Gchil7567.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil7567.t1
Unique NameGchil7567.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length424
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000007_piloncontigtig00000007_pilon:2045549..2046820 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMQ111CT
Preferred nameTOP6A
PFAMsTP6A_N
Max annot lvl2759|Eukaryota
KEGG koko:K03166,ko:K10878
KEGG Pathwayko04113,map04113
GOsGO:0000003,GO:0000228,GO:0000280,GO:0000706,GO:0000729,GO:0001708,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0003916,GO:0003918,GO:0004518,GO:0004519,GO:0004520,GO:0004536,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007127,GO:0007131,GO:0008094,GO:0008150,GO:0008152,GO:0008544,GO:0009888,GO:0009913,GO:0009957,GO:0009987,GO:0016043,GO:0016462,GO:0016787,GO:0016788,GO:0016817,GO:0016818,GO:0016853,GO:0016887,GO:0016889,GO:0016894,GO:0017111,GO:0022402,GO:0022414,GO:0030154,GO:0030855,GO:0031974,GO:0031981,GO:0032502,GO:0033554,GO:0034641,GO:0035825,GO:0042138,GO:0042623,GO:0042802,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045165,GO:0046483,GO:0048285,GO:0048856,GO:0048869,GO:0050896,GO:0051321,GO:0051716,GO:0060429,GO:0061505,GO:0061982,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0097159,GO:0140013,GO:0140097,GO:1901360,GO:1901363,GO:1903046
Evalue4.48e-189
EggNOG OGsCOG1697@1|root,KOG2795@2759|Eukaryota
EC5.99.1.3
DescriptionDNA topoisomerase type II (ATP-hydrolyzing) activity
COG categoryL
BRITEko00000,ko00001,ko01000,ko03032,ko03400
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7567Gchil7567Gracilaria chilensis NLEC103_M9 malegenetig00000007_pilon 2045549..2046820 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7567.t1.stop1Gchil7567.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000007_pilon 2045549..2045551 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7567.t1.CDS1Gchil7567.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000007_pilon 2045549..2046820 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7567.t1.exon1Gchil7567.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000007_pilon 2045549..2046820 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7567.t1.start1Gchil7567.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000007_pilon 2046818..2046820 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7567.t1Gchil7567.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000007_pilon 2045549..2046820 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil7567.t1 ID=Gchil7567.t1|Name=Gchil7567.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=424bp
MSPTTPGSNRKKGATARGRIAKRKTSNSNVPPTTEVMRPVLHLRDSMRQQ
QQTRVTLSDMKLTGVLKEVLELAGDNVRRRIEEAMARIARSILEGHGFNY
VLPTRSASNQLYVAELDRIVLKDKTTIRSFASTSSVRKTAIITRIMRLVW
ELCQKGIHTTKRDLYYTDVKLFKTQNDSDDVLNDVACMLGCTRTSLSVVA
SEKGIVIGRVQFREAGDLIDCTRMGVGGKAIPPYIERITDIESDAEFILL
VEKDAAFMRLAEDRFYNKYACIIITAKGQPDVATRLFLKKLKETLKIPIL
GLVDSDPYGLKILSVYMSGSKNMSYDSANLTTPDIKWLGIRPSDLNKYGI
PDQCRLAMTEHDIKTGKELLEEEFIKKNEQWYKELELMVKNREKAEIQAL
SNFGFQYLTEQYLPRKLAQGDWI*
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spliced messenger RNA

>Gchil7567.t1 ID=Gchil7567.t1|Name=Gchil7567.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1272bp|location=Sequence derived from alignment at tig00000007_pilon:2045549..2046820- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCACCGACAACGCCAGGCTCGAACCGAAAGAAAGGCGCCACTGCGAG
GGGAAGAATCGCCAAGAGAAAAACGTCTAATTCCAATGTGCCACCCACGA
CTGAAGTGATGCGGCCCGTTCTACATCTACGAGATTCTATGCGACAGCAA
CAACAAACGCGGGTTACGTTGTCCGACATGAAGTTGACAGGAGTGTTGAA
AGAGGTACTCGAACTGGCCGGGGATAATGTACGCCGTCGAATAGAAGAAG
CCATGGCACGTATCGCGAGGTCAATACTGGAAGGTCATGGGTTCAATTAC
GTCCTTCCAACGAGATCAGCCAGCAATCAACTTTATGTTGCCGAACTTGA
TCGGATTGTTTTGAAAGATAAAACAACAATAAGATCTTTTGCAAGTACTT
CAAGCGTTAGAAAGACCGCGATCATAACAAGAATCATGAGACTTGTATGG
GAATTATGCCAAAAGGGAATTCATACCACAAAGCGTGATTTATATTACAC
AGATGTCAAGTTGTTTAAGACACAGAATGATAGTGATGATGTGCTGAATG
ATGTGGCATGTATGCTTGGATGTACAAGAACCAGTTTGTCAGTTGTGGCT
TCCGAAAAAGGTATTGTAATAGGACGTGTTCAATTTCGTGAGGCTGGTGA
CTTGATAGATTGTACTAGAATGGGTGTGGGAGGAAAAGCCATTCCCCCAT
ACATCGAGAGAATTACCGATATTGAAAGCGACGCGGAATTTATTCTCTTG
GTTGAGAAAGATGCAGCGTTTATGCGCTTGGCAGAAGATCGATTTTACAA
CAAGTATGCCTGTATCATAATTACAGCGAAAGGACAACCAGATGTTGCCA
CACGCCTCTTTTTGAAGAAACTGAAGGAAACATTGAAGATTCCCATCTTA
GGTTTGGTTGATTCTGATCCTTATGGACTTAAGATTCTTAGTGTATATAT
GTCTGGTTCGAAGAATATGAGTTATGATTCTGCGAATCTTACCACTCCGG
ATATTAAATGGCTTGGGATAAGACCAAGTGATCTCAATAAGTATGGTATT
CCTGATCAATGTCGATTGGCCATGACAGAACACGATATCAAAACCGGAAA
AGAACTTTTGGAAGAAGAATTCATAAAGAAGAATGAACAATGGTACAAGG
AACTTGAGTTAATGGTGAAAAATAGAGAAAAAGCTGAAATTCAGGCTTTG
TCCAATTTTGGATTTCAATATCTGACGGAGCAATACCTTCCTCGGAAGTT
AGCACAGGGTGATTGGATATAG
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protein sequence of Gchil7567.t1

>Gchil7567.t1 ID=Gchil7567.t1|Name=Gchil7567.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=424bp
MSPTTPGSNRKKGATARGRIAKRKTSNSNVPPTTEVMRPVLHLRDSMRQQ
QQTRVTLSDMKLTGVLKEVLELAGDNVRRRIEEAMARIARSILEGHGFNY
VLPTRSASNQLYVAELDRIVLKDKTTIRSFASTSSVRKTAIITRIMRLVW
ELCQKGIHTTKRDLYYTDVKLFKTQNDSDDVLNDVACMLGCTRTSLSVVA
SEKGIVIGRVQFREAGDLIDCTRMGVGGKAIPPYIERITDIESDAEFILL
VEKDAAFMRLAEDRFYNKYACIIITAKGQPDVATRLFLKKLKETLKIPIL
GLVDSDPYGLKILSVYMSGSKNMSYDSANLTTPDIKWLGIRPSDLNKYGI
PDQCRLAMTEHDIKTGKELLEEEFIKKNEQWYKELELMVKNREKAEIQAL
SNFGFQYLTEQYLPRKLAQGDWI*
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mRNA from alignment at tig00000007_pilon:2045549..2046820-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil7567.t1 ID=Gchil7567.t1|Name=Gchil7567.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1272bp|location=Sequence derived from alignment at tig00000007_pilon:2045549..2046820- (Gracilaria chilensis NLEC103_M9 male)
ATGTCACCGACAACGCCAGGCTCGAACCGAAAGAAAGGCGCCACTGCGAG
GGGAAGAATCGCCAAGAGAAAAACGTCTAATTCCAATGTGCCACCCACGA
CTGAAGTGATGCGGCCCGTTCTACATCTACGAGATTCTATGCGACAGCAA
CAACAAACGCGGGTTACGTTGTCCGACATGAAGTTGACAGGAGTGTTGAA
AGAGGTACTCGAACTGGCCGGGGATAATGTACGCCGTCGAATAGAAGAAG
CCATGGCACGTATCGCGAGGTCAATACTGGAAGGTCATGGGTTCAATTAC
GTCCTTCCAACGAGATCAGCCAGCAATCAACTTTATGTTGCCGAACTTGA
TCGGATTGTTTTGAAAGATAAAACAACAATAAGATCTTTTGCAAGTACTT
CAAGCGTTAGAAAGACCGCGATCATAACAAGAATCATGAGACTTGTATGG
GAATTATGCCAAAAGGGAATTCATACCACAAAGCGTGATTTATATTACAC
AGATGTCAAGTTGTTTAAGACACAGAATGATAGTGATGATGTGCTGAATG
ATGTGGCATGTATGCTTGGATGTACAAGAACCAGTTTGTCAGTTGTGGCT
TCCGAAAAAGGTATTGTAATAGGACGTGTTCAATTTCGTGAGGCTGGTGA
CTTGATAGATTGTACTAGAATGGGTGTGGGAGGAAAAGCCATTCCCCCAT
ACATCGAGAGAATTACCGATATTGAAAGCGACGCGGAATTTATTCTCTTG
GTTGAGAAAGATGCAGCGTTTATGCGCTTGGCAGAAGATCGATTTTACAA
CAAGTATGCCTGTATCATAATTACAGCGAAAGGACAACCAGATGTTGCCA
CACGCCTCTTTTTGAAGAAACTGAAGGAAACATTGAAGATTCCCATCTTA
GGTTTGGTTGATTCTGATCCTTATGGACTTAAGATTCTTAGTGTATATAT
GTCTGGTTCGAAGAATATGAGTTATGATTCTGCGAATCTTACCACTCCGG
ATATTAAATGGCTTGGGATAAGACCAAGTGATCTCAATAAGTATGGTATT
CCTGATCAATGTCGATTGGCCATGACAGAACACGATATCAAAACCGGAAA
AGAACTTTTGGAAGAAGAATTCATAAAGAAGAATGAACAATGGTACAAGG
AACTTGAGTTAATGGTGAAAAATAGAGAAAAAGCTGAAATTCAGGCTTTG
TCCAATTTTGGATTTCAATATCTGACGGAGCAATACCTTCCTCGGAAGTT
AGCACAGGGTGATTGGATATAG
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Coding sequence (CDS) from alignment at tig00000007_pilon:2045549..2046820-

>Gchil7567.t1 ID=Gchil7567.t1|Name=Gchil7567.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1272bp|location=Sequence derived from alignment at tig00000007_pilon:2045549..2046820- (Gracilaria chilensis NLEC103_M9 male)
ATGTCACCGACAACGCCAGGCTCGAACCGAAAGAAAGGCGCCACTGCGAG
GGGAAGAATCGCCAAGAGAAAAACGTCTAATTCCAATGTGCCACCCACGA
CTGAAGTGATGCGGCCCGTTCTACATCTACGAGATTCTATGCGACAGCAA
CAACAAACGCGGGTTACGTTGTCCGACATGAAGTTGACAGGAGTGTTGAA
AGAGGTACTCGAACTGGCCGGGGATAATGTACGCCGTCGAATAGAAGAAG
CCATGGCACGTATCGCGAGGTCAATACTGGAAGGTCATGGGTTCAATTAC
GTCCTTCCAACGAGATCAGCCAGCAATCAACTTTATGTTGCCGAACTTGA
TCGGATTGTTTTGAAAGATAAAACAACAATAAGATCTTTTGCAAGTACTT
CAAGCGTTAGAAAGACCGCGATCATAACAAGAATCATGAGACTTGTATGG
GAATTATGCCAAAAGGGAATTCATACCACAAAGCGTGATTTATATTACAC
AGATGTCAAGTTGTTTAAGACACAGAATGATAGTGATGATGTGCTGAATG
ATGTGGCATGTATGCTTGGATGTACAAGAACCAGTTTGTCAGTTGTGGCT
TCCGAAAAAGGTATTGTAATAGGACGTGTTCAATTTCGTGAGGCTGGTGA
CTTGATAGATTGTACTAGAATGGGTGTGGGAGGAAAAGCCATTCCCCCAT
ACATCGAGAGAATTACCGATATTGAAAGCGACGCGGAATTTATTCTCTTG
GTTGAGAAAGATGCAGCGTTTATGCGCTTGGCAGAAGATCGATTTTACAA
CAAGTATGCCTGTATCATAATTACAGCGAAAGGACAACCAGATGTTGCCA
CACGCCTCTTTTTGAAGAAACTGAAGGAAACATTGAAGATTCCCATCTTA
GGTTTGGTTGATTCTGATCCTTATGGACTTAAGATTCTTAGTGTATATAT
GTCTGGTTCGAAGAATATGAGTTATGATTCTGCGAATCTTACCACTCCGG
ATATTAAATGGCTTGGGATAAGACCAAGTGATCTCAATAAGTATGGTATT
CCTGATCAATGTCGATTGGCCATGACAGAACACGATATCAAAACCGGAAA
AGAACTTTTGGAAGAAGAATTCATAAAGAAGAATGAACAATGGTACAAGG
AACTTGAGTTAATGGTGAAAAATAGAGAAAAAGCTGAAATTCAGGCTTTG
TCCAATTTTGGATTTCAATATCTGACGGAGCAATACCTTCCTCGGAAGTT
AGCACAGGGTGATTGGATATAG
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