Gchil7683.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil7683.t1
Unique NameGchil7683.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length159
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00025321_piloncontigtig00025321_pilon:17363..17839 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7683Gchil7683Gracilaria chilensis NLEC103_M9 malegenetig00025321_pilon 17363..17839 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7683.t1.start1Gchil7683.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00025321_pilon 17363..17365 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7683.t1.CDS1Gchil7683.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00025321_pilon 17363..17839 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7683.t1.exon1Gchil7683.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00025321_pilon 17363..17839 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7683.t1.stop1Gchil7683.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00025321_pilon 17837..17839 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7683.t1Gchil7683.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00025321_pilon 17363..17839 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil7683.t1 ID=Gchil7683.t1|Name=Gchil7683.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=159bp
MEKSFVIDVTSIVAAVHNATYSAVQYGLQSYQISSLTEDINEFLLRVDGT
HLRGDPKSSPGDGIEHCFFELANAPQGVSKIVLIGDGRHNHGRDPMISAR
IFKQFFGENGSLSVINVGHSNLEYMTDLANAGIGDVFLIDDFIELFILID
DIVFDICG*
back to top

spliced messenger RNA

>Gchil7683.t1 ID=Gchil7683.t1|Name=Gchil7683.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=477bp|location=Sequence derived from alignment at tig00025321_pilon:17363..17839+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAAAGTCCTTTGTCATTGATGTTACTTCTATAGTAGCAGCCGTCCA
TAATGCAACGTACTCTGCGGTGCAGTACGGCCTCCAAAGTTACCAAATAT
CCTCTCTAACTGAAGACATAAACGAATTTCTGCTCAGGGTTGATGGCACC
CATTTGCGGGGAGATCCAAAATCATCTCCTGGTGATGGCATTGAGCACTG
CTTCTTTGAGTTGGCAAACGCACCACAGGGTGTTTCCAAAATAGTATTGA
TTGGGGATGGGCGACACAATCATGGTCGTGATCCAATGATTTCAGCTCGT
ATCTTCAAACAGTTTTTTGGGGAAAATGGTTCGCTGAGTGTGATAAATGT
CGGACATAGCAATTTGGAGTACATGACGGATCTTGCTAATGCCGGTATCG
GGGATGTTTTTCTTATTGACGACTTTATTGAACTTTTCATTTTAATTGAT
GATATTGTGTTTGACATTTGTGGATAA
back to top

protein sequence of Gchil7683.t1

>Gchil7683.t1 ID=Gchil7683.t1|Name=Gchil7683.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=159bp
MEKSFVIDVTSIVAAVHNATYSAVQYGLQSYQISSLTEDINEFLLRVDGT
HLRGDPKSSPGDGIEHCFFELANAPQGVSKIVLIGDGRHNHGRDPMISAR
IFKQFFGENGSLSVINVGHSNLEYMTDLANAGIGDVFLIDDFIELFILID
DIVFDICG*
back to top

mRNA from alignment at tig00025321_pilon:17363..17839+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil7683.t1 ID=Gchil7683.t1|Name=Gchil7683.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=477bp|location=Sequence derived from alignment at tig00025321_pilon:17363..17839+ (Gracilaria chilensis NLEC103_M9 male)
ATGGAAAAGTCCTTTGTCATTGATGTTACTTCTATAGTAGCAGCCGTCCA
TAATGCAACGTACTCTGCGGTGCAGTACGGCCTCCAAAGTTACCAAATAT
CCTCTCTAACTGAAGACATAAACGAATTTCTGCTCAGGGTTGATGGCACC
CATTTGCGGGGAGATCCAAAATCATCTCCTGGTGATGGCATTGAGCACTG
CTTCTTTGAGTTGGCAAACGCACCACAGGGTGTTTCCAAAATAGTATTGA
TTGGGGATGGGCGACACAATCATGGTCGTGATCCAATGATTTCAGCTCGT
ATCTTCAAACAGTTTTTTGGGGAAAATGGTTCGCTGAGTGTGATAAATGT
CGGACATAGCAATTTGGAGTACATGACGGATCTTGCTAATGCCGGTATCG
GGGATGTTTTTCTTATTGACGACTTTATTGAACTTTTCATTTTAATTGAT
GATATTGTGTTTGACATTTGTGGATAA
back to top

Coding sequence (CDS) from alignment at tig00025321_pilon:17363..17839+

>Gchil7683.t1 ID=Gchil7683.t1|Name=Gchil7683.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=477bp|location=Sequence derived from alignment at tig00025321_pilon:17363..17839+ (Gracilaria chilensis NLEC103_M9 male)
ATGGAAAAGTCCTTTGTCATTGATGTTACTTCTATAGTAGCAGCCGTCCA
TAATGCAACGTACTCTGCGGTGCAGTACGGCCTCCAAAGTTACCAAATAT
CCTCTCTAACTGAAGACATAAACGAATTTCTGCTCAGGGTTGATGGCACC
CATTTGCGGGGAGATCCAAAATCATCTCCTGGTGATGGCATTGAGCACTG
CTTCTTTGAGTTGGCAAACGCACCACAGGGTGTTTCCAAAATAGTATTGA
TTGGGGATGGGCGACACAATCATGGTCGTGATCCAATGATTTCAGCTCGT
ATCTTCAAACAGTTTTTTGGGGAAAATGGTTCGCTGAGTGTGATAAATGT
CGGACATAGCAATTTGGAGTACATGACGGATCTTGCTAATGCCGGTATCG
GGGATGTTTTTCTTATTGACGACTTTATTGAACTTTTCATTTTAATTGAT
GATATTGTGTTTGACATTTGTGGATAA
back to top