Gchil7602.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil7602.t1
Unique NameGchil7602.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length346
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000007_piloncontigtig00000007_pilon:2181472..2182509 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2880.D7FN95
PFAMsIon_trans_2
Max annot lvl2759|Eukaryota
KEGG koko:K05389
KEGG TC1.A.1.7
Evalue7.5e-40
EggNOG OGsKOG1418@1|root,KOG1418@2759|Eukaryota
Descriptionpotassium channel activity
COG categoryU
BRITEko00000,ko04040
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7602Gchil7602Gracilaria chilensis NLEC103_M9 malegenetig00000007_pilon 2181472..2182509 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7602.t1.stop1Gchil7602.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000007_pilon 2181472..2181474 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7602.t1.CDS1Gchil7602.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000007_pilon 2181472..2182509 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7602.t1.exon1Gchil7602.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000007_pilon 2181472..2182509 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7602.t1.start1Gchil7602.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000007_pilon 2182507..2182509 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7602.t1Gchil7602.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000007_pilon 2181472..2182509 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil7602.t1 ID=Gchil7602.t1|Name=Gchil7602.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=346bp
MNASENTPLLALSVGQFLQNASRSVWLSIKSESGRYRALLRTWRRLEEGE
QKEDVEDVLRDIQKDEHLNGQMLVFSILAILFHLTSGIFVLHWIEGWTLY
DSAYFCVVTTTTVGYGDITPKKGAAKLFVVYYSLVSIAIVSLLLSYVVGT
LVDRQEESLLHALGEDESDNWVESPSLLGAMEKDELILSFVWVLVIIVVG
VAVFMRLEDLTLLDAVYVTIISTSTVGFGDFEPRRKATKLIMTVWLCFST
VCMAKLVGDIAHAFAKMKQRAATRRLLGATLDTRSLLYIDRDQDRRVSKA
EFLVEMLTRTGRVEDQEMNKLLAMFDELDANKDGYISAEECQPDL*
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spliced messenger RNA

>Gchil7602.t1 ID=Gchil7602.t1|Name=Gchil7602.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1038bp|location=Sequence derived from alignment at tig00000007_pilon:2181472..2182509- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACGCTTCAGAAAACACACCATTGTTGGCGCTATCCGTCGGGCAGTT
CTTGCAAAATGCTTCTCGTTCAGTATGGCTTTCGATAAAGTCTGAGTCAG
GAAGATATAGAGCACTTCTTCGTACTTGGCGGCGTCTAGAAGAAGGCGAG
CAGAAAGAGGATGTTGAGGATGTCTTACGAGACATTCAAAAGGACGAACA
TCTCAATGGGCAAATGCTGGTGTTTTCTATACTTGCGATACTGTTTCATC
TGACAAGTGGTATTTTCGTGTTACATTGGATTGAGGGGTGGACACTCTAC
GATTCAGCGTACTTTTGTGTAGTGACCACCACTACCGTCGGATATGGTGA
CATCACTCCGAAAAAGGGGGCGGCGAAGTTATTTGTCGTGTATTATTCGC
TGGTTTCCATTGCAATCGTCTCATTGCTACTCTCTTACGTAGTTGGTACA
CTAGTTGACCGACAAGAAGAATCGCTGCTCCACGCACTTGGCGAGGATGA
ATCTGACAATTGGGTAGAGTCTCCAAGTCTGTTGGGGGCAATGGAGAAGG
ATGAGCTAATATTGTCGTTTGTATGGGTGTTAGTTATCATTGTTGTCGGT
GTTGCCGTTTTCATGCGACTTGAAGACTTAACTCTGTTGGACGCCGTCTA
TGTGACAATAATTTCAACTTCTACAGTTGGGTTTGGCGATTTCGAACCCA
GGCGAAAGGCAACAAAGCTGATCATGACGGTTTGGCTTTGCTTCTCGACC
GTTTGCATGGCCAAATTAGTCGGAGACATTGCGCACGCGTTTGCAAAGAT
GAAGCAAAGGGCCGCTACTCGAAGACTACTCGGGGCTACTCTTGATACTA
GAAGCCTTTTATACATAGATCGAGATCAGGATAGGCGCGTGAGCAAGGCA
GAGTTCCTTGTTGAGATGCTTACGCGAACTGGGAGGGTGGAAGACCAAGA
GATGAATAAGTTGCTTGCCATGTTTGACGAACTGGATGCAAACAAAGACG
GATATATTTCAGCTGAAGAGTGCCAACCGGACTTGTAA
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protein sequence of Gchil7602.t1

>Gchil7602.t1 ID=Gchil7602.t1|Name=Gchil7602.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=346bp
MNASENTPLLALSVGQFLQNASRSVWLSIKSESGRYRALLRTWRRLEEGE
QKEDVEDVLRDIQKDEHLNGQMLVFSILAILFHLTSGIFVLHWIEGWTLY
DSAYFCVVTTTTVGYGDITPKKGAAKLFVVYYSLVSIAIVSLLLSYVVGT
LVDRQEESLLHALGEDESDNWVESPSLLGAMEKDELILSFVWVLVIIVVG
VAVFMRLEDLTLLDAVYVTIISTSTVGFGDFEPRRKATKLIMTVWLCFST
VCMAKLVGDIAHAFAKMKQRAATRRLLGATLDTRSLLYIDRDQDRRVSKA
EFLVEMLTRTGRVEDQEMNKLLAMFDELDANKDGYISAEECQPDL*
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mRNA from alignment at tig00000007_pilon:2181472..2182509-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil7602.t1 ID=Gchil7602.t1|Name=Gchil7602.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1038bp|location=Sequence derived from alignment at tig00000007_pilon:2181472..2182509- (Gracilaria chilensis NLEC103_M9 male)
ATGAACGCTTCAGAAAACACACCATTGTTGGCGCTATCCGTCGGGCAGTT
CTTGCAAAATGCTTCTCGTTCAGTATGGCTTTCGATAAAGTCTGAGTCAG
GAAGATATAGAGCACTTCTTCGTACTTGGCGGCGTCTAGAAGAAGGCGAG
CAGAAAGAGGATGTTGAGGATGTCTTACGAGACATTCAAAAGGACGAACA
TCTCAATGGGCAAATGCTGGTGTTTTCTATACTTGCGATACTGTTTCATC
TGACAAGTGGTATTTTCGTGTTACATTGGATTGAGGGGTGGACACTCTAC
GATTCAGCGTACTTTTGTGTAGTGACCACCACTACCGTCGGATATGGTGA
CATCACTCCGAAAAAGGGGGCGGCGAAGTTATTTGTCGTGTATTATTCGC
TGGTTTCCATTGCAATCGTCTCATTGCTACTCTCTTACGTAGTTGGTACA
CTAGTTGACCGACAAGAAGAATCGCTGCTCCACGCACTTGGCGAGGATGA
ATCTGACAATTGGGTAGAGTCTCCAAGTCTGTTGGGGGCAATGGAGAAGG
ATGAGCTAATATTGTCGTTTGTATGGGTGTTAGTTATCATTGTTGTCGGT
GTTGCCGTTTTCATGCGACTTGAAGACTTAACTCTGTTGGACGCCGTCTA
TGTGACAATAATTTCAACTTCTACAGTTGGGTTTGGCGATTTCGAACCCA
GGCGAAAGGCAACAAAGCTGATCATGACGGTTTGGCTTTGCTTCTCGACC
GTTTGCATGGCCAAATTAGTCGGAGACATTGCGCACGCGTTTGCAAAGAT
GAAGCAAAGGGCCGCTACTCGAAGACTACTCGGGGCTACTCTTGATACTA
GAAGCCTTTTATACATAGATCGAGATCAGGATAGGCGCGTGAGCAAGGCA
GAGTTCCTTGTTGAGATGCTTACGCGAACTGGGAGGGTGGAAGACCAAGA
GATGAATAAGTTGCTTGCCATGTTTGACGAACTGGATGCAAACAAAGACG
GATATATTTCAGCTGAAGAGTGCCAACCGGACTTGTAA
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Coding sequence (CDS) from alignment at tig00000007_pilon:2181472..2182509-

>Gchil7602.t1 ID=Gchil7602.t1|Name=Gchil7602.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1038bp|location=Sequence derived from alignment at tig00000007_pilon:2181472..2182509- (Gracilaria chilensis NLEC103_M9 male)
ATGAACGCTTCAGAAAACACACCATTGTTGGCGCTATCCGTCGGGCAGTT
CTTGCAAAATGCTTCTCGTTCAGTATGGCTTTCGATAAAGTCTGAGTCAG
GAAGATATAGAGCACTTCTTCGTACTTGGCGGCGTCTAGAAGAAGGCGAG
CAGAAAGAGGATGTTGAGGATGTCTTACGAGACATTCAAAAGGACGAACA
TCTCAATGGGCAAATGCTGGTGTTTTCTATACTTGCGATACTGTTTCATC
TGACAAGTGGTATTTTCGTGTTACATTGGATTGAGGGGTGGACACTCTAC
GATTCAGCGTACTTTTGTGTAGTGACCACCACTACCGTCGGATATGGTGA
CATCACTCCGAAAAAGGGGGCGGCGAAGTTATTTGTCGTGTATTATTCGC
TGGTTTCCATTGCAATCGTCTCATTGCTACTCTCTTACGTAGTTGGTACA
CTAGTTGACCGACAAGAAGAATCGCTGCTCCACGCACTTGGCGAGGATGA
ATCTGACAATTGGGTAGAGTCTCCAAGTCTGTTGGGGGCAATGGAGAAGG
ATGAGCTAATATTGTCGTTTGTATGGGTGTTAGTTATCATTGTTGTCGGT
GTTGCCGTTTTCATGCGACTTGAAGACTTAACTCTGTTGGACGCCGTCTA
TGTGACAATAATTTCAACTTCTACAGTTGGGTTTGGCGATTTCGAACCCA
GGCGAAAGGCAACAAAGCTGATCATGACGGTTTGGCTTTGCTTCTCGACC
GTTTGCATGGCCAAATTAGTCGGAGACATTGCGCACGCGTTTGCAAAGAT
GAAGCAAAGGGCCGCTACTCGAAGACTACTCGGGGCTACTCTTGATACTA
GAAGCCTTTTATACATAGATCGAGATCAGGATAGGCGCGTGAGCAAGGCA
GAGTTCCTTGTTGAGATGCTTACGCGAACTGGGAGGGTGGAAGACCAAGA
GATGAATAAGTTGCTTGCCATGTTTGACGAACTGGATGCAAACAAAGACG
GATATATTTCAGCTGAAGAGTGCCAACCGGACTTGTAA
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