Gchil7740.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil7740.t1
Unique NameGchil7740.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length571
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00025321_piloncontigtig00025321_pilon:862096..863808 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7740Gchil7740Gracilaria chilensis NLEC103_M9 malegenetig00025321_pilon 862096..863808 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7740.t1.start1Gchil7740.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00025321_pilon 862096..862098 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7740.t1.CDS1Gchil7740.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00025321_pilon 862096..863808 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7740.t1.exon1Gchil7740.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00025321_pilon 862096..863808 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7740.t1.stop1Gchil7740.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00025321_pilon 863806..863808 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7740.t1Gchil7740.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00025321_pilon 862096..863808 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil7740.t1 ID=Gchil7740.t1|Name=Gchil7740.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=571bp
MSTRETGEQMDEREHEKRGEEEEEEALELIAYVEEWLDAVWRHNGGPSAG
AAADRRVALAKEAVHEAGRLYGERGVDWPEFVRRVNDGTRLVSRRALRGI
CMHRRMIRARAQREKAKKRAEGEDMVVDGGQNEQGKAHRAEIEMREGEAK
EEELNTEEQKNETKMTEKRAEVEKHRTLGEEKAEFWLCEHVSRVGEAHRH
DVEVVRGDERKLAQEFTRHALSFMQEEDEEEVGGEGKAYVAGKEDDPSPE
ALQRAREAIELQHAQFERGQQCVHELIDAVRGIVCGVAADNAISSLDIYE
HFEYHQCGLGDMAEAALGGVGLEMDSSGAPSAQAVVSLGRRLAGLLLSPR
AAAAARRELGRDTSGAMAAASVAQWGGFELRDVAALLVAQRRVLRRGRAN
RRADRVRRRLSKLERNATTGAAAHAARAERWLMGGALDVRREAAVAERDA
LRTGGVRRGGGDDEDCDSGDAVGEQLVVRAKTLRARMAARWALRRGHGDG
DGVAEKAVVVLGMGTELHVKRLLLTLARLRARGRPLRARAATAALYAEMP
HLRSCRALRLRRLRGGAGVG*
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spliced messenger RNA

>Gchil7740.t1 ID=Gchil7740.t1|Name=Gchil7740.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1713bp|location=Sequence derived from alignment at tig00025321_pilon:862096..863808+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGACTAGAGAGACAGGAGAACAGATggatgagagggagcatgagaa
gcgaggggaagaggaggaggaggaggcattggaaCTCATAGCGTACGTCG
AGGAGTGGCTAGATGCAGTGTGGCGGCATAATGGCGGGCCATCGGCCGGC
GCAGCGGCTGATCGGCGCGTGGCTCTGGCCAAGGAGGCTGTCCACGAAGC
CGGGCGGCTGTATGGCGAAAGGGGCGTGGATTGGCCGGAATTTGTTCGCC
GCGTGAACGATGGGACGCGCTTAGTGAGCCGACGAGCTCTGCGTGGCATA
TGCATGCATCGGCGAATGATTCGGGCGCGTGCTCAACGGGAAAAAGCGAA
AAAGAGAGCTGAAGGCGAGGATATGGTGGTGGACGGGGGACAGAATGAGC
AGGGGAAGGCGCACAGGGCAGAGATAGAGATGAGGGAGGGGGAAGCGAaa
gaagaagagttgaatacggaagaacagaagaatgagacgaagatgacgga
gaaaagGGCGGAAGTGGAGAAGCACCGGACGTTGGGGGAGGAAAAAGCGG
AGTTTTGGCTGTGCGAGCACGTCAGCAGAGTTGGTGAGGCCCACAGGCAC
GACGTGGAAGTGGTCCGAGGGGATGAACGGAAGTTGGCGCAGGAATTCAC
CCGGCACGCACTGAGCTTTATGCAAGAAgaagacgaagaggaagtgggcg
gggaagggaaggCGTACGTAGCAGGCAAAGAGGACGATCCATCGCCGGAG
GCGTTGCAGCGGGCTCGCGAGGCAATCGAGTTGCAGCACGCCCAATTTGA
GCGCGGGCAGCAGTGCGTGCACGAGCTCATAGACGCAGTAAGGGGTATAG
TTTGTGGCGTTGCCGCCGACAACGCAATATCGAGCTTGGACATATATGAA
CACTTCGAGTACCATCAGTGCGGCCTGGGCGACATGGCAGAGGCGGCTCT
GGGCGGCGTTGGACTGGAGATGGACAGCAGTGGCGCACCTAGCGCGCAAG
CGGTGGTGTCGCTGGGACGACGTCTCGCGGGGCTTCTGTTGTCGCCGCGG
GCAGCCGCAGCGGCGCGTCGCGAGCTCGGGCGTGACACCAGCGGTGCGAT
GGCGGCCGCCTCGGTAGCGCAGTGGGGCGGCTTCGAACTTCGTGATGTGG
CAGCGCTGCTAGTAGCGCAGCGTCGAGTATTGCGACGCGGTCGCGCAAAC
CGTCGCGCAGATCGCGTGCGACGGCGTCTGAGCAAGCTCGAGCGAAACGC
CACCACCGGTGCCGCCGCTCACGCCGCGCGAGCGGAGCGGTGGCTCATGG
GCGGGGCGCTTGACGTGAGGCGCGAGGCGGCCGTCGCCGAGCGTGACGCA
CTCCGCACCGGCGGCGTCCGCCGCGGCGGCGGCGACGACGAAGACTGCGA
TAGTGGCGATGCCGTGGGCGAGCAGCTGGTGGTGCGCGCCAAGACACTGC
GGGCGAGGATGGCGGCGCGCTGGGCGCTGCGGCGCGGCCACGGCGACGGA
GACGGCGTGGCCGAGAAGGCGGTGGTGGTGCTCGGCATGGGCACCGAGCT
GCACGTGAAGCGGCTGCTGCTCACGTTGgcgcggctgcgtgcgcgcggcc
gcccgctgcgtgcgcgcgccgccaccgccgcgcTGTATGCCGAGATGCCG
CATTTGCGCTCGTGCCGCGCGCTGCGGTTGCGCCGTCTGCGCGGTGGCGC
CGGCGTTGGCTGA
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protein sequence of Gchil7740.t1

>Gchil7740.t1 ID=Gchil7740.t1|Name=Gchil7740.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=571bp
MSTRETGEQMDEREHEKRGEEEEEEALELIAYVEEWLDAVWRHNGGPSAG
AAADRRVALAKEAVHEAGRLYGERGVDWPEFVRRVNDGTRLVSRRALRGI
CMHRRMIRARAQREKAKKRAEGEDMVVDGGQNEQGKAHRAEIEMREGEAK
EEELNTEEQKNETKMTEKRAEVEKHRTLGEEKAEFWLCEHVSRVGEAHRH
DVEVVRGDERKLAQEFTRHALSFMQEEDEEEVGGEGKAYVAGKEDDPSPE
ALQRAREAIELQHAQFERGQQCVHELIDAVRGIVCGVAADNAISSLDIYE
HFEYHQCGLGDMAEAALGGVGLEMDSSGAPSAQAVVSLGRRLAGLLLSPR
AAAAARRELGRDTSGAMAAASVAQWGGFELRDVAALLVAQRRVLRRGRAN
RRADRVRRRLSKLERNATTGAAAHAARAERWLMGGALDVRREAAVAERDA
LRTGGVRRGGGDDEDCDSGDAVGEQLVVRAKTLRARMAARWALRRGHGDG
DGVAEKAVVVLGMGTELHVKRLLLTLARLRARGRPLRARAATAALYAEMP
HLRSCRALRLRRLRGGAGVG*
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mRNA from alignment at tig00025321_pilon:862096..863808+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil7740.t1 ID=Gchil7740.t1|Name=Gchil7740.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1713bp|location=Sequence derived from alignment at tig00025321_pilon:862096..863808+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCGACTAGAGAGACAGGAGAACAGATggatgagagggagcatgagaa
gcgaggggaagaggaggaggaggaggcattggaaCTCATAGCGTACGTCG
AGGAGTGGCTAGATGCAGTGTGGCGGCATAATGGCGGGCCATCGGCCGGC
GCAGCGGCTGATCGGCGCGTGGCTCTGGCCAAGGAGGCTGTCCACGAAGC
CGGGCGGCTGTATGGCGAAAGGGGCGTGGATTGGCCGGAATTTGTTCGCC
GCGTGAACGATGGGACGCGCTTAGTGAGCCGACGAGCTCTGCGTGGCATA
TGCATGCATCGGCGAATGATTCGGGCGCGTGCTCAACGGGAAAAAGCGAA
AAAGAGAGCTGAAGGCGAGGATATGGTGGTGGACGGGGGACAGAATGAGC
AGGGGAAGGCGCACAGGGCAGAGATAGAGATGAGGGAGGGGGAAGCGAaa
gaagaagagttgaatacggaagaacagaagaatgagacgaagatgacgga
gaaaagGGCGGAAGTGGAGAAGCACCGGACGTTGGGGGAGGAAAAAGCGG
AGTTTTGGCTGTGCGAGCACGTCAGCAGAGTTGGTGAGGCCCACAGGCAC
GACGTGGAAGTGGTCCGAGGGGATGAACGGAAGTTGGCGCAGGAATTCAC
CCGGCACGCACTGAGCTTTATGCAAGAAgaagacgaagaggaagtgggcg
gggaagggaaggCGTACGTAGCAGGCAAAGAGGACGATCCATCGCCGGAG
GCGTTGCAGCGGGCTCGCGAGGCAATCGAGTTGCAGCACGCCCAATTTGA
GCGCGGGCAGCAGTGCGTGCACGAGCTCATAGACGCAGTAAGGGGTATAG
TTTGTGGCGTTGCCGCCGACAACGCAATATCGAGCTTGGACATATATGAA
CACTTCGAGTACCATCAGTGCGGCCTGGGCGACATGGCAGAGGCGGCTCT
GGGCGGCGTTGGACTGGAGATGGACAGCAGTGGCGCACCTAGCGCGCAAG
CGGTGGTGTCGCTGGGACGACGTCTCGCGGGGCTTCTGTTGTCGCCGCGG
GCAGCCGCAGCGGCGCGTCGCGAGCTCGGGCGTGACACCAGCGGTGCGAT
GGCGGCCGCCTCGGTAGCGCAGTGGGGCGGCTTCGAACTTCGTGATGTGG
CAGCGCTGCTAGTAGCGCAGCGTCGAGTATTGCGACGCGGTCGCGCAAAC
CGTCGCGCAGATCGCGTGCGACGGCGTCTGAGCAAGCTCGAGCGAAACGC
CACCACCGGTGCCGCCGCTCACGCCGCGCGAGCGGAGCGGTGGCTCATGG
GCGGGGCGCTTGACGTGAGGCGCGAGGCGGCCGTCGCCGAGCGTGACGCA
CTCCGCACCGGCGGCGTCCGCCGCGGCGGCGGCGACGACGAAGACTGCGA
TAGTGGCGATGCCGTGGGCGAGCAGCTGGTGGTGCGCGCCAAGACACTGC
GGGCGAGGATGGCGGCGCGCTGGGCGCTGCGGCGCGGCCACGGCGACGGA
GACGGCGTGGCCGAGAAGGCGGTGGTGGTGCTCGGCATGGGCACCGAGCT
GCACGTGAAGCGGCTGCTGCTCACGTTGgcgcggctgcgtgcgcgcggcc
gcccgctgcgtgcgcgcgccgccaccgccgcgcTGTATGCCGAGATGCCG
CATTTGCGCTCGTGCCGCGCGCTGCGGTTGCGCCGTCTGCGCGGTGGCGC
CGGCGTTGGCTGA
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Coding sequence (CDS) from alignment at tig00025321_pilon:862096..863808+

>Gchil7740.t1 ID=Gchil7740.t1|Name=Gchil7740.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1713bp|location=Sequence derived from alignment at tig00025321_pilon:862096..863808+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCGACTAGAGAGACAGGAGAACAGATggatgagagggagcatgagaa
gcgaggggaagaggaggaggaggaggcattggaaCTCATAGCGTACGTCG
AGGAGTGGCTAGATGCAGTGTGGCGGCATAATGGCGGGCCATCGGCCGGC
GCAGCGGCTGATCGGCGCGTGGCTCTGGCCAAGGAGGCTGTCCACGAAGC
CGGGCGGCTGTATGGCGAAAGGGGCGTGGATTGGCCGGAATTTGTTCGCC
GCGTGAACGATGGGACGCGCTTAGTGAGCCGACGAGCTCTGCGTGGCATA
TGCATGCATCGGCGAATGATTCGGGCGCGTGCTCAACGGGAAAAAGCGAA
AAAGAGAGCTGAAGGCGAGGATATGGTGGTGGACGGGGGACAGAATGAGC
AGGGGAAGGCGCACAGGGCAGAGATAGAGATGAGGGAGGGGGAAGCGAaa
gaagaagagttgaatacggaagaacagaagaatgagacgaagatgacgga
gaaaagGGCGGAAGTGGAGAAGCACCGGACGTTGGGGGAGGAAAAAGCGG
AGTTTTGGCTGTGCGAGCACGTCAGCAGAGTTGGTGAGGCCCACAGGCAC
GACGTGGAAGTGGTCCGAGGGGATGAACGGAAGTTGGCGCAGGAATTCAC
CCGGCACGCACTGAGCTTTATGCAAGAAgaagacgaagaggaagtgggcg
gggaagggaaggCGTACGTAGCAGGCAAAGAGGACGATCCATCGCCGGAG
GCGTTGCAGCGGGCTCGCGAGGCAATCGAGTTGCAGCACGCCCAATTTGA
GCGCGGGCAGCAGTGCGTGCACGAGCTCATAGACGCAGTAAGGGGTATAG
TTTGTGGCGTTGCCGCCGACAACGCAATATCGAGCTTGGACATATATGAA
CACTTCGAGTACCATCAGTGCGGCCTGGGCGACATGGCAGAGGCGGCTCT
GGGCGGCGTTGGACTGGAGATGGACAGCAGTGGCGCACCTAGCGCGCAAG
CGGTGGTGTCGCTGGGACGACGTCTCGCGGGGCTTCTGTTGTCGCCGCGG
GCAGCCGCAGCGGCGCGTCGCGAGCTCGGGCGTGACACCAGCGGTGCGAT
GGCGGCCGCCTCGGTAGCGCAGTGGGGCGGCTTCGAACTTCGTGATGTGG
CAGCGCTGCTAGTAGCGCAGCGTCGAGTATTGCGACGCGGTCGCGCAAAC
CGTCGCGCAGATCGCGTGCGACGGCGTCTGAGCAAGCTCGAGCGAAACGC
CACCACCGGTGCCGCCGCTCACGCCGCGCGAGCGGAGCGGTGGCTCATGG
GCGGGGCGCTTGACGTGAGGCGCGAGGCGGCCGTCGCCGAGCGTGACGCA
CTCCGCACCGGCGGCGTCCGCCGCGGCGGCGGCGACGACGAAGACTGCGA
TAGTGGCGATGCCGTGGGCGAGCAGCTGGTGGTGCGCGCCAAGACACTGC
GGGCGAGGATGGCGGCGCGCTGGGCGCTGCGGCGCGGCCACGGCGACGGA
GACGGCGTGGCCGAGAAGGCGGTGGTGGTGCTCGGCATGGGCACCGAGCT
GCACGTGAAGCGGCTGCTGCTCACGTTGgcgcggctgcgtgcgcgcggcc
gcccgctgcgtgcgcgcgccgccaccgccgcgcTGTATGCCGAGATGCCG
CATTTGCGCTCGTGCCGCGCGCTGCGGTTGCGCCGTCTGCGCGGTGGCGC
CGGCGTTGGCTGA
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