Gchil7569.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil7569.t1
Unique NameGchil7569.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length373
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000007_piloncontigtig00000007_pilon:2049522..2050640 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3847.GLYMA16G03640.1
PFAMsMyb_DNA-binding
Max annot lvl35493|Streptophyta
GOsGO:0001101,GO:0003674,GO:0003700,GO:0006355,GO:0006950,GO:0006970,GO:0008150,GO:0009628,GO:0009651,GO:0009719,GO:0009723,GO:0009725,GO:0009733,GO:0009737,GO:0009739,GO:0009751,GO:0009753,GO:0009889,GO:0010033,GO:0010035,GO:0010038,GO:0010468,GO:0010556,GO:0014070,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0033993,GO:0042221,GO:0042493,GO:0046677,GO:0046686,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0080090,GO:0097305,GO:0140110,GO:1901700,GO:1903506,GO:2000112,GO:2001141
Evalue2.61e-27
EggNOG OGsKOG0724@1|root,KOG0724@2759|Eukaryota,37MTA@33090|Viridiplantae,3GDH5@35493|Streptophyta,4JICY@91835|fabids
Descriptionreveille
COG categoryK
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7569Gchil7569Gracilaria chilensis NLEC103_M9 malegenetig00000007_pilon 2049522..2050640 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7569.t1.stop1Gchil7569.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000007_pilon 2049522..2049524 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7569.t1.CDS1Gchil7569.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000007_pilon 2049522..2050640 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7569.t1.exon1Gchil7569.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000007_pilon 2049522..2050640 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7569.t1.start1Gchil7569.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000007_pilon 2050638..2050640 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7569.t1Gchil7569.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000007_pilon 2049522..2050640 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil7569.t1 ID=Gchil7569.t1|Name=Gchil7569.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=373bp
MPVATQPLTRPPLSMSPTLTSALHAQHFPLAPPHALAVSPHLHAAAIGAS
PPFVQYPIPTKKPRKPYVITKNRESWTAEEHQSFVDALKKHGRNWKLIEQ
HVKTKNVIQIRSHAQKYFLKVQKNNTGEHVPPPRPKRKNSTSNSAAAAAA
AVAAAAAVRSPVLSKPGSAAQSPALYTHPALVRSPNLASYAMQVAATYPY
SPYQMNPHAIAAAMAASQHTAHLRNVHHSPQRRSRSARTSTPDFSSRGAK
RSTSSPSLLRGVDASPAFKVAKVEKTVTSPHTSSAPVAPSGLQSPSPNFA
NIYSFFARMFDPQKEYDVVSIVKEQKMSPLDREVIKLLVSNLELNIANTT
FRQQLLDTYRQQLQQSVQQTVS*
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spliced messenger RNA

>Gchil7569.t1 ID=Gchil7569.t1|Name=Gchil7569.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1119bp|location=Sequence derived from alignment at tig00000007_pilon:2049522..2050640- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGGTAGCCACGCAGCCGCTCACCCGCCCGCCTCTCTCCATGTCACC
CACGCTCACCTCCGCCTTGCACGCGCAGCATTTCCCCCTTGCTCCCCCCC
ACGCCCTCGCCGTTTCTCCTCATCTGCATGCCGCAGCCATCGGTGCCAGC
CCACCCTTCGTTCAATACCCCATCCCCACCAAGAAGCCGCGCAAACCCTA
CGTCATCACCAAGAACCGCGAGAGTTGGACCGCCGAGGAGCACCAGTCCT
TCGTCGACGCCCTCAAGAAACATGGCCGCAATTGGAAGCTTATCGAGCAG
CACGTCAAGACCAAGAACGTGATTCAGATTCGCTCCCATGCCCAAAAGTA
CTTTCTCAAGGTGCAGAAGAACAACACTGGCGAACATGTCCCGCCGCCGC
GCCCGAAACGAAAGAATTCCACCTCCAACTCCGCTGCAGCAGCAGCTGCT
GCTGTCGCCGCCGCTGCCGCCGTGCGATCTCCGGTCCTATCCAAGCCTGG
TAGCGCCGCACAAAGCCCCGCCTTGTACACGCATCCTGCCTTGGTACGCT
CCCCAAATCTTGCATCGTATGCCATGCAAGTTGCTGCCACCTACCCATAC
TCTCCGTATCAGATGAATCCTCATGCCATTGCTGCCGCCATGGCCGCTTC
TCAGCACACTGCACACCTTCGAAACGTTCATCATTCGCCGCAGAGACGCT
CGAGAAGCGCTCGTACTTCCACTCCTGATTTTTCTAGCAGAGGTGCAAAA
CGATCCACATCCTCACCGTCCCTTTTGCGAGGCGTAGACGCCAGTCCCGC
GTTCAAGGTCGCAAAAGTTGAGAAGACGGTCACCTCCCCACACACTTCTT
CGGCACCTGTTGCTCCTAGTGGTCTGCAAAGCCCGTCACCAAACTTTGCC
AATATCTACTCCTTCTTTGCCAGGATGTTTGACCCGCAAAAAGAGTATGA
CGTTGTTTCTATTGTTAAAGAGCAGAAAATGTCGCCCTTGGACAGGGAGG
TTATCAAGCTGCTTGTTTCAAACTTGGAGCTCAATATAGCGAACACTACA
TTTAGACAGCAGTTGTTGGATACTTATCGACAGCAGCTGCAGCAATCTGT
ACAGCAGACCGTCTCATGA
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protein sequence of Gchil7569.t1

>Gchil7569.t1 ID=Gchil7569.t1|Name=Gchil7569.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=373bp
MPVATQPLTRPPLSMSPTLTSALHAQHFPLAPPHALAVSPHLHAAAIGAS
PPFVQYPIPTKKPRKPYVITKNRESWTAEEHQSFVDALKKHGRNWKLIEQ
HVKTKNVIQIRSHAQKYFLKVQKNNTGEHVPPPRPKRKNSTSNSAAAAAA
AVAAAAAVRSPVLSKPGSAAQSPALYTHPALVRSPNLASYAMQVAATYPY
SPYQMNPHAIAAAMAASQHTAHLRNVHHSPQRRSRSARTSTPDFSSRGAK
RSTSSPSLLRGVDASPAFKVAKVEKTVTSPHTSSAPVAPSGLQSPSPNFA
NIYSFFARMFDPQKEYDVVSIVKEQKMSPLDREVIKLLVSNLELNIANTT
FRQQLLDTYRQQLQQSVQQTVS*
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mRNA from alignment at tig00000007_pilon:2049522..2050640-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil7569.t1 ID=Gchil7569.t1|Name=Gchil7569.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1119bp|location=Sequence derived from alignment at tig00000007_pilon:2049522..2050640- (Gracilaria chilensis NLEC103_M9 male)
ATGCCGGTAGCCACGCAGCCGCTCACCCGCCCGCCTCTCTCCATGTCACC
CACGCTCACCTCCGCCTTGCACGCGCAGCATTTCCCCCTTGCTCCCCCCC
ACGCCCTCGCCGTTTCTCCTCATCTGCATGCCGCAGCCATCGGTGCCAGC
CCACCCTTCGTTCAATACCCCATCCCCACCAAGAAGCCGCGCAAACCCTA
CGTCATCACCAAGAACCGCGAGAGTTGGACCGCCGAGGAGCACCAGTCCT
TCGTCGACGCCCTCAAGAAACATGGCCGCAATTGGAAGCTTATCGAGCAG
CACGTCAAGACCAAGAACGTGATTCAGATTCGCTCCCATGCCCAAAAGTA
CTTTCTCAAGGTGCAGAAGAACAACACTGGCGAACATGTCCCGCCGCCGC
GCCCGAAACGAAAGAATTCCACCTCCAACTCCGCTGCAGCAGCAGCTGCT
GCTGTCGCCGCCGCTGCCGCCGTGCGATCTCCGGTCCTATCCAAGCCTGG
TAGCGCCGCACAAAGCCCCGCCTTGTACACGCATCCTGCCTTGGTACGCT
CCCCAAATCTTGCATCGTATGCCATGCAAGTTGCTGCCACCTACCCATAC
TCTCCGTATCAGATGAATCCTCATGCCATTGCTGCCGCCATGGCCGCTTC
TCAGCACACTGCACACCTTCGAAACGTTCATCATTCGCCGCAGAGACGCT
CGAGAAGCGCTCGTACTTCCACTCCTGATTTTTCTAGCAGAGGTGCAAAA
CGATCCACATCCTCACCGTCCCTTTTGCGAGGCGTAGACGCCAGTCCCGC
GTTCAAGGTCGCAAAAGTTGAGAAGACGGTCACCTCCCCACACACTTCTT
CGGCACCTGTTGCTCCTAGTGGTCTGCAAAGCCCGTCACCAAACTTTGCC
AATATCTACTCCTTCTTTGCCAGGATGTTTGACCCGCAAAAAGAGTATGA
CGTTGTTTCTATTGTTAAAGAGCAGAAAATGTCGCCCTTGGACAGGGAGG
TTATCAAGCTGCTTGTTTCAAACTTGGAGCTCAATATAGCGAACACTACA
TTTAGACAGCAGTTGTTGGATACTTATCGACAGCAGCTGCAGCAATCTGT
ACAGCAGACCGTCTCATGA
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Coding sequence (CDS) from alignment at tig00000007_pilon:2049522..2050640-

>Gchil7569.t1 ID=Gchil7569.t1|Name=Gchil7569.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1119bp|location=Sequence derived from alignment at tig00000007_pilon:2049522..2050640- (Gracilaria chilensis NLEC103_M9 male)
ATGCCGGTAGCCACGCAGCCGCTCACCCGCCCGCCTCTCTCCATGTCACC
CACGCTCACCTCCGCCTTGCACGCGCAGCATTTCCCCCTTGCTCCCCCCC
ACGCCCTCGCCGTTTCTCCTCATCTGCATGCCGCAGCCATCGGTGCCAGC
CCACCCTTCGTTCAATACCCCATCCCCACCAAGAAGCCGCGCAAACCCTA
CGTCATCACCAAGAACCGCGAGAGTTGGACCGCCGAGGAGCACCAGTCCT
TCGTCGACGCCCTCAAGAAACATGGCCGCAATTGGAAGCTTATCGAGCAG
CACGTCAAGACCAAGAACGTGATTCAGATTCGCTCCCATGCCCAAAAGTA
CTTTCTCAAGGTGCAGAAGAACAACACTGGCGAACATGTCCCGCCGCCGC
GCCCGAAACGAAAGAATTCCACCTCCAACTCCGCTGCAGCAGCAGCTGCT
GCTGTCGCCGCCGCTGCCGCCGTGCGATCTCCGGTCCTATCCAAGCCTGG
TAGCGCCGCACAAAGCCCCGCCTTGTACACGCATCCTGCCTTGGTACGCT
CCCCAAATCTTGCATCGTATGCCATGCAAGTTGCTGCCACCTACCCATAC
TCTCCGTATCAGATGAATCCTCATGCCATTGCTGCCGCCATGGCCGCTTC
TCAGCACACTGCACACCTTCGAAACGTTCATCATTCGCCGCAGAGACGCT
CGAGAAGCGCTCGTACTTCCACTCCTGATTTTTCTAGCAGAGGTGCAAAA
CGATCCACATCCTCACCGTCCCTTTTGCGAGGCGTAGACGCCAGTCCCGC
GTTCAAGGTCGCAAAAGTTGAGAAGACGGTCACCTCCCCACACACTTCTT
CGGCACCTGTTGCTCCTAGTGGTCTGCAAAGCCCGTCACCAAACTTTGCC
AATATCTACTCCTTCTTTGCCAGGATGTTTGACCCGCAAAAAGAGTATGA
CGTTGTTTCTATTGTTAAAGAGCAGAAAATGTCGCCCTTGGACAGGGAGG
TTATCAAGCTGCTTGTTTCAAACTTGGAGCTCAATATAGCGAACACTACA
TTTAGACAGCAGTTGTTGGATACTTATCGACAGCAGCTGCAGCAATCTGT
ACAGCAGACCGTCTCATGA
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