Gchil7725.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil7725.t1
Unique NameGchil7725.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length202
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00025321_piloncontigtig00025321_pilon:663726..665070 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7725Gchil7725Gracilaria chilensis NLEC103_M9 malegenetig00025321_pilon 663726..665070 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7725.t1Gchil7725.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00025321_pilon 663726..665070 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7725.t1.start1Gchil7725.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00025321_pilon 663726..663728 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7725.t1.CDS1Gchil7725.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00025321_pilon 663726..663752 +
Gchil7725.t1.CDS2Gchil7725.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00025321_pilon 664492..665070 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7725.t1.exon1Gchil7725.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00025321_pilon 663726..663752 +
Gchil7725.t1.exon2Gchil7725.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00025321_pilon 664492..665070 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7725.t1.intron1Gchil7725.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00025321_pilon 663753..664491 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7725.t1.stop1Gchil7725.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00025321_pilon 665068..665070 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil7725.t1 ID=Gchil7725.t1|Name=Gchil7725.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=202bp
MKKSKAGNDCSAGEPPKKGQIEPTSDVLEISDSEKEVDDSTVFCRNSEFS
PLLLQSIWEDEDSTVQFITLAIVLPSGIKVEQISSQVVSNGRKFEIIVEW
PQPMMDVKFMHKAWLNKQFDPMKGYHPKVLGFQKALKSLRSSSVQTVTLT
CRISSPFSVQTHIPKRQILSFSDGTNILYVDLKAPDDKYMKKEDIICIEV
N*
back to top

spliced messenger RNA

>Gchil7725.t1 ID=Gchil7725.t1|Name=Gchil7725.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=606bp|location=Sequence derived from alignment at tig00025321_pilon:663726..665070+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAAAAGTCGAAGGCGGGAAACGATTGCTCTGCCGGGGAACCACCGAA
GAAGGGACAGATCGAACCCACTAGTGATGTTCTGGAAATCTCGGACTCAG
AGAAGGAGGTTGACGATTCTACTGTCTTTTGCAGAAATTCTGAATTCAGT
CCTCTTTTGTTACAATCAATTTGGGAAGATGAAGACTCAACAGTGCAATT
TATTACTCTGGCAATAGTGTTGCCGTCTGGAATTAAAGTAGAGCAAATCA
GTAGCCAAGTGGTAAGCAATGGTCGGAAATTCGAAATAATTGTAGAATGG
CCTCAGCCTATGATGGATGTGAAGTTTATGCACAAGGCGTGGCTAAATAA
GCAATTTGACCCTATGAAGGGCTACCATCCTAAAGTTCTTGGATTTCAGA
AAGCTTTGAAAAGTTTAAGAAGCTCATCGGTTCAGACGGTAACTTTGACT
TGCCGTATTTCGTCACCGTTTTCTGTTCAAACTCACATTCCAAAACGCCA
GATTCTAAGCTTTTCTGATGGAACAAATATCCTCTATGTCGATTTAAAGG
CTCCTGATGACAAGTATATGAAGAAAGAAGACATTATTTGCATTGAAGTG
AACTAG
back to top

protein sequence of Gchil7725.t1

>Gchil7725.t1 ID=Gchil7725.t1|Name=Gchil7725.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=202bp
MKKSKAGNDCSAGEPPKKGQIEPTSDVLEISDSEKEVDDSTVFCRNSEFS
PLLLQSIWEDEDSTVQFITLAIVLPSGIKVEQISSQVVSNGRKFEIIVEW
PQPMMDVKFMHKAWLNKQFDPMKGYHPKVLGFQKALKSLRSSSVQTVTLT
CRISSPFSVQTHIPKRQILSFSDGTNILYVDLKAPDDKYMKKEDIICIEV
N*
back to top

mRNA from alignment at tig00025321_pilon:663726..665070+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil7725.t1 ID=Gchil7725.t1|Name=Gchil7725.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1345bp|location=Sequence derived from alignment at tig00025321_pilon:663726..665070+ (Gracilaria chilensis NLEC103_M9 male)
ATGAAAAAGTCGAAGGCGGGAAACGATGTAGGTTTGACATTGAGAGCGTT
TTCCCGTGACATCGGAGTTCGAAAGGTAAGAATTTGAGGACTTCATCCCC
CCTTACATTTGATAAAGGCAAGTGTCTAAGGGTTTCTCGCTGCAGGCAAG
CTGTAGTTTTTGGCGCGCAAAACAAACACAGGTGCATTCTTCGAAAAGAG
AAGGCCATTACAGATTTAGATAGAATGCGCACTAATATTAAATACAGTAG
AAACTACGCATTGAGACATATCAAAACCAAAAAACCATGCCCTAGAGATA
TACAATGACGTGTCAATTTTCAAAAATGTATTCCAAAGGAAACAGCGGCC
ATCGAAGCTTGAGTTCTGTTCCAGAATGACGAGAATATAAAAGACATTGT
TTGACTACAAGTCCACCCACGTCAAAATTATCATCTTGAACAGGCCACAT
CTTCTTCAAAACCCGAGTAATTATGACTCCAGCAGTTAAAAGACCTAGCC
TAACAGACGATTCCGCAGCCGTACGCAGAATACATGAGATGTTCGATACT
CGTGAGCTGGTAGGTAATGAAAGTGCAAGCGAAGTGCAAAAAATGGATGA
TATTTTCGAACCGTTTCGGCTTTCAACAGCTCGTACAAAGTTCAATAAGA
TAAGATCCAAAAACCTGGGAGTATTGCGTAAGTTCATAACAAATTTTTGT
TTACTGTGTTCCTGTGCATAACTAATTTTCATTCAACGAAAATCCCGGTT
GCCAATAAACACGGAGTGCTCTGCCGGGGAACCACCGAAGAAGGGACAGA
TCGAACCCACTAGTGATGTTCTGGAAATCTCGGACTCAGAGAAGGAGGTT
GACGATTCTACTGTCTTTTGCAGAAATTCTGAATTCAGTCCTCTTTTGTT
ACAATCAATTTGGGAAGATGAAGACTCAACAGTGCAATTTATTACTCTGG
CAATAGTGTTGCCGTCTGGAATTAAAGTAGAGCAAATCAGTAGCCAAGTG
GTAAGCAATGGTCGGAAATTCGAAATAATTGTAGAATGGCCTCAGCCTAT
GATGGATGTGAAGTTTATGCACAAGGCGTGGCTAAATAAGCAATTTGACC
CTATGAAGGGCTACCATCCTAAAGTTCTTGGATTTCAGAAAGCTTTGAAA
AGTTTAAGAAGCTCATCGGTTCAGACGGTAACTTTGACTTGCCGTATTTC
GTCACCGTTTTCTGTTCAAACTCACATTCCAAAACGCCAGATTCTAAGCT
TTTCTGATGGAACAAATATCCTCTATGTCGATTTAAAGGCTCCTGATGAC
AAGTATATGAAGAAAGAAGACATTATTTGCATTGAAGTGAACTAG
back to top

Coding sequence (CDS) from alignment at tig00025321_pilon:663726..665070+

>Gchil7725.t1 ID=Gchil7725.t1|Name=Gchil7725.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=606bp|location=Sequence derived from alignment at tig00025321_pilon:663726..665070+ (Gracilaria chilensis NLEC103_M9 male)
ATGAAAAAGTCGAAGGCGGGAAACGATTGCTCTGCCGGGGAACCACCGAA
GAAGGGACAGATCGAACCCACTAGTGATGTTCTGGAAATCTCGGACTCAG
AGAAGGAGGTTGACGATTCTACTGTCTTTTGCAGAAATTCTGAATTCAGT
CCTCTTTTGTTACAATCAATTTGGGAAGATGAAGACTCAACAGTGCAATT
TATTACTCTGGCAATAGTGTTGCCGTCTGGAATTAAAGTAGAGCAAATCA
GTAGCCAAGTGGTAAGCAATGGTCGGAAATTCGAAATAATTGTAGAATGG
CCTCAGCCTATGATGGATGTGAAGTTTATGCACAAGGCGTGGCTAAATAA
GCAATTTGACCCTATGAAGGGCTACCATCCTAAAGTTCTTGGATTTCAGA
AAGCTTTGAAAAGTTTAAGAAGCTCATCGGTTCAGACGGTAACTTTGACT
TGCCGTATTTCGTCACCGTTTTCTGTTCAAACTCACATTCCAAAACGCCA
GATTCTAAGCTTTTCTGATGGAACAAATATCCTCTATGTCGATTTAAAGG
CTCCTGATGACAAGTATATGAAGAAAGAAGACATTATTTGCATTGAAGTG
AACTAG
back to top