Gchil7719.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil7719.t1
Unique NameGchil7719.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length157
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00025321_piloncontigtig00025321_pilon:533533..534743 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7719Gchil7719Gracilaria chilensis NLEC103_M9 malegenetig00025321_pilon 533533..534743 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7719.t1Gchil7719.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00025321_pilon 533533..534743 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7719.t1.stop1Gchil7719.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00025321_pilon 533533..533535 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7719.t1.CDS1Gchil7719.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00025321_pilon 533533..533976 -
Gchil7719.t1.CDS2Gchil7719.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00025321_pilon 534717..534743 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7719.t1.exon1Gchil7719.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00025321_pilon 533533..533976 -
Gchil7719.t1.exon2Gchil7719.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00025321_pilon 534717..534743 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7719.t1.intron1Gchil7719.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00025321_pilon 533977..534716 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7719.t1.start1Gchil7719.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00025321_pilon 534741..534743 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil7719.t1 ID=Gchil7719.t1|Name=Gchil7719.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=157bp
MLRPPRRCATKASALKGEEAPERISVDGSKLRCETANTEKQEDIEDADDV
ELLSVPTERSPTSLRPQVVTQVFDPTDSDFTTSILETQDKETDIHGNEID
EEEEEVVNVMDGDVLFVNVYSVPAEKKLPSYVSSPQTHFLKPEMNPGFEE
GRQVLR*
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spliced messenger RNA

>Gchil7719.t1 ID=Gchil7719.t1|Name=Gchil7719.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=471bp|location=Sequence derived from alignment at tig00025321_pilon:533533..534743- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGCGGCCGCCGAGGAGATGTGCTACGAAAGCTTCAGCTCTGAAGGG
GGAAGAAGCTCCGGAGAGGATATCGGTCGATGGTTCTAAGTTGCGGTGTG
AAACTGCAAACACGGAGAAACAAGAAGATATAGAAGATGCTGACGATGTT
GAGCTTCTATCAGTGCCTACAGAACGCAGTCCTACTTCTCTAAGACCTCA
AGTAGTGACCCAAGTATTCGATCCAACCGATAGCGATTTCACTACATCAA
TACTAGAGACTCAGGACAAGGAAACTGATATTCATGGAAATGAAATAGAC
GAGGAAGAAGAAGAGGTCGTCAATGTCATGGATGGAGACGTTTTATTCGT
AAACGTTTACTCTGTGCCTGCTGAAAAGAAGCTGCCTTCATATGTGTCAT
CGCCTCAAACTCATTTTCTAAAGCCTGAGATGAATCCAGGTTTTGAAGAA
GGAAGACAAGTCCTAAGATGA
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protein sequence of Gchil7719.t1

>Gchil7719.t1 ID=Gchil7719.t1|Name=Gchil7719.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=157bp
MLRPPRRCATKASALKGEEAPERISVDGSKLRCETANTEKQEDIEDADDV
ELLSVPTERSPTSLRPQVVTQVFDPTDSDFTTSILETQDKETDIHGNEID
EEEEEVVNVMDGDVLFVNVYSVPAEKKLPSYVSSPQTHFLKPEMNPGFEE
GRQVLR*
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mRNA from alignment at tig00025321_pilon:533533..534743-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil7719.t1 ID=Gchil7719.t1|Name=Gchil7719.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1211bp|location=Sequence derived from alignment at tig00025321_pilon:533533..534743- (Gracilaria chilensis NLEC103_M9 male)
ATGCTGCGGCCGCCGAGGAGATGTGCTGTCGATGTGTGCAATTCCGGGAA
AGAAACCCTTAGTTTCATTGTGAAACCGACGAAGCTTCGAAATGTGCATG
ACATCGTGTGCCCTCCGTATGGTAAGAGGCGACTCGACTCGAAATTTCCC
GACCAGTTCGTTCCCAAACACGAAAACGAACGATAAAATGTGACAGACAC
TTCAAAAGTAGTGAAGAACGGCATTTTAGGAAAAAAACAGTGAGTCGCAG
CTCCAGATCAGCAACTTTGAAAGAACCGTCACAGCGAAAAAGATCAGCTG
CCTCATAGTGGGAGGACATTACCTCTGTGATTGTCAACATATGGGTGCCG
TGGATCATCAGCCGGAGTGATTTACTATCTACATGTTAACAAACACGTGG
TAGTATTAGACGATTTACCCCAAACAAATTCTCGCATAGTAATGGTAGAC
AGAAGTTATAGGTGCAAATCTGTCCTTCTTGCGTACAAACTGCACGAGAT
TTGGTCACCACTTCTGGTAGAAAAGCCATTTCCCACGAGTTGGTCCATAA
TTTTAAGGATGATACGACTGTTCTCATGGATGCTGTTGTGTTTGTTTTTG
CAGTTGCGGTTATTTTTATTGTTGTAACAACGGGGATGTGTGCTACGTCG
TGGTGAGGGGGGTTGCAAGCTTGGAAGATAAAAAAATGGAGAAAGTTCTA
GGAACTTTAAATAGCATTGGTGAGGGCGAAAGCAATTGAGAGAACTTTTT
TACTTCTGCAAATCCAGACGAAAGCTTCAGCTCTGAAGGGGGAAGAAGCT
CCGGAGAGGATATCGGTCGATGGTTCTAAGTTGCGGTGTGAAACTGCAAA
CACGGAGAAACAAGAAGATATAGAAGATGCTGACGATGTTGAGCTTCTAT
CAGTGCCTACAGAACGCAGTCCTACTTCTCTAAGACCTCAAGTAGTGACC
CAAGTATTCGATCCAACCGATAGCGATTTCACTACATCAATACTAGAGAC
TCAGGACAAGGAAACTGATATTCATGGAAATGAAATAGACGAGGAAGAAG
AAGAGGTCGTCAATGTCATGGATGGAGACGTTTTATTCGTAAACGTTTAC
TCTGTGCCTGCTGAAAAGAAGCTGCCTTCATATGTGTCATCGCCTCAAAC
TCATTTTCTAAAGCCTGAGATGAATCCAGGTTTTGAAGAAGGAAGACAAG
TCCTAAGATGA
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Coding sequence (CDS) from alignment at tig00025321_pilon:533533..534743-

>Gchil7719.t1 ID=Gchil7719.t1|Name=Gchil7719.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=471bp|location=Sequence derived from alignment at tig00025321_pilon:533533..534743- (Gracilaria chilensis NLEC103_M9 male)
ATGCTGCGGCCGCCGAGGAGATGTGCTACGAAAGCTTCAGCTCTGAAGGG
GGAAGAAGCTCCGGAGAGGATATCGGTCGATGGTTCTAAGTTGCGGTGTG
AAACTGCAAACACGGAGAAACAAGAAGATATAGAAGATGCTGACGATGTT
GAGCTTCTATCAGTGCCTACAGAACGCAGTCCTACTTCTCTAAGACCTCA
AGTAGTGACCCAAGTATTCGATCCAACCGATAGCGATTTCACTACATCAA
TACTAGAGACTCAGGACAAGGAAACTGATATTCATGGAAATGAAATAGAC
GAGGAAGAAGAAGAGGTCGTCAATGTCATGGATGGAGACGTTTTATTCGT
AAACGTTTACTCTGTGCCTGCTGAAAAGAAGCTGCCTTCATATGTGTCAT
CGCCTCAAACTCATTTTCTAAAGCCTGAGATGAATCCAGGTTTTGAAGAA
GGAAGACAAGTCCTAAGATGA
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