Gchil7762.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil7762.t1
Unique NameGchil7762.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length331
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00025321_piloncontigtig00025321_pilon:1239873..1240865 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMI227CT
Preferred nameCYCB
PFAMsCyclin_C,Cyclin_N
Max annot lvl2759|Eukaryota
KEGG koko:K21770,ko:K21777
KEGG TC1.I.1.1.3
KEGG Pathwayko04068,ko04110,ko04114,ko04115,ko04218,ko04914,ko05166,map04068,map04110,map04114,map04115,map04218,map04914,map05166
Evalue2.76e-43
EggNOG OGsCOG5024@1|root,KOG0653@2759|Eukaryota
Descriptioncell division
COG categoryD
BRITEko00000,ko00001,ko03032,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7762Gchil7762Gracilaria chilensis NLEC103_M9 malegenetig00025321_pilon 1239873..1240865 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7762.t1.stop1Gchil7762.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00025321_pilon 1239873..1239875 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7762.t1.CDS1Gchil7762.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00025321_pilon 1239873..1240865 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7762.t1.exon1Gchil7762.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00025321_pilon 1239873..1240865 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7762.t1.start1Gchil7762.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00025321_pilon 1240863..1240865 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7762.t1Gchil7762.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00025321_pilon 1239873..1240865 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil7762.t1 ID=Gchil7762.t1|Name=Gchil7762.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=331bp
MMPKRALGDITNRHANVRNSFPLKRAAKAQKISNNISITKNHHHVLSEKA
PVSQNTFPSKTNTKYIDIDASDKLNRVEGSDLAAVIHKNHLLAEKRHMPS
TNLLESHKTVTRGMRAILVDWIADVCVCLKLKDSSLHLCVHILDRFLHSY
EPTRKTLQLVGSVCLYIAAKYEEIYAPDANDFVTLSDGAFSMDDVVLMEA
TILNALRFEVSTPYCLTFLNRIGKTLEAKGTHNEVAQNVLESAQMFVELA
MVDGRHLKYRPSHLSAAAVLLAMQKLGVNVSWCESLSFHSGWSEGELVRC
VEDVRQLVDEGQRSPRRLNAIRRKFLHKTV*
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spliced messenger RNA

>Gchil7762.t1 ID=Gchil7762.t1|Name=Gchil7762.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=993bp|location=Sequence derived from alignment at tig00025321_pilon:1239873..1240865- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGCCGAAACGCGCTTTGGGGGACATTACCAACCGCCACGCCAATGT
GAGAAACTCATTCCCGCTTAAGCGTGCCGCTAAAGCCCAGAAAATCTCCA
ACAATATCTCTATCACAAAGAACCACCACCATGTACTCTCCGAAAAAGCG
CCAGTATCTCAAAACACGTTTCCATCGAAAACGAATACCAAGTACATCGA
TATTGATGCTTCGGACAAACTGAACCGTGTGGAAGGAAGCGATTTGGCTG
CAGTTATCCACAAGAACCATCTTCTGGCCGAAAAACGACACATGCCCAGC
ACCAACCTCTTGGAGTCCCACAAGACAGTCACAAGAGGAATGAGGGCGAT
TCTAGTTGATTGGATAGCTGATGTATGTGTGTGTCTCAAGTTGAAGGACA
GCTCCCTCCACTTATGTGTTCACATTCTGGATCGTTTCCTTCATAGTTAC
GAACCTACCCGAAAGACTCTTCAATTGGTCGGCAGTGTGTGCCTTTACAT
TGCTGCAAAGTACGAAGAGATCTACGCTCCAGATGCCAATGATTTTGTCA
CCCTGTCGGACGGTGCTTTCAGCATGGACGACGTGGTTCTCATGGAGGCA
ACCATCTTGAATGCTCTACGATTCGAGGTGAGCACTCCGTACTGCTTGAC
GTTCTTGAACCGCATTGGAAAGACACTCGAAGCAAAAGGCACGCACAATG
AGGTGGCACAGAACGTGTTGGAAAGCGCGCAAATGTTTGTAGAGTTGGCC
ATGGTGGATGGGCGTCATTTGAAATATCGACCAAGCCATCTCTCCGCTGC
TGCAGTGCTCCTCGCGATGCAAAAGCTTGGTGTCAACGTGAGCTGGTGCG
AAAGCCTCTCTTTCCACTCAGGTTGGAGCGAAGGCGAACTTGTTCGCTGC
GTTGAAGACGTTCGGCAGCTGGTTGATGAGGGCCAAAGATCACCACGGCG
TTTGAACGCCATTCGTAGAAAATTCTTGCACAAAACAGTCTGA
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protein sequence of Gchil7762.t1

>Gchil7762.t1 ID=Gchil7762.t1|Name=Gchil7762.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=331bp
MMPKRALGDITNRHANVRNSFPLKRAAKAQKISNNISITKNHHHVLSEKA
PVSQNTFPSKTNTKYIDIDASDKLNRVEGSDLAAVIHKNHLLAEKRHMPS
TNLLESHKTVTRGMRAILVDWIADVCVCLKLKDSSLHLCVHILDRFLHSY
EPTRKTLQLVGSVCLYIAAKYEEIYAPDANDFVTLSDGAFSMDDVVLMEA
TILNALRFEVSTPYCLTFLNRIGKTLEAKGTHNEVAQNVLESAQMFVELA
MVDGRHLKYRPSHLSAAAVLLAMQKLGVNVSWCESLSFHSGWSEGELVRC
VEDVRQLVDEGQRSPRRLNAIRRKFLHKTV*
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mRNA from alignment at tig00025321_pilon:1239873..1240865-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil7762.t1 ID=Gchil7762.t1|Name=Gchil7762.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=993bp|location=Sequence derived from alignment at tig00025321_pilon:1239873..1240865- (Gracilaria chilensis NLEC103_M9 male)
ATGATGCCGAAACGCGCTTTGGGGGACATTACCAACCGCCACGCCAATGT
GAGAAACTCATTCCCGCTTAAGCGTGCCGCTAAAGCCCAGAAAATCTCCA
ACAATATCTCTATCACAAAGAACCACCACCATGTACTCTCCGAAAAAGCG
CCAGTATCTCAAAACACGTTTCCATCGAAAACGAATACCAAGTACATCGA
TATTGATGCTTCGGACAAACTGAACCGTGTGGAAGGAAGCGATTTGGCTG
CAGTTATCCACAAGAACCATCTTCTGGCCGAAAAACGACACATGCCCAGC
ACCAACCTCTTGGAGTCCCACAAGACAGTCACAAGAGGAATGAGGGCGAT
TCTAGTTGATTGGATAGCTGATGTATGTGTGTGTCTCAAGTTGAAGGACA
GCTCCCTCCACTTATGTGTTCACATTCTGGATCGTTTCCTTCATAGTTAC
GAACCTACCCGAAAGACTCTTCAATTGGTCGGCAGTGTGTGCCTTTACAT
TGCTGCAAAGTACGAAGAGATCTACGCTCCAGATGCCAATGATTTTGTCA
CCCTGTCGGACGGTGCTTTCAGCATGGACGACGTGGTTCTCATGGAGGCA
ACCATCTTGAATGCTCTACGATTCGAGGTGAGCACTCCGTACTGCTTGAC
GTTCTTGAACCGCATTGGAAAGACACTCGAAGCAAAAGGCACGCACAATG
AGGTGGCACAGAACGTGTTGGAAAGCGCGCAAATGTTTGTAGAGTTGGCC
ATGGTGGATGGGCGTCATTTGAAATATCGACCAAGCCATCTCTCCGCTGC
TGCAGTGCTCCTCGCGATGCAAAAGCTTGGTGTCAACGTGAGCTGGTGCG
AAAGCCTCTCTTTCCACTCAGGTTGGAGCGAAGGCGAACTTGTTCGCTGC
GTTGAAGACGTTCGGCAGCTGGTTGATGAGGGCCAAAGATCACCACGGCG
TTTGAACGCCATTCGTAGAAAATTCTTGCACAAAACAGTCTGA
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Coding sequence (CDS) from alignment at tig00025321_pilon:1239873..1240865-

>Gchil7762.t1 ID=Gchil7762.t1|Name=Gchil7762.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=993bp|location=Sequence derived from alignment at tig00025321_pilon:1239873..1240865- (Gracilaria chilensis NLEC103_M9 male)
ATGATGCCGAAACGCGCTTTGGGGGACATTACCAACCGCCACGCCAATGT
GAGAAACTCATTCCCGCTTAAGCGTGCCGCTAAAGCCCAGAAAATCTCCA
ACAATATCTCTATCACAAAGAACCACCACCATGTACTCTCCGAAAAAGCG
CCAGTATCTCAAAACACGTTTCCATCGAAAACGAATACCAAGTACATCGA
TATTGATGCTTCGGACAAACTGAACCGTGTGGAAGGAAGCGATTTGGCTG
CAGTTATCCACAAGAACCATCTTCTGGCCGAAAAACGACACATGCCCAGC
ACCAACCTCTTGGAGTCCCACAAGACAGTCACAAGAGGAATGAGGGCGAT
TCTAGTTGATTGGATAGCTGATGTATGTGTGTGTCTCAAGTTGAAGGACA
GCTCCCTCCACTTATGTGTTCACATTCTGGATCGTTTCCTTCATAGTTAC
GAACCTACCCGAAAGACTCTTCAATTGGTCGGCAGTGTGTGCCTTTACAT
TGCTGCAAAGTACGAAGAGATCTACGCTCCAGATGCCAATGATTTTGTCA
CCCTGTCGGACGGTGCTTTCAGCATGGACGACGTGGTTCTCATGGAGGCA
ACCATCTTGAATGCTCTACGATTCGAGGTGAGCACTCCGTACTGCTTGAC
GTTCTTGAACCGCATTGGAAAGACACTCGAAGCAAAAGGCACGCACAATG
AGGTGGCACAGAACGTGTTGGAAAGCGCGCAAATGTTTGTAGAGTTGGCC
ATGGTGGATGGGCGTCATTTGAAATATCGACCAAGCCATCTCTCCGCTGC
TGCAGTGCTCCTCGCGATGCAAAAGCTTGGTGTCAACGTGAGCTGGTGCG
AAAGCCTCTCTTTCCACTCAGGTTGGAGCGAAGGCGAACTTGTTCGCTGC
GTTGAAGACGTTCGGCAGCTGGTTGATGAGGGCCAAAGATCACCACGGCG
TTTGAACGCCATTCGTAGAAAATTCTTGCACAAAACAGTCTGA
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