Gchil7598.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil7598.t1
Unique NameGchil7598.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length376
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000007_piloncontigtig00000007_pilon:2175502..2176629 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog6500.XP_005098687.1
Preferred nameRNF38
PFAMszf-RING_2
Max annot lvl33208|Metazoa
KEGG koko:K19041
GOsGO:0003008,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005929,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0007610,GO:0007611,GO:0007613,GO:0007616,GO:0008150,GO:0008152,GO:0008270,GO:0009056,GO:0009057,GO:0009636,GO:0009987,GO:0010033,GO:0010498,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0019941,GO:0030163,GO:0030534,GO:0031514,GO:0031974,GO:0031981,GO:0032446,GO:0032501,GO:0036126,GO:0036211,GO:0042221,GO:0042493,GO:0042995,GO:0043161,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045471,GO:0046677,GO:0046872,GO:0046914,GO:0048149,GO:0050877,GO:0050890,GO:0050896,GO:0051603,GO:0061630,GO:0061659,GO:0070013,GO:0070647,GO:0071704,GO:0097223,GO:0097305,GO:0097729,GO:0120025,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1901700
Evalue2.56e-18
EggNOG OGsKOG0800@1|root,KOG0800@2759|Eukaryota,38CVJ@33154|Opisthokonta,3BGBB@33208|Metazoa,3CYFH@33213|Bilateria
EC2.3.2.27
DescriptionRing finger protein
COG categoryO
BRITEko00000,ko01000,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7598Gchil7598Gracilaria chilensis NLEC103_M9 malegenetig00000007_pilon 2175502..2176629 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7598.t1.stop1Gchil7598.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000007_pilon 2175502..2175504 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7598.t1.CDS1Gchil7598.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000007_pilon 2175502..2176629 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7598.t1.exon1Gchil7598.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000007_pilon 2175502..2176629 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7598.t1.start1Gchil7598.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000007_pilon 2176627..2176629 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7598.t1Gchil7598.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000007_pilon 2175502..2176629 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil7598.t1 ID=Gchil7598.t1|Name=Gchil7598.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=376bp
MPHRPAPPQGRPDRRVPSYPQPTREWPQPSTAPPPSEARFPFVQGTPSFG
AADMLNDLFRHIAQSQRPSGNSSGGGGGGGGAAAAAAATTAAATAGLAAL
AHFNGREYVPVAQPAAPPRATAASADGVLSSVLQETFGRMDDRMFGAGSF
SVTPDGVHFEHMRTPPGARVSLTRATPPTGASATAGSGGAPQPPHGGRVQ
FGDAGDMMNIMFSGMFGPFAAMGGGGGGGGGGGATGGGATGGGLAGAGGA
AFGEFLRAMVPGGMEGGETYEDWLNVIERMGGNVNRGGSEAEIERLPTHS
FEQDSSAETGDGEQQEKCAICLGEYERGDHVKVLPCAHRFHAECVDQWLR
VNRICPFCKQSIRAADAPASTSRRS*
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spliced messenger RNA

>Gchil7598.t1 ID=Gchil7598.t1|Name=Gchil7598.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1128bp|location=Sequence derived from alignment at tig00000007_pilon:2175502..2176629- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGCACCGCCCAGCACCGCCGCAAGGCCGCCCCGACCGCCGCGTGCC
GTCGTACCCGCAGCCCACGCGCGAGTGGCCGCAACCGTCCACGGCGCCGC
CGCCGTCCGAAGCACGCTTCCCGTTCGTACAGGGAACTCCGTCCTTCGGC
GCCGCCGACATGCTCAACGACCTGTTTCGACACATTGCACAGTCGCAACG
CCCCTCTGGTAACTCCTCTGGTGGTGGTGGTGGTGGTGGTGGCGCCGCCG
CCGCCGCCGCCGCCACCACCGCTGCCGCTACCGCGGGCCTCGCTGCCCTG
GCCCACTTTAACGGCCGTGAGTACGTGCCCGTGGCGCAGCCCGCCGCGCC
GCCGCGCGCCACCGCTGCCTCGGCAGATGGCGTGCTCAGCTCGGTTTTGC
AGGAAACGTTTGGACGCATGGATGACCGCATGTTTGGCGCCGGTTCCTTC
TCAGTCACCCCGGACGGCGTGCACTTTGAGCACATGCGCACCCCACCCGG
GGCGCGTGTGTCCTTGACGCGCGCCACACCCCCCACCGGCGCGTCCGCTA
CCGCTGGTAGTGGCGGCGCGCCGCAGCCGCCGCACGGTGGCAGGGTTCAG
TTTGGCGACGCCGGCGACATGATGAACATCATGTTCTCAGGCATGTTTGG
GCCGTTTGCTGCCATGGGCGGCGGTGGTGGTGGCGGCGGCGGCGGTGGCG
CAACAGGCGGTGGCGCAACAGGCGGCGGCCTCGCAGGCGCAGGCGGCGCG
GCATTCGGAGAGTTTCTTCGCGCAATGGTGCCGGGCGGCATGGAAGGCGG
CGAGACGTACGAGGACTGGCTCAACGTGATCGAGCGCATGGGCGGAAACG
TGAATCGCGGCGGAAGCGAGGCCGAAATTGAACGACTTCCCACGCATAGC
TTCGAACAAGACAGCAGCGCTGAGACGGGCGACGGCGAGCAGCAGGAGAA
ATGCGCCATCTGTCTGGGCGAGTACGAGCGCGGCGACCACGTCAAGGTGT
TACCGTGCGCACATCGCTTCCACGCCGAATGCGTTGACCAGTGGCTGCGA
GTGAATCGCATCTGTCCGTTCTGCAAACAAAGCATTCGTGCGGCGGACGC
GCCTGCGTCTACGTCACGACGCTCGTAG
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protein sequence of Gchil7598.t1

>Gchil7598.t1 ID=Gchil7598.t1|Name=Gchil7598.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=376bp
MPHRPAPPQGRPDRRVPSYPQPTREWPQPSTAPPPSEARFPFVQGTPSFG
AADMLNDLFRHIAQSQRPSGNSSGGGGGGGGAAAAAAATTAAATAGLAAL
AHFNGREYVPVAQPAAPPRATAASADGVLSSVLQETFGRMDDRMFGAGSF
SVTPDGVHFEHMRTPPGARVSLTRATPPTGASATAGSGGAPQPPHGGRVQ
FGDAGDMMNIMFSGMFGPFAAMGGGGGGGGGGGATGGGATGGGLAGAGGA
AFGEFLRAMVPGGMEGGETYEDWLNVIERMGGNVNRGGSEAEIERLPTHS
FEQDSSAETGDGEQQEKCAICLGEYERGDHVKVLPCAHRFHAECVDQWLR
VNRICPFCKQSIRAADAPASTSRRS*
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mRNA from alignment at tig00000007_pilon:2175502..2176629-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil7598.t1 ID=Gchil7598.t1|Name=Gchil7598.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1128bp|location=Sequence derived from alignment at tig00000007_pilon:2175502..2176629- (Gracilaria chilensis NLEC103_M9 male)
ATGCCGCACCGCCCAGCACCGCCGCAAGGCCGCCCCGACCGCCGCGTGCC
GTCGTACCCGCAGCCCACGCGCGAGTGGCCGCAACCGTCCACGGCGCCGC
CGCCGTCCGAAGCACGCTTCCCGTTCGTACAGGGAACTCCGTCCTTCGGC
GCCGCCGACATGCTCAACGACCTGTTTCGACACATTGCACAGTCGCAACG
CCCCTCTGGTAACTCCTCTGGTGGTGGTGGTGGTGGTGGTGGCGCCGCCG
CCGCCGCCGCCGCCACCACCGCTGCCGCTACCGCGGGCCTCGCTGCCCTG
GCCCACTTTAACGGCCGTGAGTACGTGCCCGTGGCGCAGCCCGCCGCGCC
GCCGCGCGCCACCGCTGCCTCGGCAGATGGCGTGCTCAGCTCGGTTTTGC
AGGAAACGTTTGGACGCATGGATGACCGCATGTTTGGCGCCGGTTCCTTC
TCAGTCACCCCGGACGGCGTGCACTTTGAGCACATGCGCACCCCACCCGG
GGCGCGTGTGTCCTTGACGCGCGCCACACCCCCCACCGGCGCGTCCGCTA
CCGCTGGTAGTGGCGGCGCGCCGCAGCCGCCGCACGGTGGCAGGGTTCAG
TTTGGCGACGCCGGCGACATGATGAACATCATGTTCTCAGGCATGTTTGG
GCCGTTTGCTGCCATGGGCGGCGGTGGTGGTGGCGGCGGCGGCGGTGGCG
CAACAGGCGGTGGCGCAACAGGCGGCGGCCTCGCAGGCGCAGGCGGCGCG
GCATTCGGAGAGTTTCTTCGCGCAATGGTGCCGGGCGGCATGGAAGGCGG
CGAGACGTACGAGGACTGGCTCAACGTGATCGAGCGCATGGGCGGAAACG
TGAATCGCGGCGGAAGCGAGGCCGAAATTGAACGACTTCCCACGCATAGC
TTCGAACAAGACAGCAGCGCTGAGACGGGCGACGGCGAGCAGCAGGAGAA
ATGCGCCATCTGTCTGGGCGAGTACGAGCGCGGCGACCACGTCAAGGTGT
TACCGTGCGCACATCGCTTCCACGCCGAATGCGTTGACCAGTGGCTGCGA
GTGAATCGCATCTGTCCGTTCTGCAAACAAAGCATTCGTGCGGCGGACGC
GCCTGCGTCTACGTCACGACGCTCGTAG
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Coding sequence (CDS) from alignment at tig00000007_pilon:2175502..2176629-

>Gchil7598.t1 ID=Gchil7598.t1|Name=Gchil7598.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1128bp|location=Sequence derived from alignment at tig00000007_pilon:2175502..2176629- (Gracilaria chilensis NLEC103_M9 male)
ATGCCGCACCGCCCAGCACCGCCGCAAGGCCGCCCCGACCGCCGCGTGCC
GTCGTACCCGCAGCCCACGCGCGAGTGGCCGCAACCGTCCACGGCGCCGC
CGCCGTCCGAAGCACGCTTCCCGTTCGTACAGGGAACTCCGTCCTTCGGC
GCCGCCGACATGCTCAACGACCTGTTTCGACACATTGCACAGTCGCAACG
CCCCTCTGGTAACTCCTCTGGTGGTGGTGGTGGTGGTGGTGGCGCCGCCG
CCGCCGCCGCCGCCACCACCGCTGCCGCTACCGCGGGCCTCGCTGCCCTG
GCCCACTTTAACGGCCGTGAGTACGTGCCCGTGGCGCAGCCCGCCGCGCC
GCCGCGCGCCACCGCTGCCTCGGCAGATGGCGTGCTCAGCTCGGTTTTGC
AGGAAACGTTTGGACGCATGGATGACCGCATGTTTGGCGCCGGTTCCTTC
TCAGTCACCCCGGACGGCGTGCACTTTGAGCACATGCGCACCCCACCCGG
GGCGCGTGTGTCCTTGACGCGCGCCACACCCCCCACCGGCGCGTCCGCTA
CCGCTGGTAGTGGCGGCGCGCCGCAGCCGCCGCACGGTGGCAGGGTTCAG
TTTGGCGACGCCGGCGACATGATGAACATCATGTTCTCAGGCATGTTTGG
GCCGTTTGCTGCCATGGGCGGCGGTGGTGGTGGCGGCGGCGGCGGTGGCG
CAACAGGCGGTGGCGCAACAGGCGGCGGCCTCGCAGGCGCAGGCGGCGCG
GCATTCGGAGAGTTTCTTCGCGCAATGGTGCCGGGCGGCATGGAAGGCGG
CGAGACGTACGAGGACTGGCTCAACGTGATCGAGCGCATGGGCGGAAACG
TGAATCGCGGCGGAAGCGAGGCCGAAATTGAACGACTTCCCACGCATAGC
TTCGAACAAGACAGCAGCGCTGAGACGGGCGACGGCGAGCAGCAGGAGAA
ATGCGCCATCTGTCTGGGCGAGTACGAGCGCGGCGACCACGTCAAGGTGT
TACCGTGCGCACATCGCTTCCACGCCGAATGCGTTGACCAGTGGCTGCGA
GTGAATCGCATCTGTCCGTTCTGCAAACAAAGCATTCGTGCGGCGGACGC
GCCTGCGTCTACGTCACGACGCTCGTAG
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