Gchil7599.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil7599.t1
Unique NameGchil7599.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length250
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000007_piloncontigtig00000007_pilon:2177195..2177944 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3827.XP_004495817.1
Preferred nameNFU4
PFAMsNfu_N,NifU
Max annot lvl35493|Streptophyta
KEGG koko:K22074
GOsGO:0000166,GO:0003674,GO:0005198,GO:0005488,GO:0005507,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0008144,GO:0017076,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0046872,GO:0046914,GO:0097159,GO:0097367,GO:1901265,GO:1901363
Evalue1.67e-74
EggNOG OGsCOG0694@1|root,KOG2358@2759|Eukaryota,37IUM@33090|Viridiplantae,3G9KI@35493|Streptophyta,4JHC5@91835|fabids
DescriptionnifU-like protein
COG categoryO
BRITEko00000,ko03029
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7599Gchil7599Gracilaria chilensis NLEC103_M9 malegenetig00000007_pilon 2177195..2177944 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7599.t1.start1Gchil7599.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000007_pilon 2177195..2177197 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7599.t1.CDS1Gchil7599.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000007_pilon 2177195..2177944 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7599.t1.exon1Gchil7599.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000007_pilon 2177195..2177944 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7599.t1.stop1Gchil7599.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000007_pilon 2177942..2177944 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7599.t1Gchil7599.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000007_pilon 2177195..2177944 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil7599.t1 ID=Gchil7599.t1|Name=Gchil7599.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=250bp
MMRNVSRALFRARRFAPQARAMFIQTQLTPNAHAVMFLPGRTVMPQGVGT
ADYPTLKSAANSPLARKLFAVSGVRSVFFGSDFVTVTKHDHLEWATLRPE
LFAVIMDFFTAADEHVIVPDAAATLHADTVITDQDSELVAMIKELLETRV
KPAVAQDGGSIVFRAFDETTGVVQLELQGACSTCSSSSITLKSGVENMLR
HYVPEVKSVHQVLAPHAHDLQKANMDALNNMQQKLSSSSPNSPTQRSEK*
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spliced messenger RNA

>Gchil7599.t1 ID=Gchil7599.t1|Name=Gchil7599.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=750bp|location=Sequence derived from alignment at tig00000007_pilon:2177195..2177944+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGCGAAACGTGAGCCGCGCGTTGTTTCGCGCGCGACGGTTTGCGCC
GCAAGCGCGCGCCATGTTCATTCAGACGCAGCTCACGCCCAACGCGCACG
CCGTCATGTTTCTGCCCGGTCGAACCGTCATGCCGCAAGGGGTGGGTACG
GCAGACTATCCCACGCTCAAGTCCGCTGCCAACAGTCCGTTGGCGAGAAA
ACTTTTCGCTGTGTCGGGTGTGCGTTCCGTCTTCTTCGGTTCGGACTTTG
TCACCGTTACCAAGCACGATCACCTGGAATGGGCCACGTTACGTCCGGAG
CTTTTCGCCGTTATCATGGACTTTTTCACTGCTGCTGACGAGCATGTCAT
TGTGCCCGACGCCGCTGCTACGCTGCATGCCGATACTGTTATTACTGACC
AAGATTCGGAGTTGGTGGCTATGATCAAGGAGTTGTTGGAGACGCGTGTC
AAGCCGGCTGTGGCGCAGGACGGTGGCAGTATTGTTTTTCGCGCTTTTGA
TGAAACCACCGGCGTTGTTCAACTCGAGCTACAGGGCGCCTGTTCAACTT
GCTCCAGCAGCAGTATCACCCTCAAGAGCGGTGTGGAAAACATGTTGCGA
CATTATGTGCCCGAGGTCAAGTCTGTGCACCAGGTGCTCGCCCCACACGC
GCACGATTTGCAAAAGGCAAACATGGATGCATTAAATAACATGCAACAAA
AGTTATCCTCTTCCTCCCCAAACTCGCCTACACAGCGCTCGGAGAAATAA
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protein sequence of Gchil7599.t1

>Gchil7599.t1 ID=Gchil7599.t1|Name=Gchil7599.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=250bp
MMRNVSRALFRARRFAPQARAMFIQTQLTPNAHAVMFLPGRTVMPQGVGT
ADYPTLKSAANSPLARKLFAVSGVRSVFFGSDFVTVTKHDHLEWATLRPE
LFAVIMDFFTAADEHVIVPDAAATLHADTVITDQDSELVAMIKELLETRV
KPAVAQDGGSIVFRAFDETTGVVQLELQGACSTCSSSSITLKSGVENMLR
HYVPEVKSVHQVLAPHAHDLQKANMDALNNMQQKLSSSSPNSPTQRSEK*
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mRNA from alignment at tig00000007_pilon:2177195..2177944+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil7599.t1 ID=Gchil7599.t1|Name=Gchil7599.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=750bp|location=Sequence derived from alignment at tig00000007_pilon:2177195..2177944+ (Gracilaria chilensis NLEC103_M9 male)
ATGATGCGAAACGTGAGCCGCGCGTTGTTTCGCGCGCGACGGTTTGCGCC
GCAAGCGCGCGCCATGTTCATTCAGACGCAGCTCACGCCCAACGCGCACG
CCGTCATGTTTCTGCCCGGTCGAACCGTCATGCCGCAAGGGGTGGGTACG
GCAGACTATCCCACGCTCAAGTCCGCTGCCAACAGTCCGTTGGCGAGAAA
ACTTTTCGCTGTGTCGGGTGTGCGTTCCGTCTTCTTCGGTTCGGACTTTG
TCACCGTTACCAAGCACGATCACCTGGAATGGGCCACGTTACGTCCGGAG
CTTTTCGCCGTTATCATGGACTTTTTCACTGCTGCTGACGAGCATGTCAT
TGTGCCCGACGCCGCTGCTACGCTGCATGCCGATACTGTTATTACTGACC
AAGATTCGGAGTTGGTGGCTATGATCAAGGAGTTGTTGGAGACGCGTGTC
AAGCCGGCTGTGGCGCAGGACGGTGGCAGTATTGTTTTTCGCGCTTTTGA
TGAAACCACCGGCGTTGTTCAACTCGAGCTACAGGGCGCCTGTTCAACTT
GCTCCAGCAGCAGTATCACCCTCAAGAGCGGTGTGGAAAACATGTTGCGA
CATTATGTGCCCGAGGTCAAGTCTGTGCACCAGGTGCTCGCCCCACACGC
GCACGATTTGCAAAAGGCAAACATGGATGCATTAAATAACATGCAACAAA
AGTTATCCTCTTCCTCCCCAAACTCGCCTACACAGCGCTCGGAGAAATAA
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Coding sequence (CDS) from alignment at tig00000007_pilon:2177195..2177944+

>Gchil7599.t1 ID=Gchil7599.t1|Name=Gchil7599.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=750bp|location=Sequence derived from alignment at tig00000007_pilon:2177195..2177944+ (Gracilaria chilensis NLEC103_M9 male)
ATGATGCGAAACGTGAGCCGCGCGTTGTTTCGCGCGCGACGGTTTGCGCC
GCAAGCGCGCGCCATGTTCATTCAGACGCAGCTCACGCCCAACGCGCACG
CCGTCATGTTTCTGCCCGGTCGAACCGTCATGCCGCAAGGGGTGGGTACG
GCAGACTATCCCACGCTCAAGTCCGCTGCCAACAGTCCGTTGGCGAGAAA
ACTTTTCGCTGTGTCGGGTGTGCGTTCCGTCTTCTTCGGTTCGGACTTTG
TCACCGTTACCAAGCACGATCACCTGGAATGGGCCACGTTACGTCCGGAG
CTTTTCGCCGTTATCATGGACTTTTTCACTGCTGCTGACGAGCATGTCAT
TGTGCCCGACGCCGCTGCTACGCTGCATGCCGATACTGTTATTACTGACC
AAGATTCGGAGTTGGTGGCTATGATCAAGGAGTTGTTGGAGACGCGTGTC
AAGCCGGCTGTGGCGCAGGACGGTGGCAGTATTGTTTTTCGCGCTTTTGA
TGAAACCACCGGCGTTGTTCAACTCGAGCTACAGGGCGCCTGTTCAACTT
GCTCCAGCAGCAGTATCACCCTCAAGAGCGGTGTGGAAAACATGTTGCGA
CATTATGTGCCCGAGGTCAAGTCTGTGCACCAGGTGCTCGCCCCACACGC
GCACGATTTGCAAAAGGCAAACATGGATGCATTAAATAACATGCAACAAA
AGTTATCCTCTTCCTCCCCAAACTCGCCTACACAGCGCTCGGAGAAATAA
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