Gchil7716.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil7716.t1
Unique NameGchil7716.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length289
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00025321_piloncontigtig00025321_pilon:498917..499783 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog36331.EPrPI00000025374
PFAMsAIG1,MMR_HSR1
Max annot lvl121069|Pythiales
Evalue5.99e-32
EggNOG OGs28ND8@1|root,2QUYQ@2759|Eukaryota,1MI42@121069|Pythiales
Descriptionfunction. Source PGD
COG categoryT
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7716Gchil7716Gracilaria chilensis NLEC103_M9 malegenetig00025321_pilon 498917..499783 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7716.t1.start1Gchil7716.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00025321_pilon 498917..498919 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7716.t1.CDS1Gchil7716.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00025321_pilon 498917..499783 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7716.t1.exon1Gchil7716.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00025321_pilon 498917..499783 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7716.t1.stop1Gchil7716.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00025321_pilon 499781..499783 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7716.t1Gchil7716.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00025321_pilon 498917..499783 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil7716.t1 ID=Gchil7716.t1|Name=Gchil7716.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=289bp
MPHLHLHLRIYNCPSVQLNVMVLREHVIVAGNPGVGKSFILNCILGSPVF
KSGVAFGSGLTTALNSKTIDGVRYSDTPGLNDVKISRKAAREISKAFRKG
GRIKLFFVTTLEAGRLRLDDVTTMKVILDAIRDAKVDPNKKFSVIFNKCE
PEELECIKNIKTRAKIEVALMESVPAGRICYMPYLEDVAGKQSMLVKKNK
SVFKKLVEEAPVIELKNKSEFYVKSKHFEDELERISHKVRHLEAKIDYVL
SQMPKKPKGGVGRFLKTLGSKICTLVDDVFNTPMELLK*
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spliced messenger RNA

>Gchil7716.t1 ID=Gchil7716.t1|Name=Gchil7716.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=867bp|location=Sequence derived from alignment at tig00025321_pilon:498917..499783+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGCATCTCCATCTTCACTTGCGCATTTACAATTGTCCTTCTGTTCA
ACTAAACGTGATGGTGCTACGGGAGCATGTGATAGTGGCAGGAAATCCAG
GCGTCGGCAAGTCTTTCATCCTAAACTGTATTCTTGGCTCACCTGTTTTT
AAGTCGGGCGTTGCTTTCGGCAGCGGACTCACAACTGCTCTCAACTCGAA
AACAATCGATGGCGTTCGGTATTCGGACACCCCGGGGCTCAATGATGTCA
AAATTAGCCGTAAAGCAGCGCGCGAAATCTCGAAAGCGTTTAGAAAAGGA
GGCAGGATTAAGCTCTTTTTCGTTACCACTCTTGAAGCTGGCCGTTTAAG
ACTCGACGATGTTACCACTATGAAAGTGATTTTGGACGCTATTCGAGATG
CTAAAGTGGACCCAAACAAGAAGTTCTCCGTCATCTTTAACAAATGCGAA
CCGGAAGAGCTGGAGTGTATCAAGAATATCAAAACCAGAGCAAAAATCGA
AGTGGCGTTAATGGAATCAGTGCCTGCGGGACGCATTTGCTACATGCCCT
ATTTGGAGGATGTCGCAGGTAAGCAAAGTATGCTCGTCAAGAAGAATAAA
TCAGTGTTCAAGAAACTTGTGGAAGAAGCGCCTGTGATCGAACTGAAAAA
CAAATCCGAATTCTACGTAAAGTCAAAACATTTTGAAGATGAACTTGAAC
GCATAAGCCACAAAGTTCGACATTTAGAAGCAAAAATTGATTATGTGCTC
TCTCAAATGCCGAAGAAACCAAAGGGAGGAGTGGGTAGATTTCTTAAAAC
ACTCGGAAGCAAAATCTGCACTCTCGTAGATGATGTGTTCAACACGCCCA
TGGAGCTGCTCAAGTGA
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protein sequence of Gchil7716.t1

>Gchil7716.t1 ID=Gchil7716.t1|Name=Gchil7716.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=289bp
MPHLHLHLRIYNCPSVQLNVMVLREHVIVAGNPGVGKSFILNCILGSPVF
KSGVAFGSGLTTALNSKTIDGVRYSDTPGLNDVKISRKAAREISKAFRKG
GRIKLFFVTTLEAGRLRLDDVTTMKVILDAIRDAKVDPNKKFSVIFNKCE
PEELECIKNIKTRAKIEVALMESVPAGRICYMPYLEDVAGKQSMLVKKNK
SVFKKLVEEAPVIELKNKSEFYVKSKHFEDELERISHKVRHLEAKIDYVL
SQMPKKPKGGVGRFLKTLGSKICTLVDDVFNTPMELLK*
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mRNA from alignment at tig00025321_pilon:498917..499783+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil7716.t1 ID=Gchil7716.t1|Name=Gchil7716.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=867bp|location=Sequence derived from alignment at tig00025321_pilon:498917..499783+ (Gracilaria chilensis NLEC103_M9 male)
ATGCCGCATCTCCATCTTCACTTGCGCATTTACAATTGTCCTTCTGTTCA
ACTAAACGTGATGGTGCTACGGGAGCATGTGATAGTGGCAGGAAATCCAG
GCGTCGGCAAGTCTTTCATCCTAAACTGTATTCTTGGCTCACCTGTTTTT
AAGTCGGGCGTTGCTTTCGGCAGCGGACTCACAACTGCTCTCAACTCGAA
AACAATCGATGGCGTTCGGTATTCGGACACCCCGGGGCTCAATGATGTCA
AAATTAGCCGTAAAGCAGCGCGCGAAATCTCGAAAGCGTTTAGAAAAGGA
GGCAGGATTAAGCTCTTTTTCGTTACCACTCTTGAAGCTGGCCGTTTAAG
ACTCGACGATGTTACCACTATGAAAGTGATTTTGGACGCTATTCGAGATG
CTAAAGTGGACCCAAACAAGAAGTTCTCCGTCATCTTTAACAAATGCGAA
CCGGAAGAGCTGGAGTGTATCAAGAATATCAAAACCAGAGCAAAAATCGA
AGTGGCGTTAATGGAATCAGTGCCTGCGGGACGCATTTGCTACATGCCCT
ATTTGGAGGATGTCGCAGGTAAGCAAAGTATGCTCGTCAAGAAGAATAAA
TCAGTGTTCAAGAAACTTGTGGAAGAAGCGCCTGTGATCGAACTGAAAAA
CAAATCCGAATTCTACGTAAAGTCAAAACATTTTGAAGATGAACTTGAAC
GCATAAGCCACAAAGTTCGACATTTAGAAGCAAAAATTGATTATGTGCTC
TCTCAAATGCCGAAGAAACCAAAGGGAGGAGTGGGTAGATTTCTTAAAAC
ACTCGGAAGCAAAATCTGCACTCTCGTAGATGATGTGTTCAACACGCCCA
TGGAGCTGCTCAAGTGA
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Coding sequence (CDS) from alignment at tig00025321_pilon:498917..499783+

>Gchil7716.t1 ID=Gchil7716.t1|Name=Gchil7716.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=867bp|location=Sequence derived from alignment at tig00025321_pilon:498917..499783+ (Gracilaria chilensis NLEC103_M9 male)
ATGCCGCATCTCCATCTTCACTTGCGCATTTACAATTGTCCTTCTGTTCA
ACTAAACGTGATGGTGCTACGGGAGCATGTGATAGTGGCAGGAAATCCAG
GCGTCGGCAAGTCTTTCATCCTAAACTGTATTCTTGGCTCACCTGTTTTT
AAGTCGGGCGTTGCTTTCGGCAGCGGACTCACAACTGCTCTCAACTCGAA
AACAATCGATGGCGTTCGGTATTCGGACACCCCGGGGCTCAATGATGTCA
AAATTAGCCGTAAAGCAGCGCGCGAAATCTCGAAAGCGTTTAGAAAAGGA
GGCAGGATTAAGCTCTTTTTCGTTACCACTCTTGAAGCTGGCCGTTTAAG
ACTCGACGATGTTACCACTATGAAAGTGATTTTGGACGCTATTCGAGATG
CTAAAGTGGACCCAAACAAGAAGTTCTCCGTCATCTTTAACAAATGCGAA
CCGGAAGAGCTGGAGTGTATCAAGAATATCAAAACCAGAGCAAAAATCGA
AGTGGCGTTAATGGAATCAGTGCCTGCGGGACGCATTTGCTACATGCCCT
ATTTGGAGGATGTCGCAGGTAAGCAAAGTATGCTCGTCAAGAAGAATAAA
TCAGTGTTCAAGAAACTTGTGGAAGAAGCGCCTGTGATCGAACTGAAAAA
CAAATCCGAATTCTACGTAAAGTCAAAACATTTTGAAGATGAACTTGAAC
GCATAAGCCACAAAGTTCGACATTTAGAAGCAAAAATTGATTATGTGCTC
TCTCAAATGCCGAAGAAACCAAAGGGAGGAGTGGGTAGATTTCTTAAAAC
ACTCGGAAGCAAAATCTGCACTCTCGTAGATGATGTGTTCAACACGCCCA
TGGAGCTGCTCAAGTGA
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