Gchil7757.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil7757.t1
Unique NameGchil7757.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length254
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00025321_piloncontigtig00025321_pilon:1055425..1056186 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog29875.EHK22164
Preferred nameTAP42
PFAMsTAP42
Max annot lvl4751|Fungi
KEGG koko:K17606
KEGG Pathwayko04136,ko04138,ko04140,map04136,map04138,map04140
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006355,GO:0006356,GO:0007154,GO:0007165,GO:0008150,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0010921,GO:0016020,GO:0019208,GO:0019219,GO:0019220,GO:0019222,GO:0019888,GO:0019898,GO:0019899,GO:0019902,GO:0019903,GO:0023052,GO:0030234,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031399,GO:0031929,GO:0032268,GO:0035303,GO:0035304,GO:0035556,GO:0043666,GO:0044424,GO:0044425,GO:0044444,GO:0044464,GO:0045893,GO:0045935,GO:0045943,GO:0048518,GO:0048522,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051174,GO:0051246,GO:0051252,GO:0051254,GO:0051336,GO:0051716,GO:0051721,GO:0060255,GO:0065007,GO:0065009,GO:0080090,GO:0098772,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141
Evalue1.76e-06
EggNOG OGsKOG2830@1|root,KOG2830@2759|Eukaryota,38DGV@33154|Opisthokonta,3NYBK@4751|Fungi,3QKWU@4890|Ascomycota,211DK@147550|Sordariomycetes,3TH6J@5125|Hypocreales,3U0UT@5129|Hypocreaceae
DescriptionTAP42-like family
COG categoryT
BRITEko00000,ko00001,ko01009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7757Gchil7757Gracilaria chilensis NLEC103_M9 malegenetig00025321_pilon 1055425..1056186 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7757.t1.stop1Gchil7757.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00025321_pilon 1055425..1055427 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7757.t1.CDS1Gchil7757.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00025321_pilon 1055425..1056186 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7757.t1.exon1Gchil7757.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00025321_pilon 1055425..1056186 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7757.t1.start1Gchil7757.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00025321_pilon 1056184..1056186 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7757.t1Gchil7757.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00025321_pilon 1055425..1056186 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil7757.t1 ID=Gchil7757.t1|Name=Gchil7757.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=254bp
MALHAWQGPAVQRLDKRVQCDAKLQTIFSDNDSYALHTETQKEGVPLNSP
EIVQSPTREREEKISTFKTVNTAENRLSLLMDYLEKCSITNQGDTDLHRA
SLLVRQSAVRRALDLFSSLQKEIAILRFVERPTAKGVDPRVKADQARERA
STSVLPYMPSIFRFVNQIEKERDKVFRPSHSLPKYSNEQWGENEAQILTT
ASTEKRKKYIAAKRRKEEEQSDGDEAVNRQTIEASKWDYWKDKLNKGSGN
SIW*
back to top

spliced messenger RNA

>Gchil7757.t1 ID=Gchil7757.t1|Name=Gchil7757.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=762bp|location=Sequence derived from alignment at tig00025321_pilon:1055425..1056186- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTCTGCATGCGTGGCAGGGTCCAGCTGTACAGCGACTTGACAAACG
CGTGCAGTGCGATGCAAAACTTCAAACGATTTTCTCCGACAATGATTCGT
ATGCATTGCACACAGAGACGCAAAAGGAGGGGGTACCGCTCAATTCACCG
GAGATTGTGCAATCACCTACTAGGGAGCGCGAGGAGAAGATTTCGACCTT
CAAAACGGTGAACACCGCGGAGAACAGGTTGAGTCTTCTTATGGATTATC
TTGAGAAGTGTTCCATCACCAATCAAGGCGACACTGATCTACATCGAGCC
TCCCTGCTTGTGCGTCAGTCTGCTGTGCGCCGTGCGCTGGATCTGTTTTC
TTCCTTGCAGAAAGAAATCGCCATTTTGCGCTTTGTCGAACGACCGACTG
CGAAGGGTGTCGATCCGAGAGTCAAAGCAGATCAAGCACGTGAGAGAGCG
TCAACTTCTGTCCTCCCATATATGCCAAGCATTTTTCGATTCGTTAACCA
AATAGAAAAAGAGAGAGATAAGGTGTTCAGACCAAGCCACTCCCTTCCCA
AGTATAGTAATGAGCAGTGGGGTGAGAATGAGGCTCAAATATTGACAACA
GCTTCAACTGAGAAGAGAAAGAAATATATCGCTGCAAAACGACGGAAAGA
GGAAGAACAAAGTGATGGCGATGAGGCAGTGAATCGCCAAACTATCGAGG
CAAGCAAATGGGATTACTGGAAAGACAAGCTCAACAAGGGCTCTGGTAAC
AGTATTTGGTAG
back to top

protein sequence of Gchil7757.t1

>Gchil7757.t1 ID=Gchil7757.t1|Name=Gchil7757.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=254bp
MALHAWQGPAVQRLDKRVQCDAKLQTIFSDNDSYALHTETQKEGVPLNSP
EIVQSPTREREEKISTFKTVNTAENRLSLLMDYLEKCSITNQGDTDLHRA
SLLVRQSAVRRALDLFSSLQKEIAILRFVERPTAKGVDPRVKADQARERA
STSVLPYMPSIFRFVNQIEKERDKVFRPSHSLPKYSNEQWGENEAQILTT
ASTEKRKKYIAAKRRKEEEQSDGDEAVNRQTIEASKWDYWKDKLNKGSGN
SIW*
back to top

mRNA from alignment at tig00025321_pilon:1055425..1056186-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil7757.t1 ID=Gchil7757.t1|Name=Gchil7757.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=762bp|location=Sequence derived from alignment at tig00025321_pilon:1055425..1056186- (Gracilaria chilensis NLEC103_M9 male)
ATGGCTCTGCATGCGTGGCAGGGTCCAGCTGTACAGCGACTTGACAAACG
CGTGCAGTGCGATGCAAAACTTCAAACGATTTTCTCCGACAATGATTCGT
ATGCATTGCACACAGAGACGCAAAAGGAGGGGGTACCGCTCAATTCACCG
GAGATTGTGCAATCACCTACTAGGGAGCGCGAGGAGAAGATTTCGACCTT
CAAAACGGTGAACACCGCGGAGAACAGGTTGAGTCTTCTTATGGATTATC
TTGAGAAGTGTTCCATCACCAATCAAGGCGACACTGATCTACATCGAGCC
TCCCTGCTTGTGCGTCAGTCTGCTGTGCGCCGTGCGCTGGATCTGTTTTC
TTCCTTGCAGAAAGAAATCGCCATTTTGCGCTTTGTCGAACGACCGACTG
CGAAGGGTGTCGATCCGAGAGTCAAAGCAGATCAAGCACGTGAGAGAGCG
TCAACTTCTGTCCTCCCATATATGCCAAGCATTTTTCGATTCGTTAACCA
AATAGAAAAAGAGAGAGATAAGGTGTTCAGACCAAGCCACTCCCTTCCCA
AGTATAGTAATGAGCAGTGGGGTGAGAATGAGGCTCAAATATTGACAACA
GCTTCAACTGAGAAGAGAAAGAAATATATCGCTGCAAAACGACGGAAAGA
GGAAGAACAAAGTGATGGCGATGAGGCAGTGAATCGCCAAACTATCGAGG
CAAGCAAATGGGATTACTGGAAAGACAAGCTCAACAAGGGCTCTGGTAAC
AGTATTTGGTAG
back to top

Coding sequence (CDS) from alignment at tig00025321_pilon:1055425..1056186-

>Gchil7757.t1 ID=Gchil7757.t1|Name=Gchil7757.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=762bp|location=Sequence derived from alignment at tig00025321_pilon:1055425..1056186- (Gracilaria chilensis NLEC103_M9 male)
ATGGCTCTGCATGCGTGGCAGGGTCCAGCTGTACAGCGACTTGACAAACG
CGTGCAGTGCGATGCAAAACTTCAAACGATTTTCTCCGACAATGATTCGT
ATGCATTGCACACAGAGACGCAAAAGGAGGGGGTACCGCTCAATTCACCG
GAGATTGTGCAATCACCTACTAGGGAGCGCGAGGAGAAGATTTCGACCTT
CAAAACGGTGAACACCGCGGAGAACAGGTTGAGTCTTCTTATGGATTATC
TTGAGAAGTGTTCCATCACCAATCAAGGCGACACTGATCTACATCGAGCC
TCCCTGCTTGTGCGTCAGTCTGCTGTGCGCCGTGCGCTGGATCTGTTTTC
TTCCTTGCAGAAAGAAATCGCCATTTTGCGCTTTGTCGAACGACCGACTG
CGAAGGGTGTCGATCCGAGAGTCAAAGCAGATCAAGCACGTGAGAGAGCG
TCAACTTCTGTCCTCCCATATATGCCAAGCATTTTTCGATTCGTTAACCA
AATAGAAAAAGAGAGAGATAAGGTGTTCAGACCAAGCCACTCCCTTCCCA
AGTATAGTAATGAGCAGTGGGGTGAGAATGAGGCTCAAATATTGACAACA
GCTTCAACTGAGAAGAGAAAGAAATATATCGCTGCAAAACGACGGAAAGA
GGAAGAACAAAGTGATGGCGATGAGGCAGTGAATCGCCAAACTATCGAGG
CAAGCAAATGGGATTACTGGAAAGACAAGCTCAACAAGGGCTCTGGTAAC
AGTATTTGGTAG
back to top