Gchil7594.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil7594.t1
Unique NameGchil7594.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length168
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000007_piloncontigtig00000007_pilon:2122345..2122848 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog55529.EKX47592
PFAMsDUF393
Max annot lvl2759|Eukaryota
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0010287,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464
Evalue5.78e-40
EggNOG OGsCOG3011@1|root,2S8IF@2759|Eukaryota
DescriptionProtein of unknown function, DUF393
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7594Gchil7594Gracilaria chilensis NLEC103_M9 malegenetig00000007_pilon 2122345..2122848 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7594.t1.stop1Gchil7594.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000007_pilon 2122345..2122347 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7594.t1.CDS1Gchil7594.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000007_pilon 2122345..2122848 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7594.t1.exon1Gchil7594.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000007_pilon 2122345..2122848 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7594.t1.start1Gchil7594.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000007_pilon 2122846..2122848 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7594.t1Gchil7594.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000007_pilon 2122345..2122848 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil7594.t1 ID=Gchil7594.t1|Name=Gchil7594.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=168bp
MALQRSRMRFLCCVSPTQGKESRDELLRRKGYRPGDNVIMFDGVCAMCNA
GVDFVRRYDTRNQFKFAALQSQTGQALTEKFGCPSDLSTMVYIEGNEAYL
RSDAALKIGRRLGWYFSLPAQIGLLALPKPFRDFLYTDVIAKNRYSVFGK
RDECRFVEPGEEHRFLD*
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spliced messenger RNA

>Gchil7594.t1 ID=Gchil7594.t1|Name=Gchil7594.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=504bp|location=Sequence derived from alignment at tig00000007_pilon:2122345..2122848- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCACTACAGCGAAGTCGAATGAGGTTTTTGTGTTGCGTGAGTCCCAC
TCAGGGTAAGGAATCACGGGATGAACTGTTGCGACGCAAAGGATATCGTC
CAGGAGATAATGTGATTATGTTTGACGGCGTCTGTGCAATGTGCAATGCC
GGGGTTGACTTTGTAAGGAGATACGATACAAGAAACCAGTTCAAATTCGC
CGCTCTTCAGAGTCAAACGGGACAAGCGCTCACTGAGAAGTTTGGATGCC
CTTCAGATCTCTCTACAATGGTTTACATCGAAGGTAATGAAGCATATTTG
CGGTCAGATGCAGCTCTGAAGATTGGACGTCGACTTGGGTGGTACTTTTC
TCTTCCAGCGCAAATAGGTTTGTTGGCATTGCCCAAGCCTTTCAGAGATT
TCCTATATACTGACGTAATAGCAAAGAATAGGTATTCCGTGTTTGGAAAG
AGAGACGAATGTCGATTTGTTGAGCCTGGGGAGGAACATCGTTTTCTAGA
TTGA
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protein sequence of Gchil7594.t1

>Gchil7594.t1 ID=Gchil7594.t1|Name=Gchil7594.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=168bp
MALQRSRMRFLCCVSPTQGKESRDELLRRKGYRPGDNVIMFDGVCAMCNA
GVDFVRRYDTRNQFKFAALQSQTGQALTEKFGCPSDLSTMVYIEGNEAYL
RSDAALKIGRRLGWYFSLPAQIGLLALPKPFRDFLYTDVIAKNRYSVFGK
RDECRFVEPGEEHRFLD*
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mRNA from alignment at tig00000007_pilon:2122345..2122848-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil7594.t1 ID=Gchil7594.t1|Name=Gchil7594.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=504bp|location=Sequence derived from alignment at tig00000007_pilon:2122345..2122848- (Gracilaria chilensis NLEC103_M9 male)
ATGGCACTACAGCGAAGTCGAATGAGGTTTTTGTGTTGCGTGAGTCCCAC
TCAGGGTAAGGAATCACGGGATGAACTGTTGCGACGCAAAGGATATCGTC
CAGGAGATAATGTGATTATGTTTGACGGCGTCTGTGCAATGTGCAATGCC
GGGGTTGACTTTGTAAGGAGATACGATACAAGAAACCAGTTCAAATTCGC
CGCTCTTCAGAGTCAAACGGGACAAGCGCTCACTGAGAAGTTTGGATGCC
CTTCAGATCTCTCTACAATGGTTTACATCGAAGGTAATGAAGCATATTTG
CGGTCAGATGCAGCTCTGAAGATTGGACGTCGACTTGGGTGGTACTTTTC
TCTTCCAGCGCAAATAGGTTTGTTGGCATTGCCCAAGCCTTTCAGAGATT
TCCTATATACTGACGTAATAGCAAAGAATAGGTATTCCGTGTTTGGAAAG
AGAGACGAATGTCGATTTGTTGAGCCTGGGGAGGAACATCGTTTTCTAGA
TTGA
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Coding sequence (CDS) from alignment at tig00000007_pilon:2122345..2122848-

>Gchil7594.t1 ID=Gchil7594.t1|Name=Gchil7594.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=504bp|location=Sequence derived from alignment at tig00000007_pilon:2122345..2122848- (Gracilaria chilensis NLEC103_M9 male)
ATGGCACTACAGCGAAGTCGAATGAGGTTTTTGTGTTGCGTGAGTCCCAC
TCAGGGTAAGGAATCACGGGATGAACTGTTGCGACGCAAAGGATATCGTC
CAGGAGATAATGTGATTATGTTTGACGGCGTCTGTGCAATGTGCAATGCC
GGGGTTGACTTTGTAAGGAGATACGATACAAGAAACCAGTTCAAATTCGC
CGCTCTTCAGAGTCAAACGGGACAAGCGCTCACTGAGAAGTTTGGATGCC
CTTCAGATCTCTCTACAATGGTTTACATCGAAGGTAATGAAGCATATTTG
CGGTCAGATGCAGCTCTGAAGATTGGACGTCGACTTGGGTGGTACTTTTC
TCTTCCAGCGCAAATAGGTTTGTTGGCATTGCCCAAGCCTTTCAGAGATT
TCCTATATACTGACGTAATAGCAAAGAATAGGTATTCCGTGTTTGGAAAG
AGAGACGAATGTCGATTTGTTGAGCCTGGGGAGGAACATCGTTTTCTAGA
TTGA
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