
TCGCATGACGTGCTCACGGGTCGCACCTTGGGAGGCACCTCGGCCATCAC
CGGCATGCAGTGGAGCGTCCCGCTCAACGGCTCCATCGAGAGCTGGGGCG
TGCGCGGTCTTGACACCGCTTCTGCCGCCTTCTACTTCCAGCGCGCCTAC
CGTCAGCTCTCCGTGGCCCCGTCTCGTCAGCGTCTGCGCTACGCACAGGC
CTACGTCGACGCCGCTCAGCGCGCCGGTTTCCATCTGTCACAACATCATC
TAGACGGCGTGTTCCGCTCCGTGTGGCACAACCATCTCACCATCGACCGC
AACCTTCGTCGTACCGACGCGTGTAGCGCGTATGTGCAACCCCTCCTGAC
GGGCGTCTGTCGCCACAACTTGCGTCTCGTGCAGAATATCACCGTCACAG
CCGTCAAACTCAACCGTCGTCGTGGCGGCGTTCTGCGCGCCACCGGAGTA
AAAGCATTGCAGACGCAACCGGATAACTCCACCGTAAAACGCTTCTTTGT
GGCGAGCGATGAGACCATTCTGTCGGCGGGACCGTACGGCAGCGCCAAGA
TTCTGCAGCTGTCTGGCATTGGACTGCGCCGTGTGCTGCGCGCCGCCGGC
GTGCCGCTTCGTTTGTCACTACCGGTGGGTGAGCGCACGCTGTGCAGCTC
TTCTATCGGAGTGTCGTCGGTGTACACCGGAGTGCCCAACGAGCCCGTTA
ACAACTTCTCGCTCGTCAACGATGAGCGTCAGCGTCAACTCTGGGAGCAG
GGACAGACCAGCGTGCTGGGCACCGCCGTGTCCGCTGCCAACGGCCGCGT
TGGAACCGACGGCTACTTTGGCTCCTCCTTCGTGCCGTTCTGGCCAGACG
TGCCAGAAGTCTACTCCTACTGTCATCTCAACTCGCAGTCGCGCGGCTTT
TTACGCATTCGTGACGCCGATCCCTTCTCGCCGCCCACTGTGCAAAATAA
CATCATGGGCAACCGCGGCGAGTACGCCCGCATCGTGCGCTGCCTCCAGT
CGCTCGTCGCCATTCACAACCAGTTCCCGCCGCACTTCAACATGAGCTTC
ACCAACCCGGAGCGCGGAGAAATCACCGAGGACTGGGTGCGTCGCACCTT
GAACACCGGCGCTCACTTTGTCGGTGCTTGCCCCGTTGGAGACGTTCTGG
ACGACCGCCTGCGAGTAAGAGGTGTGCAATCTCTTCGTGTCATTGACTCG
TCTTCGCTGAGAGATTTGCCCACTTCGGCCGGTCCAATGGCTTCGGTCGT
CATGCTTGCAGAGTTCATGTCCGACTTGATTTCCAAGCTCTATCGTGATT
AG

protein sequence of Gchil7772.t1

>Gchil7772.t1 ID=Gchil7772.t1|Name=Gchil7772.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=534bp
MLFSALLLSFAFALSLACRASLAADTADIVIAGAGTAGCPLAARLCVALP
HKRITLLERAAPRSKQAEFIVRAPRLLFSTWTSPELLETFPSLVNPALNR
SHDVLTGRTLGGTSAITGMQWSVPLNGSIESWGVRGLDTASAAFYFQRAY
RQLSVAPSRQRLRYAQAYVDAAQRAGFHLSQHHLDGVFRSVWHNHLTIDR
NLRRTDACSAYVQPLLTGVCRHNLRLVQNITVTAVKLNRRRGGVLRATGV
KALQTQPDNSTVKRFFVASDETILSAGPYGSAKILQLSGIGLRRVLRAAG
VPLRLSLPVGERTLCSSSIGVSSVYTGVPNEPVNNFSLVNDERQRQLWEQ
GQTSVLGTAVSAANGRVGTDGYFGSSFVPFWPDVPEVYSYCHLNSQSRGF
LRIRDADPFSPPTVQNNIMGNRGEYARIVRCLQSLVAIHNQFPPHFNMSF
TNPERGEITEDWVRRTLNTGAHFVGACPVGDVLDDRLRVRGVQSLRVIDS
SSLRDLPTSAGPMASVVMLAEFMSDLISKLYRD*

mRNA from alignment at tig00025321_pilon:1411912..1413513+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil7772.t1 ID=Gchil7772.t1|Name=Gchil7772.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1602bp|location=Sequence derived from alignment at tig00025321_pilon:1411912..1413513+ (Gracilaria chilensis NLEC103_M9 male)
atgcttttctccgcgctgcttctctccttcgccttcgccctctccctTGC
CTGCCGAGCGTCGCTCGCCGCCGACACCGCCGACATCGTCATCGCCGGCG
CCGGCACCGCGGGCTGTCCGCTTGCGGCCCGTCTGTGCGTCGCGCTTCCA
CACAAGCGAATCACGTTGCTGGAGCGCGCCGCCCCGCGCTCCAAGCAAGC
AGAGTTCATTGTGCGCGCCCCGCGTCTCCTGTTCTCCACCTGGACGTCGC
CTGAGCTGCTGGAGACCTTTCCGTCCCTCGTCAACCCGGCCCTCAATCGA
TCGCATGACGTGCTCACGGGTCGCACCTTGGGAGGCACCTCGGCCATCAC
CGGCATGCAGTGGAGCGTCCCGCTCAACGGCTCCATCGAGAGCTGGGGCG
TGCGCGGTCTTGACACCGCTTCTGCCGCCTTCTACTTCCAGCGCGCCTAC
CGTCAGCTCTCCGTGGCCCCGTCTCGTCAGCGTCTGCGCTACGCACAGGC
CTACGTCGACGCCGCTCAGCGCGCCGGTTTCCATCTGTCACAACATCATC
TAGACGGCGTGTTCCGCTCCGTGTGGCACAACCATCTCACCATCGACCGC
AACCTTCGTCGTACCGACGCGTGTAGCGCGTATGTGCAACCCCTCCTGAC
GGGCGTCTGTCGCCACAACTTGCGTCTCGTGCAGAATATCACCGTCACAG
CCGTCAAACTCAACCGTCGTCGTGGCGGCGTTCTGCGCGCCACCGGAGTA
AAAGCATTGCAGACGCAACCGGATAACTCCACCGTAAAACGCTTCTTTGT
GGCGAGCGATGAGACCATTCTGTCGGCGGGACCGTACGGCAGCGCCAAGA
TTCTGCAGCTGTCTGGCATTGGACTGCGCCGTGTGCTGCGCGCCGCCGGC
GTGCCGCTTCGTTTGTCACTACCGGTGGGTGAGCGCACGCTGTGCAGCTC
TTCTATCGGAGTGTCGTCGGTGTACACCGGAGTGCCCAACGAGCCCGTTA
ACAACTTCTCGCTCGTCAACGATGAGCGTCAGCGTCAACTCTGGGAGCAG
GGACAGACCAGCGTGCTGGGCACCGCCGTGTCCGCTGCCAACGGCCGCGT
TGGAACCGACGGCTACTTTGGCTCCTCCTTCGTGCCGTTCTGGCCAGACG
TGCCAGAAGTCTACTCCTACTGTCATCTCAACTCGCAGTCGCGCGGCTTT
TTACGCATTCGTGACGCCGATCCCTTCTCGCCGCCCACTGTGCAAAATAA
CATCATGGGCAACCGCGGCGAGTACGCCCGCATCGTGCGCTGCCTCCAGT
CGCTCGTCGCCATTCACAACCAGTTCCCGCCGCACTTCAACATGAGCTTC
ACCAACCCGGAGCGCGGAGAAATCACCGAGGACTGGGTGCGTCGCACCTT
GAACACCGGCGCTCACTTTGTCGGTGCTTGCCCCGTTGGAGACGTTCTGG
ACGACCGCCTGCGAGTAAGAGGTGTGCAATCTCTTCGTGTCATTGACTCG
TCTTCGCTGAGAGATTTGCCCACTTCGGCCGGTCCAATGGCTTCGGTCGT
CATGCTTGCAGAGTTCATGTCCGACTTGATTTCCAAGCTCTATCGTGATT
AG

Coding sequence (CDS) from alignment at tig00025321_pilon:1411912..1413513+

>Gchil7772.t1 ID=Gchil7772.t1|Name=Gchil7772.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1602bp|location=Sequence derived from alignment at tig00025321_pilon:1411912..1413513+ (Gracilaria chilensis NLEC103_M9 male)
atgcttttctccgcgctgcttctctccttcgccttcgccctctccctTGC
CTGCCGAGCGTCGCTCGCCGCCGACACCGCCGACATCGTCATCGCCGGCG
CCGGCACCGCGGGCTGTCCGCTTGCGGCCCGTCTGTGCGTCGCGCTTCCA
CACAAGCGAATCACGTTGCTGGAGCGCGCCGCCCCGCGCTCCAAGCAAGC
AGAGTTCATTGTGCGCGCCCCGCGTCTCCTGTTCTCCACCTGGACGTCGC
CTGAGCTGCTGGAGACCTTTCCGTCCCTCGTCAACCCGGCCCTCAATCGA
TCGCATGACGTGCTCACGGGTCGCACCTTGGGAGGCACCTCGGCCATCAC
CGGCATGCAGTGGAGCGTCCCGCTCAACGGCTCCATCGAGAGCTGGGGCG
TGCGCGGTCTTGACACCGCTTCTGCCGCCTTCTACTTCCAGCGCGCCTAC
CGTCAGCTCTCCGTGGCCCCGTCTCGTCAGCGTCTGCGCTACGCACAGGC
CTACGTCGACGCCGCTCAGCGCGCCGGTTTCCATCTGTCACAACATCATC
TAGACGGCGTGTTCCGCTCCGTGTGGCACAACCATCTCACCATCGACCGC
AACCTTCGTCGTACCGACGCGTGTAGCGCGTATGTGCAACCCCTCCTGAC
GGGCGTCTGTCGCCACAACTTGCGTCTCGTGCAGAATATCACCGTCACAG
CCGTCAAACTCAACCGTCGTCGTGGCGGCGTTCTGCGCGCCACCGGAGTA
AAAGCATTGCAGACGCAACCGGATAACTCCACCGTAAAACGCTTCTTTGT
GGCGAGCGATGAGACCATTCTGTCGGCGGGACCGTACGGCAGCGCCAAGA
TTCTGCAGCTGTCTGGCATTGGACTGCGCCGTGTGCTGCGCGCCGCCGGC
GTGCCGCTTCGTTTGTCACTACCGGTGGGTGAGCGCACGCTGTGCAGCTC
TTCTATCGGAGTGTCGTCGGTGTACACCGGAGTGCCCAACGAGCCCGTTA
ACAACTTCTCGCTCGTCAACGATGAGCGTCAGCGTCAACTCTGGGAGCAG
GGACAGACCAGCGTGCTGGGCACCGCCGTGTCCGCTGCCAACGGCCGCGT
TGGAACCGACGGCTACTTTGGCTCCTCCTTCGTGCCGTTCTGGCCAGACG
TGCCAGAAGTCTACTCCTACTGTCATCTCAACTCGCAGTCGCGCGGCTTT
TTACGCATTCGTGACGCCGATCCCTTCTCGCCGCCCACTGTGCAAAATAA
CATCATGGGCAACCGCGGCGAGTACGCCCGCATCGTGCGCTGCCTCCAGT
CGCTCGTCGCCATTCACAACCAGTTCCCGCCGCACTTCAACATGAGCTTC
ACCAACCCGGAGCGCGGAGAAATCACCGAGGACTGGGTGCGTCGCACCTT
GAACACCGGCGCTCACTTTGTCGGTGCTTGCCCCGTTGGAGACGTTCTGG
ACGACCGCCTGCGAGTAAGAGGTGTGCAATCTCTTCGTGTCATTGACTCG
TCTTCGCTGAGAGATTTGCCCACTTCGGCCGGTCCAATGGCTTCGGTCGT
CATGCTTGCAGAGTTCATGTCCGACTTGATTTCCAAGCTCTATCGTGATT
AG