Gchil7760.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil7760.t1
Unique NameGchil7760.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length233
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00025321_piloncontigtig00025321_pilon:1232694..1233392 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog37659.JNLN01000001_gene39
Preferred namesafA
PFAMsCAP,LysM
Max annot lvl186801|Clostridia
Evalue1.49e-11
EggNOG OGsCOG2340@1|root,COG2340@2|Bacteria,1V6GZ@1239|Firmicutes,24BAQ@186801|Clostridia,36FMJ@31979|Clostridiaceae
DescriptionPFAM Cysteine-rich secretory protein family
COG categoryM
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7760Gchil7760Gracilaria chilensis NLEC103_M9 malegenetig00025321_pilon 1232694..1233392 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7760.t1.start1Gchil7760.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00025321_pilon 1232694..1232696 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7760.t1.CDS1Gchil7760.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00025321_pilon 1232694..1233392 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7760.t1.exon1Gchil7760.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00025321_pilon 1232694..1233392 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7760.t1.stop1Gchil7760.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00025321_pilon 1233390..1233392 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7760.t1Gchil7760.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00025321_pilon 1232694..1233392 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil7760.t1 ID=Gchil7760.t1|Name=Gchil7760.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=233bp
MAFSCRTEEGGVVYPYVYFKRDPRQDLNAKMFIGAPDSDREPADEEEVTT
KAPRTTSAMEAPGRNTKTPPSNAMMMETPMATPMATTSTTTTTAGTDEDG
AMESMPRDDAKGKMVCRGCGSVNFDEVNRYRARLGLSQLRWNDKMAREAA
AHSKDMYERKYFEHSELPYAENIAMNWGSHKWADISDAFFEQWKNSPRHD
ANMKNGAHECGGVGIYGDGDKFYGTQVFSRNC*
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spliced messenger RNA

>Gchil7760.t1 ID=Gchil7760.t1|Name=Gchil7760.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=699bp|location=Sequence derived from alignment at tig00025321_pilon:1232694..1233392+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGTTTTCATGCCGTACGGAAGAAGGCGGTGTGGTGTATCCGTACGT
GTACTTCAAACGCGACCCCAGACAAGATCTGAACGCCAAGATGTTCATCG
GGGCGCCCGACTCGGACAGGGAGCCTGCCGACGAGGAGGAAGTGACGACC
AAAGCGCCGCGCACGACGTCGGCAATGGAGGCACCGGGGCGAAACACAAA
GACGCCACCGAGCAACgcaatgatgatggagacgccgatggcgacgccga
tggcgacgacatcaacaacaacaacaacGGCGGGCACGGATGAGGATGGT
GCGATGGAATCGATGCCGCGCGACGACGCCAAGGGAAAGATGGTGTGTCG
GGGGTGCGGGTCGGTGAACTTTGACGAAGTGAACCGGTACCGGGCGCGTC
TCGGGCTGTCGCAGCTGCGGTGGAACGACAAGATGGCGCGGGAGGCGGCG
GCGCACAGCAAGGACATGTACGAGAGAAAGTACTTTGAACACAGCGAGTT
GCCGTATGCGGAGAACATCGCCATGAACTGGGGCTCGCACAAGTGGGCCG
ACATTTCGGACGCCTTCTTCGAGCAGTGGAAGAACAGCCCGCGGCACGAC
GCCAACATGAAGAACGGCGCGCACGAGTGCGGCGGCGTGGGCATCTACGG
CGATGGCGACAAGTTCTACGGCACGCAGGTGTTCTCGCGCAACTGCTAG
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protein sequence of Gchil7760.t1

>Gchil7760.t1 ID=Gchil7760.t1|Name=Gchil7760.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=233bp
MAFSCRTEEGGVVYPYVYFKRDPRQDLNAKMFIGAPDSDREPADEEEVTT
KAPRTTSAMEAPGRNTKTPPSNAMMMETPMATPMATTSTTTTTAGTDEDG
AMESMPRDDAKGKMVCRGCGSVNFDEVNRYRARLGLSQLRWNDKMAREAA
AHSKDMYERKYFEHSELPYAENIAMNWGSHKWADISDAFFEQWKNSPRHD
ANMKNGAHECGGVGIYGDGDKFYGTQVFSRNC*
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mRNA from alignment at tig00025321_pilon:1232694..1233392+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil7760.t1 ID=Gchil7760.t1|Name=Gchil7760.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=699bp|location=Sequence derived from alignment at tig00025321_pilon:1232694..1233392+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCGTTTTCATGCCGTACGGAAGAAGGCGGTGTGGTGTATCCGTACGT
GTACTTCAAACGCGACCCCAGACAAGATCTGAACGCCAAGATGTTCATCG
GGGCGCCCGACTCGGACAGGGAGCCTGCCGACGAGGAGGAAGTGACGACC
AAAGCGCCGCGCACGACGTCGGCAATGGAGGCACCGGGGCGAAACACAAA
GACGCCACCGAGCAACgcaatgatgatggagacgccgatggcgacgccga
tggcgacgacatcaacaacaacaacaacGGCGGGCACGGATGAGGATGGT
GCGATGGAATCGATGCCGCGCGACGACGCCAAGGGAAAGATGGTGTGTCG
GGGGTGCGGGTCGGTGAACTTTGACGAAGTGAACCGGTACCGGGCGCGTC
TCGGGCTGTCGCAGCTGCGGTGGAACGACAAGATGGCGCGGGAGGCGGCG
GCGCACAGCAAGGACATGTACGAGAGAAAGTACTTTGAACACAGCGAGTT
GCCGTATGCGGAGAACATCGCCATGAACTGGGGCTCGCACAAGTGGGCCG
ACATTTCGGACGCCTTCTTCGAGCAGTGGAAGAACAGCCCGCGGCACGAC
GCCAACATGAAGAACGGCGCGCACGAGTGCGGCGGCGTGGGCATCTACGG
CGATGGCGACAAGTTCTACGGCACGCAGGTGTTCTCGCGCAACTGCTAG
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Coding sequence (CDS) from alignment at tig00025321_pilon:1232694..1233392+

>Gchil7760.t1 ID=Gchil7760.t1|Name=Gchil7760.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=699bp|location=Sequence derived from alignment at tig00025321_pilon:1232694..1233392+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCGTTTTCATGCCGTACGGAAGAAGGCGGTGTGGTGTATCCGTACGT
GTACTTCAAACGCGACCCCAGACAAGATCTGAACGCCAAGATGTTCATCG
GGGCGCCCGACTCGGACAGGGAGCCTGCCGACGAGGAGGAAGTGACGACC
AAAGCGCCGCGCACGACGTCGGCAATGGAGGCACCGGGGCGAAACACAAA
GACGCCACCGAGCAACgcaatgatgatggagacgccgatggcgacgccga
tggcgacgacatcaacaacaacaacaacGGCGGGCACGGATGAGGATGGT
GCGATGGAATCGATGCCGCGCGACGACGCCAAGGGAAAGATGGTGTGTCG
GGGGTGCGGGTCGGTGAACTTTGACGAAGTGAACCGGTACCGGGCGCGTC
TCGGGCTGTCGCAGCTGCGGTGGAACGACAAGATGGCGCGGGAGGCGGCG
GCGCACAGCAAGGACATGTACGAGAGAAAGTACTTTGAACACAGCGAGTT
GCCGTATGCGGAGAACATCGCCATGAACTGGGGCTCGCACAAGTGGGCCG
ACATTTCGGACGCCTTCTTCGAGCAGTGGAAGAACAGCCCGCGGCACGAC
GCCAACATGAAGAACGGCGCGCACGAGTGCGGCGGCGTGGGCATCTACGG
CGATGGCGACAAGTTCTACGGCACGCAGGTGTTCTCGCGCAACTGCTAG
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