Gchil7685.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil7685.t1
Unique Name	Gchil7685.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	546

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00025321_pilon	contig	tig00025321_pilon:42360..43997 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005706415.1
PFAMs	BING4CT,WD40
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K14768
GOs	GO:0000462,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005732,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0030490,GO:0030515,GO:0030684,GO:0030686,GO:0032040,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0043170,GO:0044085,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1990904
Evalue	1.38e-117
EggNOG OGs	KOG1272@1\|root,KOG1272@2759\|Eukaryota
Description	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
COG category	S
BRITE	ko00000,ko03009

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil7685	Gchil7685	Gracilaria chilensis NLEC103_M9 male	gene	tig00025321_pilon 42360..43997 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7685.t1.start1	Gchil7685.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00025321_pilon 42360..42362 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7685.t1.CDS1	Gchil7685.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00025321_pilon 42360..43997 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7685.t1.exon1	Gchil7685.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00025321_pilon 42360..43997 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7685.t1.stop1	Gchil7685.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00025321_pilon 43995..43997 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7685.t1	Gchil7685.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00025321_pilon 42360..43997 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00025321_pilon:42360..43997+
coding sequence from alignment at tig00025321_pilon:42360..43997+

mRNA sequence

>Gchil7685.t1 ID=Gchil7685.t1|Name=Gchil7685.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=546bp
MGRRPRPRQQIPLADVKPTARKRASRANHAAHLSYVVRMEVIDATILQTD
APGVLQPQNDLERTYHFTQQALRPQVDMATAAKADFQLRLDDSGLAANHT
ACFSRSSRSLLIASRLGHVSMVDWRSFKLRTELTLDETVRSAAFLHNDSF
FDTAQKQFVYLYDSRGLQLHVLRNRRDPDNLVFLPHHMLLASTSAQAAPH
GRLVYTDTSTGQVINEHDYAARHLRHNAATDTCANLSNGIIHLAHTSGVV
SLWSTVTGRPLVRMLTHRSAVHHVEVDPKGRYMYTTGADSVVARWDMRTY
QKVFQWSVPAHATSLCVSQRQMVAIFFGASVHVWAPFLTRAGRPLLERRT
EPYMRQTYSGSVITGLDFCPFEDVLAVCHEKGVRNMIFPGAGEPTFDTNA
PNPYETRKQRSQNEVRSLIDKLPPASIVLDPSSVGSIDRNPHERVREIRD
QQRRANLEKIDKHGAKKKQKGQNKISKRLKKVQETVVQARKLEQGHMRKE
RQKTKDLVDKIRKKDLADVKAGISAGRLWATSPLPDALKRFMRKK*

spliced messenger RNA

>Gchil7685.t1 ID=Gchil7685.t1|Name=Gchil7685.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1638bp|location=Sequence derived from alignment at tig00025321_pilon:42360..43997+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCCGTCGCCCACGCCCGCGCCAGCAGATCCCCCTCGCCGATGTGAA
GCCAACAGCGCGCAAGCGCGCCTCCCGCGCCAACCACGCCGCCCATTTAT
CGTACGTCGTGCGGATGGAAGTCATCGATGCCACCATCTTGCAAACCGAC
GCTCCCGGTGTGCTTCAGCCGCAAAACGACCTCGAGCGCACCTACCATTT
CACGCAGCAAGCGCTGCGACCACAAGTTGACATGGCTACCGCGGCCAAGG
CCGACTTCCAACTCAGACTGGACGACTCCGGTTTGGCCGCCAACCACACC
GCATGTTTTTCGCGCTCTTCCCGCTCTTTGTTGATTGCCAGTAGACTTGG
TCATGTTTCAATGGTTGATTGGCGTTCTTTCAAGCTACGAACCGAGCTAA
CGCTTGATGAAACTGTACGATCTGCTGCGTTTTTGCACAACGATTCCTTT
TTTGATACTGCCCAAAAGCAATTTGTCTACCTGTACGATTCCCGCGGATT
GCAGCTGCATGTGTTGAGGAATCGCAGAGATCCAGATAATCTTGTCTTTT
TGCCCCATCATATGTTGTTGGCGTCTACTTCTGCGCAAGCTGCACCTCAT
GGCCGTCTCGTGTACACTGATACCTCCACGGGTCAGGTCATCAACGAACA
TGATTACGCAGCTCGTCACCTGCGACACAATGCCGCCACAGACACTTGTG
CCAATTTGTCAAATGGTATCATTCACCTCGCGCACACCTCCGGAGTAGTT
TCCCTTTGGTCTACTGTAACAGGACGCCCTCTAGTGCGCATGCTCACCCA
TCGCTCCGCTGTGCATCACGTTGAAGTCGACCCTAAAGGCCGCTACATGT
ACACTACAGGAGCAGATTCGGTCGTTGCCCGCTGGGACATGCGCACGTAC
CAAAAGGTCTTCCAGTGGTCCGTTCCAGCTCATGCCACTTCGCTTTGTGT
GTCACAACGTCAAATGGTTGCAATCTTTTTTGGTGCATCCGTTCATGTCT
GGGCCCCCTTCCTCACTCGCGCTGGCCGGCCGCTTTTAGAGAGGCGCACC
GAACCGTACATGAGACAGACATATTCCGGTTCAGTCATTACTGGTCTAGA
TTTTTGTCCATTCGAAGACGTTCTTGCTGTATGTCATGAGAAAGGTGTTC
GAAACATGATTTTTCCCGGCGCCGgggagcctactttcgataccaacgcg
cccaatccgtacgaaaccagaaaacaACGTTCTCAAAACGAAGTGCGATC
TCTCATCGACAAATTGCCACCAGCGTCCATTGTGTTGGATCCATCGTCCG
TGGGCTCCATTGACCGCAACCCTCACGAGCGTGTGCGCGAAATTCGGGAC
CAGCAGCGCCGCGCGAACCTGGAGAAAATCGACAAGCACGGTGCGAAGAA
GAAACAGAAAGGACAAAACAAGATTTCCAAACGTCTAAAGAAAGTGCAAG
AAACTGTTGTGCAAGCTAGAAAGCTTGAGCAGGGGCACATGCGCAAGGAA
CGACAGAAGACAAAAGACTTGGTTGACAAGATTCGGAAGAAGGACTTGGC
CGATGTAAAAGCTGGAATTAGTGCTGGGCGGCTTTGGGCGACTTCTCCTT
TGCCGGATGCTCTAAAGCGCTTTATGAGAAAGAAGTAA

protein sequence of Gchil7685.t1

>Gchil7685.t1 ID=Gchil7685.t1|Name=Gchil7685.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=546bp
MGRRPRPRQQIPLADVKPTARKRASRANHAAHLSYVVRMEVIDATILQTD
APGVLQPQNDLERTYHFTQQALRPQVDMATAAKADFQLRLDDSGLAANHT
ACFSRSSRSLLIASRLGHVSMVDWRSFKLRTELTLDETVRSAAFLHNDSF
FDTAQKQFVYLYDSRGLQLHVLRNRRDPDNLVFLPHHMLLASTSAQAAPH
GRLVYTDTSTGQVINEHDYAARHLRHNAATDTCANLSNGIIHLAHTSGVV
SLWSTVTGRPLVRMLTHRSAVHHVEVDPKGRYMYTTGADSVVARWDMRTY
QKVFQWSVPAHATSLCVSQRQMVAIFFGASVHVWAPFLTRAGRPLLERRT
EPYMRQTYSGSVITGLDFCPFEDVLAVCHEKGVRNMIFPGAGEPTFDTNA
PNPYETRKQRSQNEVRSLIDKLPPASIVLDPSSVGSIDRNPHERVREIRD
QQRRANLEKIDKHGAKKKQKGQNKISKRLKKVQETVVQARKLEQGHMRKE
RQKTKDLVDKIRKKDLADVKAGISAGRLWATSPLPDALKRFMRKK*

mRNA from alignment at tig00025321_pilon:42360..43997+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil7685.t1 ID=Gchil7685.t1|Name=Gchil7685.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1638bp|location=Sequence derived from alignment at tig00025321_pilon:42360..43997+ (Gracilaria chilensis NLEC103_M9 male)
ATGGGCCGTCGCCCACGCCCGCGCCAGCAGATCCCCCTCGCCGATGTGAA
GCCAACAGCGCGCAAGCGCGCCTCCCGCGCCAACCACGCCGCCCATTTAT
CGTACGTCGTGCGGATGGAAGTCATCGATGCCACCATCTTGCAAACCGAC
GCTCCCGGTGTGCTTCAGCCGCAAAACGACCTCGAGCGCACCTACCATTT
CACGCAGCAAGCGCTGCGACCACAAGTTGACATGGCTACCGCGGCCAAGG
CCGACTTCCAACTCAGACTGGACGACTCCGGTTTGGCCGCCAACCACACC
GCATGTTTTTCGCGCTCTTCCCGCTCTTTGTTGATTGCCAGTAGACTTGG
TCATGTTTCAATGGTTGATTGGCGTTCTTTCAAGCTACGAACCGAGCTAA
CGCTTGATGAAACTGTACGATCTGCTGCGTTTTTGCACAACGATTCCTTT
TTTGATACTGCCCAAAAGCAATTTGTCTACCTGTACGATTCCCGCGGATT
GCAGCTGCATGTGTTGAGGAATCGCAGAGATCCAGATAATCTTGTCTTTT
TGCCCCATCATATGTTGTTGGCGTCTACTTCTGCGCAAGCTGCACCTCAT
GGCCGTCTCGTGTACACTGATACCTCCACGGGTCAGGTCATCAACGAACA
TGATTACGCAGCTCGTCACCTGCGACACAATGCCGCCACAGACACTTGTG
CCAATTTGTCAAATGGTATCATTCACCTCGCGCACACCTCCGGAGTAGTT
TCCCTTTGGTCTACTGTAACAGGACGCCCTCTAGTGCGCATGCTCACCCA
TCGCTCCGCTGTGCATCACGTTGAAGTCGACCCTAAAGGCCGCTACATGT
ACACTACAGGAGCAGATTCGGTCGTTGCCCGCTGGGACATGCGCACGTAC
CAAAAGGTCTTCCAGTGGTCCGTTCCAGCTCATGCCACTTCGCTTTGTGT
GTCACAACGTCAAATGGTTGCAATCTTTTTTGGTGCATCCGTTCATGTCT
GGGCCCCCTTCCTCACTCGCGCTGGCCGGCCGCTTTTAGAGAGGCGCACC
GAACCGTACATGAGACAGACATATTCCGGTTCAGTCATTACTGGTCTAGA
TTTTTGTCCATTCGAAGACGTTCTTGCTGTATGTCATGAGAAAGGTGTTC
GAAACATGATTTTTCCCGGCGCCGgggagcctactttcgataccaacgcg
cccaatccgtacgaaaccagaaaacaACGTTCTCAAAACGAAGTGCGATC
TCTCATCGACAAATTGCCACCAGCGTCCATTGTGTTGGATCCATCGTCCG
TGGGCTCCATTGACCGCAACCCTCACGAGCGTGTGCGCGAAATTCGGGAC
CAGCAGCGCCGCGCGAACCTGGAGAAAATCGACAAGCACGGTGCGAAGAA
GAAACAGAAAGGACAAAACAAGATTTCCAAACGTCTAAAGAAAGTGCAAG
AAACTGTTGTGCAAGCTAGAAAGCTTGAGCAGGGGCACATGCGCAAGGAA
CGACAGAAGACAAAAGACTTGGTTGACAAGATTCGGAAGAAGGACTTGGC
CGATGTAAAAGCTGGAATTAGTGCTGGGCGGCTTTGGGCGACTTCTCCTT
TGCCGGATGCTCTAAAGCGCTTTATGAGAAAGAAGTAA

Coding sequence (CDS) from alignment at tig00025321_pilon:42360..43997+

>Gchil7685.t1 ID=Gchil7685.t1|Name=Gchil7685.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1638bp|location=Sequence derived from alignment at tig00025321_pilon:42360..43997+ (Gracilaria chilensis NLEC103_M9 male)
ATGGGCCGTCGCCCACGCCCGCGCCAGCAGATCCCCCTCGCCGATGTGAA
GCCAACAGCGCGCAAGCGCGCCTCCCGCGCCAACCACGCCGCCCATTTAT
CGTACGTCGTGCGGATGGAAGTCATCGATGCCACCATCTTGCAAACCGAC
GCTCCCGGTGTGCTTCAGCCGCAAAACGACCTCGAGCGCACCTACCATTT
CACGCAGCAAGCGCTGCGACCACAAGTTGACATGGCTACCGCGGCCAAGG
CCGACTTCCAACTCAGACTGGACGACTCCGGTTTGGCCGCCAACCACACC
GCATGTTTTTCGCGCTCTTCCCGCTCTTTGTTGATTGCCAGTAGACTTGG
TCATGTTTCAATGGTTGATTGGCGTTCTTTCAAGCTACGAACCGAGCTAA
CGCTTGATGAAACTGTACGATCTGCTGCGTTTTTGCACAACGATTCCTTT
TTTGATACTGCCCAAAAGCAATTTGTCTACCTGTACGATTCCCGCGGATT
GCAGCTGCATGTGTTGAGGAATCGCAGAGATCCAGATAATCTTGTCTTTT
TGCCCCATCATATGTTGTTGGCGTCTACTTCTGCGCAAGCTGCACCTCAT
GGCCGTCTCGTGTACACTGATACCTCCACGGGTCAGGTCATCAACGAACA
TGATTACGCAGCTCGTCACCTGCGACACAATGCCGCCACAGACACTTGTG
CCAATTTGTCAAATGGTATCATTCACCTCGCGCACACCTCCGGAGTAGTT
TCCCTTTGGTCTACTGTAACAGGACGCCCTCTAGTGCGCATGCTCACCCA
TCGCTCCGCTGTGCATCACGTTGAAGTCGACCCTAAAGGCCGCTACATGT
ACACTACAGGAGCAGATTCGGTCGTTGCCCGCTGGGACATGCGCACGTAC
CAAAAGGTCTTCCAGTGGTCCGTTCCAGCTCATGCCACTTCGCTTTGTGT
GTCACAACGTCAAATGGTTGCAATCTTTTTTGGTGCATCCGTTCATGTCT
GGGCCCCCTTCCTCACTCGCGCTGGCCGGCCGCTTTTAGAGAGGCGCACC
GAACCGTACATGAGACAGACATATTCCGGTTCAGTCATTACTGGTCTAGA
TTTTTGTCCATTCGAAGACGTTCTTGCTGTATGTCATGAGAAAGGTGTTC
GAAACATGATTTTTCCCGGCGCCGgggagcctactttcgataccaacgcg
cccaatccgtacgaaaccagaaaacaACGTTCTCAAAACGAAGTGCGATC
TCTCATCGACAAATTGCCACCAGCGTCCATTGTGTTGGATCCATCGTCCG
TGGGCTCCATTGACCGCAACCCTCACGAGCGTGTGCGCGAAATTCGGGAC
CAGCAGCGCCGCGCGAACCTGGAGAAAATCGACAAGCACGGTGCGAAGAA
GAAACAGAAAGGACAAAACAAGATTTCCAAACGTCTAAAGAAAGTGCAAG
AAACTGTTGTGCAAGCTAGAAAGCTTGAGCAGGGGCACATGCGCAAGGAA
CGACAGAAGACAAAAGACTTGGTTGACAAGATTCGGAAGAAGGACTTGGC
CGATGTAAAAGCTGGAATTAGTGCTGGGCGGCTTTGGGCGACTTCTCCTT
TGCCGGATGCTCTAAAGCGCTTTATGAGAAAGAAGTAA