Gchil7586.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil7586.t1
Unique Name	Gchil7586.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	440

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000007_pilon	contig	tig00000007_pilon:2099409..2100728 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CMK303CT
PFAMs	ArfGap
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K12492
KEGG Pathway	ko04144,map04144
Evalue	6.46e-37
EggNOG OGs	COG5347@1\|root,KOG0704@2759\|Eukaryota
Description	GTPase activator activity
COG category	U
BRITE	ko00000,ko00001,ko04131

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil7586	Gchil7586	Gracilaria chilensis NLEC103_M9 male	gene	tig00000007_pilon 2099409..2100728 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7586.t1.start1	Gchil7586.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000007_pilon 2099409..2099411 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7586.t1.CDS1	Gchil7586.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000007_pilon 2099409..2100728 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7586.t1.exon1	Gchil7586.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000007_pilon 2099409..2100728 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7586.t1.stop1	Gchil7586.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000007_pilon 2100726..2100728 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7586.t1	Gchil7586.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000007_pilon 2099409..2100728 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000007_pilon:2099409..2100728+
coding sequence from alignment at tig00000007_pilon:2099409..2100728+

mRNA sequence

>Gchil7586.t1 ID=Gchil7586.t1|Name=Gchil7586.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=440bp
MDPTKKILRELQMRPENKLCADCGTKNPQWATVSFGTFICLDCSGQHRGL
GVHISFVRSVGMDKWKEWEVKRMQCGGNAKFVKYCKENGMHGAEISSKYQ
SEAAAIYAAKLKSEATGQPYEAPPPANRPKPKMAAPGSLGSTGMGGVTTH
GSSGARRSSGLGMGSVGGNRVVNGMGTGTGTGMGSMSSGSMSSSMGNGTG
GGYGSSTQPLGGISSDMWHQNNGNPATMPSTSSTSYGRSTGTSGFSGFGG
IGSLGSNAPATLNNVGQNLTRNLSNIASTVQKSDVMGHASKAAAQAGGML
SSWFTNVSTQANKLMNENDGRQDLRAGLRRNLAQAPGATNAGFKGFSSDD
FAKSSYGTNNNTTTNNNTNETLPTNRTNGVSYTQMGSSRQVSQPGTSQSN
PQSAAVAAGGNTAGENVWGGFDDVPSTPKETSDPWGAWN*

spliced messenger RNA

>Gchil7586.t1 ID=Gchil7586.t1|Name=Gchil7586.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1320bp|location=Sequence derived from alignment at tig00000007_pilon:2099409..2100728+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACCCGACGAAGAAAATATTGCGGGAGCTCCAGATGCGTCCTGAGAA
CAAGCTGTGTGCGGATTGTGGTACCAAGAACCCTCAATGGGCGACAGTTT
CGTTCGGTACTTTCATCTGCCTAGACTGCTCTGGTCAGCATCGTGGACTT
GGCGTTCATATATCCTTCGTGCGCTCGGTCGGAATGGATAAGTGGAAGGA
GTGGGAGGTAAAGCGCATGCAGTGTGGTGGAAATGCAAAGTTCGTTAAAT
ACTGCAAAGAGAATGGTATGCATGGTGCGGAGATAAGTAGCAAGTACCAG
TCTGAGGCTGCGGCGATATATGCGGCAAAGTTGAAGAGTGAGGCCACCGG
CCAACCATATGAAGCTCCACCGCCTGCAAATCGCCCGAAACCGAAGATGG
CCGCCCCTGGGTCATTGGGCTCCACCGGTATGGGTGGAGTAACCACCCAC
GGCTCATCCGGTGCGCGAAGGTCGAGCGGCTTGGGGATGGGCTCAGTGGG
TGGCAACAGAGTCGTGAACGGTATGGGGACCGGCACGGGGACTGGCATGG
GTAGTATGAGCAGCGGCAGCATGAGCAGTAGTATGGGTAATGGTACGGGA
GGTGGCTACGGATCCAGTACGCAACCACTAGGAGGAATATCCTCTGATAT
GTGGCATCAGAATAACGGAAACCCGGCCACAATGCCGAGCACATCTTCGA
CGAGCTATGGCAGAAGTACTGGGACCTCTGGATTTAGTGGATTTGGTGGG
ATTGGTTCACTGGGATCCAACGCCCCTGCAACTTTGAACAATGTTGGGCA
GAACCTCACTCGAAATCTGTCTAATATCGCCTCAACTGTTCAGAAATCTG
ATGTGATGGGTCATGCAAGTAAGGCAGCAGCTCAGGCAGGGGGTATGTTA
TCATCTTGGTTCACAAATGTATCTACCCAGGCAAATAAGTTAATGAATGA
GAACGACGGACGTCAAGACCTACGAGCAGGTCTACGCAGAAATCTGGCGC
AAGCTCCAGGGGCAACTAATGCAGGATTTAAAGGCTTTTCTTCCGACGAT
TTTGCAAAAAGTTCATACGGaactaacaacaacaccaccaccaacaacaa
cactaacgaaacaTTACCGACGAATCGTACAAATGGTGTGTCGTACACGC
AAATGGGCTCATCCCGCCAAGTGAGCCAACCTGGTACGTCCCAATCTAAT
CCCCAAAGCGCTGCAGTGGCGGCAGGAGGTAATACAGCAGGCGAAAATGT
GTGGGGTGGATTCGATGATGTGCCATCAACACCAAAAGAAACTAGCGATC
CATGGGGCGCCTGGAATTGA

protein sequence of Gchil7586.t1

>Gchil7586.t1 ID=Gchil7586.t1|Name=Gchil7586.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=440bp
MDPTKKILRELQMRPENKLCADCGTKNPQWATVSFGTFICLDCSGQHRGL
GVHISFVRSVGMDKWKEWEVKRMQCGGNAKFVKYCKENGMHGAEISSKYQ
SEAAAIYAAKLKSEATGQPYEAPPPANRPKPKMAAPGSLGSTGMGGVTTH
GSSGARRSSGLGMGSVGGNRVVNGMGTGTGTGMGSMSSGSMSSSMGNGTG
GGYGSSTQPLGGISSDMWHQNNGNPATMPSTSSTSYGRSTGTSGFSGFGG
IGSLGSNAPATLNNVGQNLTRNLSNIASTVQKSDVMGHASKAAAQAGGML
SSWFTNVSTQANKLMNENDGRQDLRAGLRRNLAQAPGATNAGFKGFSSDD
FAKSSYGTNNNTTTNNNTNETLPTNRTNGVSYTQMGSSRQVSQPGTSQSN
PQSAAVAAGGNTAGENVWGGFDDVPSTPKETSDPWGAWN*

mRNA from alignment at tig00000007_pilon:2099409..2100728+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil7586.t1 ID=Gchil7586.t1|Name=Gchil7586.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1320bp|location=Sequence derived from alignment at tig00000007_pilon:2099409..2100728+ (Gracilaria chilensis NLEC103_M9 male)
ATGGACCCGACGAAGAAAATATTGCGGGAGCTCCAGATGCGTCCTGAGAA
CAAGCTGTGTGCGGATTGTGGTACCAAGAACCCTCAATGGGCGACAGTTT
CGTTCGGTACTTTCATCTGCCTAGACTGCTCTGGTCAGCATCGTGGACTT
GGCGTTCATATATCCTTCGTGCGCTCGGTCGGAATGGATAAGTGGAAGGA
GTGGGAGGTAAAGCGCATGCAGTGTGGTGGAAATGCAAAGTTCGTTAAAT
ACTGCAAAGAGAATGGTATGCATGGTGCGGAGATAAGTAGCAAGTACCAG
TCTGAGGCTGCGGCGATATATGCGGCAAAGTTGAAGAGTGAGGCCACCGG
CCAACCATATGAAGCTCCACCGCCTGCAAATCGCCCGAAACCGAAGATGG
CCGCCCCTGGGTCATTGGGCTCCACCGGTATGGGTGGAGTAACCACCCAC
GGCTCATCCGGTGCGCGAAGGTCGAGCGGCTTGGGGATGGGCTCAGTGGG
TGGCAACAGAGTCGTGAACGGTATGGGGACCGGCACGGGGACTGGCATGG
GTAGTATGAGCAGCGGCAGCATGAGCAGTAGTATGGGTAATGGTACGGGA
GGTGGCTACGGATCCAGTACGCAACCACTAGGAGGAATATCCTCTGATAT
GTGGCATCAGAATAACGGAAACCCGGCCACAATGCCGAGCACATCTTCGA
CGAGCTATGGCAGAAGTACTGGGACCTCTGGATTTAGTGGATTTGGTGGG
ATTGGTTCACTGGGATCCAACGCCCCTGCAACTTTGAACAATGTTGGGCA
GAACCTCACTCGAAATCTGTCTAATATCGCCTCAACTGTTCAGAAATCTG
ATGTGATGGGTCATGCAAGTAAGGCAGCAGCTCAGGCAGGGGGTATGTTA
TCATCTTGGTTCACAAATGTATCTACCCAGGCAAATAAGTTAATGAATGA
GAACGACGGACGTCAAGACCTACGAGCAGGTCTACGCAGAAATCTGGCGC
AAGCTCCAGGGGCAACTAATGCAGGATTTAAAGGCTTTTCTTCCGACGAT
TTTGCAAAAAGTTCATACGGaactaacaacaacaccaccaccaacaacaa
cactaacgaaacaTTACCGACGAATCGTACAAATGGTGTGTCGTACACGC
AAATGGGCTCATCCCGCCAAGTGAGCCAACCTGGTACGTCCCAATCTAAT
CCCCAAAGCGCTGCAGTGGCGGCAGGAGGTAATACAGCAGGCGAAAATGT
GTGGGGTGGATTCGATGATGTGCCATCAACACCAAAAGAAACTAGCGATC
CATGGGGCGCCTGGAATTGA

Coding sequence (CDS) from alignment at tig00000007_pilon:2099409..2100728+

>Gchil7586.t1 ID=Gchil7586.t1|Name=Gchil7586.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1320bp|location=Sequence derived from alignment at tig00000007_pilon:2099409..2100728+ (Gracilaria chilensis NLEC103_M9 male)
ATGGACCCGACGAAGAAAATATTGCGGGAGCTCCAGATGCGTCCTGAGAA
CAAGCTGTGTGCGGATTGTGGTACCAAGAACCCTCAATGGGCGACAGTTT
CGTTCGGTACTTTCATCTGCCTAGACTGCTCTGGTCAGCATCGTGGACTT
GGCGTTCATATATCCTTCGTGCGCTCGGTCGGAATGGATAAGTGGAAGGA
GTGGGAGGTAAAGCGCATGCAGTGTGGTGGAAATGCAAAGTTCGTTAAAT
ACTGCAAAGAGAATGGTATGCATGGTGCGGAGATAAGTAGCAAGTACCAG
TCTGAGGCTGCGGCGATATATGCGGCAAAGTTGAAGAGTGAGGCCACCGG
CCAACCATATGAAGCTCCACCGCCTGCAAATCGCCCGAAACCGAAGATGG
CCGCCCCTGGGTCATTGGGCTCCACCGGTATGGGTGGAGTAACCACCCAC
GGCTCATCCGGTGCGCGAAGGTCGAGCGGCTTGGGGATGGGCTCAGTGGG
TGGCAACAGAGTCGTGAACGGTATGGGGACCGGCACGGGGACTGGCATGG
GTAGTATGAGCAGCGGCAGCATGAGCAGTAGTATGGGTAATGGTACGGGA
GGTGGCTACGGATCCAGTACGCAACCACTAGGAGGAATATCCTCTGATAT
GTGGCATCAGAATAACGGAAACCCGGCCACAATGCCGAGCACATCTTCGA
CGAGCTATGGCAGAAGTACTGGGACCTCTGGATTTAGTGGATTTGGTGGG
ATTGGTTCACTGGGATCCAACGCCCCTGCAACTTTGAACAATGTTGGGCA
GAACCTCACTCGAAATCTGTCTAATATCGCCTCAACTGTTCAGAAATCTG
ATGTGATGGGTCATGCAAGTAAGGCAGCAGCTCAGGCAGGGGGTATGTTA
TCATCTTGGTTCACAAATGTATCTACCCAGGCAAATAAGTTAATGAATGA
GAACGACGGACGTCAAGACCTACGAGCAGGTCTACGCAGAAATCTGGCGC
AAGCTCCAGGGGCAACTAATGCAGGATTTAAAGGCTTTTCTTCCGACGAT
TTTGCAAAAAGTTCATACGGaactaacaacaacaccaccaccaacaacaa
cactaacgaaacaTTACCGACGAATCGTACAAATGGTGTGTCGTACACGC
AAATGGGCTCATCCCGCCAAGTGAGCCAACCTGGTACGTCCCAATCTAAT
CCCCAAAGCGCTGCAGTGGCGGCAGGAGGTAATACAGCAGGCGAAAATGT
GTGGGGTGGATTCGATGATGTGCCATCAACACCAAAAGAAACTAGCGATC
CATGGGGCGCCTGGAATTGA