Gchil7611.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil7611.t1
Unique NameGchil7611.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length355
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000007_piloncontigtig00000007_pilon:2203964..2205131 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704343.1
Preferred nameUXS1
PFAMsGDP_Man_Dehyd
Max annot lvl2759|Eukaryota
KEGG rclassRC00508
KEGG koko:K08678
KEGG ReactionR01384
KEGG Pathwayko00520,ko01100,map00520,map01100
KEGG ModuleM00361
GOsGO:0000139,GO:0000166,GO:0001501,GO:0001503,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005794,GO:0005802,GO:0005829,GO:0005886,GO:0005975,GO:0005996,GO:0006022,GO:0006023,GO:0006024,GO:0006029,GO:0006082,GO:0006139,GO:0006725,GO:0006790,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0008460,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009225,GO:0009226,GO:0009888,GO:0009987,GO:0012505,GO:0015012,GO:0016020,GO:0016043,GO:0016829,GO:0016830,GO:0016831,GO:0016835,GO:0016836,GO:0018130,GO:0019305,GO:0019321,GO:0019438,GO:0019538,GO:0022607,GO:0030166,GO:0030198,GO:0030201,GO:0030203,GO:0030204,GO:0030206,GO:0031090,GO:0031410,GO:0031982,GO:0031984,GO:0032501,GO:0032502,GO:0034641,GO:0034645,GO:0034654,GO:0036094,GO:0042732,GO:0042802,GO:0042803,GO:0043062,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044272,GO:0044281,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0046383,GO:0046483,GO:0046983,GO:0048037,GO:0048040,GO:0048513,GO:0048731,GO:0048856,GO:0050650,GO:0050654,GO:0050662,GO:0051216,GO:0051259,GO:0051262,GO:0051287,GO:0055086,GO:0061448,GO:0065003,GO:0070403,GO:0071704,GO:0071840,GO:0071944,GO:0097159,GO:0097708,GO:0098588,GO:0098791,GO:1901135,GO:1901137,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1903510
Evalue4.91e-189
EggNOG OGsCOG0451@1|root,KOG1429@2759|Eukaryota
EC4.1.1.35
DescriptionUDP-glucuronate decarboxylase activity
COG categoryGM
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7611Gchil7611Gracilaria chilensis NLEC103_M9 malegenetig00000007_pilon 2203964..2205131 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7611.t1Gchil7611.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000007_pilon 2203964..2205131 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7611.t1.start1Gchil7611.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000007_pilon 2203964..2203966 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7611.t1.CDS1Gchil7611.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000007_pilon 2203964..2204037 +
Gchil7611.t1.CDS2Gchil7611.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000007_pilon 2204141..2205131 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7611.t1.exon1Gchil7611.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000007_pilon 2203964..2204037 +
Gchil7611.t1.exon2Gchil7611.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000007_pilon 2204141..2205131 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7611.t1.intron1Gchil7611.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000007_pilon 2204038..2204140 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7611.t1.stop1Gchil7611.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000007_pilon 2205129..2205131 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil7611.t1 ID=Gchil7611.t1|Name=Gchil7611.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=355bp
MANEKMVDVQRPANGGEAIDNLAMWRGLNAPNRPDTHKRILVTGGAGFIG
SHLVDRLMEAGNEVIVVDSLFTGKKDNFEKWRLHPRFEFFRHDVTEPFNA
EVDQIYHLACPASPVHYKYNAIKTIKTNVLGTINMLGLAKRTGARFLLAS
TSEVYGDPEIHPQTEEYWGNVNPIGVRSCYDEGKRVSETLSFDYNRQHGV
EIRVVRIFNTYGPRMVLNDGRVVSNFVGQAIRGEPLTIYGDGLQTRSFCY
VSDLVDGMIRMMNQNEHVGPFNMGNPGEFTMRELAEIVKDLVNPKLDIKF
LPATPDDPMKRKPDITKSKTHLGWEPKVALRDGLVPMVEDFKARILGNGI
DENE*
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spliced messenger RNA

>Gchil7611.t1 ID=Gchil7611.t1|Name=Gchil7611.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1065bp|location=Sequence derived from alignment at tig00000007_pilon:2203964..2205131+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGAACGAGAAAATGGTCGACGTTCAGCGCCCAGCCAATGGCGGCGA
GGCCATCGATAATCTCGCTATGTGGCGTGGTCTAAATGCCCCGAACCGCC
CAGATACTCACAAACGTATACTCGTTACTGGCGGTGCCGGATTTATAGGT
TCCCATCTCGTAGATCGTCTCATGGAAGCGGGAAATGAGGTCATTGTTGT
TGACTCCCTTTTTACTGGAAAGAAAGACAACTTTGAAAAGTGGCGTCTGC
ACCCGCGGTTCGAATTTTTCCGCCACGACGTTACGGAGCCGTTCAACGCA
GAAGTTGATCAGATCTATCACTTGGCCTGTCCAGCTTCTCCAGTGCATTA
CAAGTACAACGCCATCAAGACGATCAAAACAAATGTTCTTGGTACAATCA
ATATGCTCGGTCTCGCTAAGAGAACGGGTGCTCGCTTCTTATTGGCATCC
ACTTCGGAGGTGTATGGAGATCCTGAGATCCACCCTCAAACCGAGGAGTA
CTGGGGCAATGTCAATCCCATTGGTGTACGTTCGTGTTATGACGAGGGCA
AACGCGTTTCCGAAACCTTGAGTTTTGATTATAACAGGCAGCATGGCGTC
GAAATCCGAGTCGTTCGTATCTTTAACACATACGGGCCGCGTATGGTTCT
CAACGATGGCAGAGTAGTTTCTAACTTCGTGGGACAAGCCATCCGTGGGG
AGCCTCTCACCATTTACGGCGATGGTCTCCAAACCCGTAGTTTTTGCTAT
GTCTCTGATTTGGTTGACGGAATGATTAGAATGATGAATCAAAACGAACA
TGTCGGCCCATTTAACATGGGTAATCCTGGTGAGTTCACCATGCGAGAAC
TGGCTGAAATCGTGAAAGACCTTGTCAACCCAAAATTGGACATAAAATTC
TTACCTGCCACTCCGGACGATCCAATGAAGCGCAAACCGGACATAACGAA
ATCCAAAACTCACCTTGGATGGGAACCTAAGGTCGCTCTCAGAGATGGTT
TAGTGCCGATGGTTGAAGACTTCAAAGCACGCATTTTGGGAAATGGCATC
GACGAAAACGAGTAG
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protein sequence of Gchil7611.t1

>Gchil7611.t1 ID=Gchil7611.t1|Name=Gchil7611.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=355bp
MANEKMVDVQRPANGGEAIDNLAMWRGLNAPNRPDTHKRILVTGGAGFIG
SHLVDRLMEAGNEVIVVDSLFTGKKDNFEKWRLHPRFEFFRHDVTEPFNA
EVDQIYHLACPASPVHYKYNAIKTIKTNVLGTINMLGLAKRTGARFLLAS
TSEVYGDPEIHPQTEEYWGNVNPIGVRSCYDEGKRVSETLSFDYNRQHGV
EIRVVRIFNTYGPRMVLNDGRVVSNFVGQAIRGEPLTIYGDGLQTRSFCY
VSDLVDGMIRMMNQNEHVGPFNMGNPGEFTMRELAEIVKDLVNPKLDIKF
LPATPDDPMKRKPDITKSKTHLGWEPKVALRDGLVPMVEDFKARILGNGI
DENE*
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mRNA from alignment at tig00000007_pilon:2203964..2205131+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil7611.t1 ID=Gchil7611.t1|Name=Gchil7611.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1168bp|location=Sequence derived from alignment at tig00000007_pilon:2203964..2205131+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCGAACGAGAAAATGGTCGACGTTCAGCGCCCAGCCAATGGCGGCGA
GGCCATCGATAATCTCGCTATGTGGTACGCTCACCATCAACCCCTGTCCC
CCGCCTCCATCTCGCCCCCATTTTGTCCAACGCTGCCTAACATTTTTATA
TCGCAATCGACTCCCATCAACGCGTAGGCGTGGTCTAAATGCCCCGAACC
GCCCAGATACTCACAAACGTATACTCGTTACTGGCGGTGCCGGATTTATA
GGTTCCCATCTCGTAGATCGTCTCATGGAAGCGGGAAATGAGGTCATTGT
TGTTGACTCCCTTTTTACTGGAAAGAAAGACAACTTTGAAAAGTGGCGTC
TGCACCCGCGGTTCGAATTTTTCCGCCACGACGTTACGGAGCCGTTCAAC
GCAGAAGTTGATCAGATCTATCACTTGGCCTGTCCAGCTTCTCCAGTGCA
TTACAAGTACAACGCCATCAAGACGATCAAAACAAATGTTCTTGGTACAA
TCAATATGCTCGGTCTCGCTAAGAGAACGGGTGCTCGCTTCTTATTGGCA
TCCACTTCGGAGGTGTATGGAGATCCTGAGATCCACCCTCAAACCGAGGA
GTACTGGGGCAATGTCAATCCCATTGGTGTACGTTCGTGTTATGACGAGG
GCAAACGCGTTTCCGAAACCTTGAGTTTTGATTATAACAGGCAGCATGGC
GTCGAAATCCGAGTCGTTCGTATCTTTAACACATACGGGCCGCGTATGGT
TCTCAACGATGGCAGAGTAGTTTCTAACTTCGTGGGACAAGCCATCCGTG
GGGAGCCTCTCACCATTTACGGCGATGGTCTCCAAACCCGTAGTTTTTGC
TATGTCTCTGATTTGGTTGACGGAATGATTAGAATGATGAATCAAAACGA
ACATGTCGGCCCATTTAACATGGGTAATCCTGGTGAGTTCACCATGCGAG
AACTGGCTGAAATCGTGAAAGACCTTGTCAACCCAAAATTGGACATAAAA
TTCTTACCTGCCACTCCGGACGATCCAATGAAGCGCAAACCGGACATAAC
GAAATCCAAAACTCACCTTGGATGGGAACCTAAGGTCGCTCTCAGAGATG
GTTTAGTGCCGATGGTTGAAGACTTCAAAGCACGCATTTTGGGAAATGGC
ATCGACGAAAACGAGTAG
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Coding sequence (CDS) from alignment at tig00000007_pilon:2203964..2205131+

>Gchil7611.t1 ID=Gchil7611.t1|Name=Gchil7611.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1065bp|location=Sequence derived from alignment at tig00000007_pilon:2203964..2205131+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCGAACGAGAAAATGGTCGACGTTCAGCGCCCAGCCAATGGCGGCGA
GGCCATCGATAATCTCGCTATGTGGCGTGGTCTAAATGCCCCGAACCGCC
CAGATACTCACAAACGTATACTCGTTACTGGCGGTGCCGGATTTATAGGT
TCCCATCTCGTAGATCGTCTCATGGAAGCGGGAAATGAGGTCATTGTTGT
TGACTCCCTTTTTACTGGAAAGAAAGACAACTTTGAAAAGTGGCGTCTGC
ACCCGCGGTTCGAATTTTTCCGCCACGACGTTACGGAGCCGTTCAACGCA
GAAGTTGATCAGATCTATCACTTGGCCTGTCCAGCTTCTCCAGTGCATTA
CAAGTACAACGCCATCAAGACGATCAAAACAAATGTTCTTGGTACAATCA
ATATGCTCGGTCTCGCTAAGAGAACGGGTGCTCGCTTCTTATTGGCATCC
ACTTCGGAGGTGTATGGAGATCCTGAGATCCACCCTCAAACCGAGGAGTA
CTGGGGCAATGTCAATCCCATTGGTGTACGTTCGTGTTATGACGAGGGCA
AACGCGTTTCCGAAACCTTGAGTTTTGATTATAACAGGCAGCATGGCGTC
GAAATCCGAGTCGTTCGTATCTTTAACACATACGGGCCGCGTATGGTTCT
CAACGATGGCAGAGTAGTTTCTAACTTCGTGGGACAAGCCATCCGTGGGG
AGCCTCTCACCATTTACGGCGATGGTCTCCAAACCCGTAGTTTTTGCTAT
GTCTCTGATTTGGTTGACGGAATGATTAGAATGATGAATCAAAACGAACA
TGTCGGCCCATTTAACATGGGTAATCCTGGTGAGTTCACCATGCGAGAAC
TGGCTGAAATCGTGAAAGACCTTGTCAACCCAAAATTGGACATAAAATTC
TTACCTGCCACTCCGGACGATCCAATGAAGCGCAAACCGGACATAACGAA
ATCCAAAACTCACCTTGGATGGGAACCTAAGGTCGCTCTCAGAGATGGTT
TAGTGCCGATGGTTGAAGACTTCAAAGCACGCATTTTGGGAAATGGCATC
GACGAAAACGAGTAG
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