Gchil7734.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil7734.t1
Unique NameGchil7734.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length394
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00025321_piloncontigtig00025321_pilon:806130..807311 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog36331.EPrPI00000014680
Max annot lvl121069|Pythiales
Evalue8.05e-08
EggNOG OGs2E3H1@1|root,2SAJC@2759|Eukaryota,1ME2R@121069|Pythiales
Descriptionfunction. Source PGD
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7734Gchil7734Gracilaria chilensis NLEC103_M9 malegenetig00025321_pilon 806130..807311 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7734.t1.stop1Gchil7734.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00025321_pilon 806130..806132 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7734.t1.CDS1Gchil7734.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00025321_pilon 806130..807311 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7734.t1.exon1Gchil7734.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00025321_pilon 806130..807311 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7734.t1.start1Gchil7734.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00025321_pilon 807309..807311 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7734.t1Gchil7734.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00025321_pilon 806130..807311 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil7734.t1 ID=Gchil7734.t1|Name=Gchil7734.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=394bp
MHAAMHAATLKGVVLALLSAASLFAAARAHQAIAYPWPISNDGACRVGKF
KHCPGPCPTDHLRGDQTPDSPSVTVRRGRSLYVNIKRNNHAGGFVRWTLV
HVRDMHNKRKHEQGAFYYTCGDQRMSLCTALNRRRDCTYDRRGKYYRHRV
PVPPVYADGMYVLGYAWYGGTLENGLRGDFGDYYDCMYVQVKGGPYKQSY
QPTFDMGKSYTGKNGLCKARTNWLGDCSKEPCTHRSKAKYVLPWQFASGR
KPNKIFNTAFKKPYRSTSAGKHAPKLSGVSLRVAKHPGQVLATSRWGSVA
NVMVRKRSSITATCDVSGAVAHVIFYRNGVRVKKVAKGPYAIAGAYYIKH
KGRFVLRLHPWKVALGPDFYSLSCVVHGKDGSVQYATMNVQQS*
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spliced messenger RNA

>Gchil7734.t1 ID=Gchil7734.t1|Name=Gchil7734.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1182bp|location=Sequence derived from alignment at tig00025321_pilon:806130..807311- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCACGCCGCCATGCACGCCGCCACGCTCAAAGGCGTCGTGCTCGCGCT
GCTAAGCGCGGCGTCATTGTTCGCAGCCGCGCGCGCGCACCAGGCCATCG
CGTACCCGTGGCCCATCTCCAACGACGGTGCCTGTCGCGTGGGCAAGTTC
AAGCATTGTCCCGGTCCGTGTCCCACCGATCACCTCCGCGGCGATCAGAC
GCCTGACTCGCCCTCCGTCACCGTTCGGCGTGGACGCAGTCTTTACGTCA
ACATCAAGCGCAACAACCATGCCGGCGGCTTTGTGAGGTGGACTCTGGTG
CATGTCAGGGACATGCACAACAAGCGCAAGCACGAACAGGGCGCCTTTTA
CTACACCTGCGGCGATCAGCGAATGTCGCTGTGTACTGCCCTCAATCGAC
GGCGCGACTGCACCTACGACCGTCGCGGAAAGTATTATCGACACCGCGTC
CCCGTGCCGCCCGTGTATGCCGACGGCATGTACGTGCTGGGCTATGCGTG
GTACGGCGGCACGCTGGAAAATGGGCTGCGCGGCGATTTTGGCGACTACT
ACGACTGCATGTACGTGCAAGTCAAGGGCGGCCCCTACAAACAATCGTAC
CAACCCACGTTCGACATGGGCAAGTCGTACACCGGAAAAAACGGATTGTG
CAAAGCTCGCACCAATTGGTTGGGCGACTGTTCCAAGGAACCGTGCACGC
ACAGAAGCAAAGCCAAGTACGTGCTGCCGTGGCAGTTTGCAAGCGGAAGG
AAGCCGAACAAGATTTTCAACACGGCCTTCAAGAAACCATATCGATCCAC
GAGCGCCGGCAAACACGCGCCCAAGCTAAGCGGTGTTTCACTGCGTGTGG
CGAAGCATCCTGGGCAGGTGCTGGCCACTTCCAGATGGGGTTCGGTTGCC
AACGTTATGGTGCGGAAGCGAAGCAGCATCACTGCGACCTGCGACGTGTC
TGGCGCCGTTGCCCACGTCATTTTCTATCGAAACGGCGTGCGCGTGAAGA
AGGTGGCAAAAGGGCCCTACGCCATTGCGGGTGCGTATTACATTAAGCAC
AAAGGGCGGTTCGTGCTGCGGCTGCACCCGTGGAAAGTGGCCTTGGGGCC
CGACTTCTACTCGCTTTCTTGTGTAGTGCACGGCAAGGACGGCAGCGTGC
AGTACGCCACGATGAACGTTCAACAGAGCTGA
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protein sequence of Gchil7734.t1

>Gchil7734.t1 ID=Gchil7734.t1|Name=Gchil7734.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=394bp
MHAAMHAATLKGVVLALLSAASLFAAARAHQAIAYPWPISNDGACRVGKF
KHCPGPCPTDHLRGDQTPDSPSVTVRRGRSLYVNIKRNNHAGGFVRWTLV
HVRDMHNKRKHEQGAFYYTCGDQRMSLCTALNRRRDCTYDRRGKYYRHRV
PVPPVYADGMYVLGYAWYGGTLENGLRGDFGDYYDCMYVQVKGGPYKQSY
QPTFDMGKSYTGKNGLCKARTNWLGDCSKEPCTHRSKAKYVLPWQFASGR
KPNKIFNTAFKKPYRSTSAGKHAPKLSGVSLRVAKHPGQVLATSRWGSVA
NVMVRKRSSITATCDVSGAVAHVIFYRNGVRVKKVAKGPYAIAGAYYIKH
KGRFVLRLHPWKVALGPDFYSLSCVVHGKDGSVQYATMNVQQS*
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mRNA from alignment at tig00025321_pilon:806130..807311-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil7734.t1 ID=Gchil7734.t1|Name=Gchil7734.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1182bp|location=Sequence derived from alignment at tig00025321_pilon:806130..807311- (Gracilaria chilensis NLEC103_M9 male)
ATGCACGCCGCCATGCACGCCGCCACGCTCAAAGGCGTCGTGCTCGCGCT
GCTAAGCGCGGCGTCATTGTTCGCAGCCGCGCGCGCGCACCAGGCCATCG
CGTACCCGTGGCCCATCTCCAACGACGGTGCCTGTCGCGTGGGCAAGTTC
AAGCATTGTCCCGGTCCGTGTCCCACCGATCACCTCCGCGGCGATCAGAC
GCCTGACTCGCCCTCCGTCACCGTTCGGCGTGGACGCAGTCTTTACGTCA
ACATCAAGCGCAACAACCATGCCGGCGGCTTTGTGAGGTGGACTCTGGTG
CATGTCAGGGACATGCACAACAAGCGCAAGCACGAACAGGGCGCCTTTTA
CTACACCTGCGGCGATCAGCGAATGTCGCTGTGTACTGCCCTCAATCGAC
GGCGCGACTGCACCTACGACCGTCGCGGAAAGTATTATCGACACCGCGTC
CCCGTGCCGCCCGTGTATGCCGACGGCATGTACGTGCTGGGCTATGCGTG
GTACGGCGGCACGCTGGAAAATGGGCTGCGCGGCGATTTTGGCGACTACT
ACGACTGCATGTACGTGCAAGTCAAGGGCGGCCCCTACAAACAATCGTAC
CAACCCACGTTCGACATGGGCAAGTCGTACACCGGAAAAAACGGATTGTG
CAAAGCTCGCACCAATTGGTTGGGCGACTGTTCCAAGGAACCGTGCACGC
ACAGAAGCAAAGCCAAGTACGTGCTGCCGTGGCAGTTTGCAAGCGGAAGG
AAGCCGAACAAGATTTTCAACACGGCCTTCAAGAAACCATATCGATCCAC
GAGCGCCGGCAAACACGCGCCCAAGCTAAGCGGTGTTTCACTGCGTGTGG
CGAAGCATCCTGGGCAGGTGCTGGCCACTTCCAGATGGGGTTCGGTTGCC
AACGTTATGGTGCGGAAGCGAAGCAGCATCACTGCGACCTGCGACGTGTC
TGGCGCCGTTGCCCACGTCATTTTCTATCGAAACGGCGTGCGCGTGAAGA
AGGTGGCAAAAGGGCCCTACGCCATTGCGGGTGCGTATTACATTAAGCAC
AAAGGGCGGTTCGTGCTGCGGCTGCACCCGTGGAAAGTGGCCTTGGGGCC
CGACTTCTACTCGCTTTCTTGTGTAGTGCACGGCAAGGACGGCAGCGTGC
AGTACGCCACGATGAACGTTCAACAGAGCTGA
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Coding sequence (CDS) from alignment at tig00025321_pilon:806130..807311-

>Gchil7734.t1 ID=Gchil7734.t1|Name=Gchil7734.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1182bp|location=Sequence derived from alignment at tig00025321_pilon:806130..807311- (Gracilaria chilensis NLEC103_M9 male)
ATGCACGCCGCCATGCACGCCGCCACGCTCAAAGGCGTCGTGCTCGCGCT
GCTAAGCGCGGCGTCATTGTTCGCAGCCGCGCGCGCGCACCAGGCCATCG
CGTACCCGTGGCCCATCTCCAACGACGGTGCCTGTCGCGTGGGCAAGTTC
AAGCATTGTCCCGGTCCGTGTCCCACCGATCACCTCCGCGGCGATCAGAC
GCCTGACTCGCCCTCCGTCACCGTTCGGCGTGGACGCAGTCTTTACGTCA
ACATCAAGCGCAACAACCATGCCGGCGGCTTTGTGAGGTGGACTCTGGTG
CATGTCAGGGACATGCACAACAAGCGCAAGCACGAACAGGGCGCCTTTTA
CTACACCTGCGGCGATCAGCGAATGTCGCTGTGTACTGCCCTCAATCGAC
GGCGCGACTGCACCTACGACCGTCGCGGAAAGTATTATCGACACCGCGTC
CCCGTGCCGCCCGTGTATGCCGACGGCATGTACGTGCTGGGCTATGCGTG
GTACGGCGGCACGCTGGAAAATGGGCTGCGCGGCGATTTTGGCGACTACT
ACGACTGCATGTACGTGCAAGTCAAGGGCGGCCCCTACAAACAATCGTAC
CAACCCACGTTCGACATGGGCAAGTCGTACACCGGAAAAAACGGATTGTG
CAAAGCTCGCACCAATTGGTTGGGCGACTGTTCCAAGGAACCGTGCACGC
ACAGAAGCAAAGCCAAGTACGTGCTGCCGTGGCAGTTTGCAAGCGGAAGG
AAGCCGAACAAGATTTTCAACACGGCCTTCAAGAAACCATATCGATCCAC
GAGCGCCGGCAAACACGCGCCCAAGCTAAGCGGTGTTTCACTGCGTGTGG
CGAAGCATCCTGGGCAGGTGCTGGCCACTTCCAGATGGGGTTCGGTTGCC
AACGTTATGGTGCGGAAGCGAAGCAGCATCACTGCGACCTGCGACGTGTC
TGGCGCCGTTGCCCACGTCATTTTCTATCGAAACGGCGTGCGCGTGAAGA
AGGTGGCAAAAGGGCCCTACGCCATTGCGGGTGCGTATTACATTAAGCAC
AAAGGGCGGTTCGTGCTGCGGCTGCACCCGTGGAAAGTGGCCTTGGGGCC
CGACTTCTACTCGCTTTCTTGTGTAGTGCACGGCAAGGACGGCAGCGTGC
AGTACGCCACGATGAACGTTCAACAGAGCTGA
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