Gchil7585.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil7585.t1
Unique Name	Gchil7585.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	260

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000007_pilon	contig	tig00000007_pilon:2098134..2098913 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	144197.XP_008304498.1
Preferred name	ALKBH4
PFAMs	2OG-FeII_Oxy
Max annot lvl	33208\|Metazoa
KEGG ko	ko:K10766
GOs	GO:0000910,GO:0002164,GO:0002376,GO:0002520,GO:0003674,GO:0003779,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006139,GO:0006259,GO:0006304,GO:0006464,GO:0006482,GO:0006725,GO:0006807,GO:0006996,GO:0007010,GO:0007049,GO:0007275,GO:0008092,GO:0008150,GO:0008152,GO:0008214,GO:0009791,GO:0009987,GO:0010324,GO:0016043,GO:0016491,GO:0016705,GO:0016706,GO:0019538,GO:0022402,GO:0030029,GO:0030036,GO:0030097,GO:0030496,GO:0031032,GO:0032451,GO:0032501,GO:0032502,GO:0032506,GO:0034641,GO:0035166,GO:0035167,GO:0035510,GO:0035511,GO:0035514,GO:0035516,GO:0036090,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0044728,GO:0046483,GO:0048513,GO:0048534,GO:0048542,GO:0048569,GO:0048731,GO:0048732,GO:0048856,GO:0051213,GO:0051301,GO:0055114,GO:0061024,GO:0061640,GO:0070938,GO:0070988,GO:0070989,GO:0071704,GO:0071840,GO:0080111,GO:0090304,GO:0099024,GO:0140097,GO:1901360,GO:1901564
Evalue	1.46e-10
EggNOG OGs	KOG3959@1\|root,KOG3959@2759\|Eukaryota,38EWY@33154\|Opisthokonta,3BJ3S@33208\|Metazoa,3D1CQ@33213\|Bilateria,480J9@7711\|Chordata,48ZZE@7742\|Vertebrata,4A2Q7@7898\|Actinopterygii
Description	alkB, alkylation repair homolog 4 (E. coli)
COG category	S
BRITE	ko00000,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil7585	Gchil7585	Gracilaria chilensis NLEC103_M9 male	gene	tig00000007_pilon 2098134..2098913 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7585.t1.start1	Gchil7585.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000007_pilon 2098134..2098136 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7585.t1.CDS1	Gchil7585.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000007_pilon 2098134..2098913 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7585.t1.exon1	Gchil7585.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000007_pilon 2098134..2098913 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7585.t1.stop1	Gchil7585.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000007_pilon 2098911..2098913 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7585.t1	Gchil7585.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000007_pilon 2098134..2098913 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000007_pilon:2098134..2098913+
coding sequence from alignment at tig00000007_pilon:2098134..2098913+

mRNA sequence

>Gchil7585.t1 ID=Gchil7585.t1|Name=Gchil7585.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=260bp
MTSDRFCLPSFFSPHKSRPSSVPGFILREDAFTVEEEAALIHAVDTSSAQ
WIRRRTRITKNYGPYYFYQERNTAEGRFRYTDGNIVHTPLPDFLETIVMP
ILIREVPELSNFTPNQLHVALYKKQEESKIHMHNDNKMGELGPYIVGMCL
LSDCYMTFVRPKDGKKRVLHLPRRCVYVMTGESHHEWRHGILKGQTSSDR
VSFTLREVRKLALEDGARVTKSNHMPSAQSIRDQAAKDEKAHRGEIERLN
INLADSLGT*

spliced messenger RNA

>Gchil7585.t1 ID=Gchil7585.t1|Name=Gchil7585.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=780bp|location=Sequence derived from alignment at tig00000007_pilon:2098134..2098913+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCTCCGATCGGTTCTGTCTACCATCCTTCTTTTCACCACATAAGTC
ACGTCCAAGCTCAGTACCAGGATTCATTCTCCGAGAGGATGCCTTTACTG
TAGAGGAAGAAGCAGCTCTGATTCACGCAGTGGATACGTCATCCGCACAA
TGGATTCGACGTCGCACCAGAATCACCAAGAACTACGGGCCATACTACTT
TTACCAAGAACGCAACACTGCTGAGGGCCGGTTTCGATACACCGACGGGA
ATATCGTTCACACTCCGCTTCCCGACTTTCTTGAAACGATTGTGATGCCC
ATTCTCATCCGAGAAGTGCCCGAACTCTCCAACTTTACTCCAAACCAGTT
GCACGTGGCTCTGTATAAAAAGCAGGAGGAATCGAAAATTCATATGCACA
ATGATAACAAGATGGGCGAATTGGGGCCGTATATAGTCGGAATGTGTCTC
CTTTCGGATTGTTATATGACGTTTGTGAGACCGAAGGATGGAAAGAAGCG
TGTTTTACATCTACCGAGACGTTGTGTTTATGTCATGACTGGAGAGAGTC
ATCACGAGTGGCGGCATGGTATCCTGAAAGGCCAAACATCAAGCGACAGA
GTAAGCTTTACGTTGCGAGAAGTGCGAAAGCTTGCACTTGAGGATGGAGC
GCGAGTTACGAAAAGTAATCACATGCCAAGTGCGCAGAGCATTCGCGATC
AAGCTGCCAAGGATGAGAAAGCACATCGGGGGGAAATCGAGCGGCTCAAC
ATTAATCTCGCCGACTCTCTGGGTACCTGA

protein sequence of Gchil7585.t1

>Gchil7585.t1 ID=Gchil7585.t1|Name=Gchil7585.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=260bp
MTSDRFCLPSFFSPHKSRPSSVPGFILREDAFTVEEEAALIHAVDTSSAQ
WIRRRTRITKNYGPYYFYQERNTAEGRFRYTDGNIVHTPLPDFLETIVMP
ILIREVPELSNFTPNQLHVALYKKQEESKIHMHNDNKMGELGPYIVGMCL
LSDCYMTFVRPKDGKKRVLHLPRRCVYVMTGESHHEWRHGILKGQTSSDR
VSFTLREVRKLALEDGARVTKSNHMPSAQSIRDQAAKDEKAHRGEIERLN
INLADSLGT*

mRNA from alignment at tig00000007_pilon:2098134..2098913+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil7585.t1 ID=Gchil7585.t1|Name=Gchil7585.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=780bp|location=Sequence derived from alignment at tig00000007_pilon:2098134..2098913+ (Gracilaria chilensis NLEC103_M9 male)
ATGACCTCCGATCGGTTCTGTCTACCATCCTTCTTTTCACCACATAAGTC
ACGTCCAAGCTCAGTACCAGGATTCATTCTCCGAGAGGATGCCTTTACTG
TAGAGGAAGAAGCAGCTCTGATTCACGCAGTGGATACGTCATCCGCACAA
TGGATTCGACGTCGCACCAGAATCACCAAGAACTACGGGCCATACTACTT
TTACCAAGAACGCAACACTGCTGAGGGCCGGTTTCGATACACCGACGGGA
ATATCGTTCACACTCCGCTTCCCGACTTTCTTGAAACGATTGTGATGCCC
ATTCTCATCCGAGAAGTGCCCGAACTCTCCAACTTTACTCCAAACCAGTT
GCACGTGGCTCTGTATAAAAAGCAGGAGGAATCGAAAATTCATATGCACA
ATGATAACAAGATGGGCGAATTGGGGCCGTATATAGTCGGAATGTGTCTC
CTTTCGGATTGTTATATGACGTTTGTGAGACCGAAGGATGGAAAGAAGCG
TGTTTTACATCTACCGAGACGTTGTGTTTATGTCATGACTGGAGAGAGTC
ATCACGAGTGGCGGCATGGTATCCTGAAAGGCCAAACATCAAGCGACAGA
GTAAGCTTTACGTTGCGAGAAGTGCGAAAGCTTGCACTTGAGGATGGAGC
GCGAGTTACGAAAAGTAATCACATGCCAAGTGCGCAGAGCATTCGCGATC
AAGCTGCCAAGGATGAGAAAGCACATCGGGGGGAAATCGAGCGGCTCAAC
ATTAATCTCGCCGACTCTCTGGGTACCTGA

Coding sequence (CDS) from alignment at tig00000007_pilon:2098134..2098913+

>Gchil7585.t1 ID=Gchil7585.t1|Name=Gchil7585.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=780bp|location=Sequence derived from alignment at tig00000007_pilon:2098134..2098913+ (Gracilaria chilensis NLEC103_M9 male)
ATGACCTCCGATCGGTTCTGTCTACCATCCTTCTTTTCACCACATAAGTC
ACGTCCAAGCTCAGTACCAGGATTCATTCTCCGAGAGGATGCCTTTACTG
TAGAGGAAGAAGCAGCTCTGATTCACGCAGTGGATACGTCATCCGCACAA
TGGATTCGACGTCGCACCAGAATCACCAAGAACTACGGGCCATACTACTT
TTACCAAGAACGCAACACTGCTGAGGGCCGGTTTCGATACACCGACGGGA
ATATCGTTCACACTCCGCTTCCCGACTTTCTTGAAACGATTGTGATGCCC
ATTCTCATCCGAGAAGTGCCCGAACTCTCCAACTTTACTCCAAACCAGTT
GCACGTGGCTCTGTATAAAAAGCAGGAGGAATCGAAAATTCATATGCACA
ATGATAACAAGATGGGCGAATTGGGGCCGTATATAGTCGGAATGTGTCTC
CTTTCGGATTGTTATATGACGTTTGTGAGACCGAAGGATGGAAAGAAGCG
TGTTTTACATCTACCGAGACGTTGTGTTTATGTCATGACTGGAGAGAGTC
ATCACGAGTGGCGGCATGGTATCCTGAAAGGCCAAACATCAAGCGACAGA
GTAAGCTTTACGTTGCGAGAAGTGCGAAAGCTTGCACTTGAGGATGGAGC
GCGAGTTACGAAAAGTAATCACATGCCAAGTGCGCAGAGCATTCGCGATC
AAGCTGCCAAGGATGAGAAAGCACATCGGGGGGAAATCGAGCGGCTCAAC
ATTAATCTCGCCGACTCTCTGGGTACCTGA