Gchil7563.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil7563.t1
Unique NameGchil7563.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length392
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000007_piloncontigtig00000007_pilon:2036067..2037242 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705833.1
Preferred nameARX1
PFAMsPeptidase_M24
Max annot lvl2759|Eukaryota
KEGG rclassRC00020
KEGG koko:K01265,ko:K04040,ko:K14813
KEGG ReactionR06284,R09067,R11514,R11517
KEGG Pathwayko00860,ko01100,ko01110,map00860,map01100,map01110
GOsGO:0000054,GO:0000055,GO:0001558,GO:0003674,GO:0003676,GO:0003677,GO:0003700,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005886,GO:0006355,GO:0006403,GO:0006405,GO:0006508,GO:0006611,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0007049,GO:0007154,GO:0007165,GO:0008104,GO:0008150,GO:0008152,GO:0008233,GO:0008237,GO:0009719,GO:0009725,GO:0009733,GO:0009734,GO:0009735,GO:0009755,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010033,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0010941,GO:0015031,GO:0015833,GO:0015931,GO:0016020,GO:0016787,GO:0019219,GO:0019222,GO:0019538,GO:0019899,GO:0022402,GO:0022613,GO:0023052,GO:0030684,GO:0030687,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031503,GO:0031625,GO:0031974,GO:0031981,GO:0032870,GO:0032991,GO:0033036,GO:0033750,GO:0034613,GO:0040008,GO:0042221,GO:0042254,GO:0042273,GO:0042886,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044238,GO:0044389,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0044770,GO:0044843,GO:0045184,GO:0045595,GO:0045597,GO:0045892,GO:0045934,GO:0046907,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050657,GO:0050658,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051094,GO:0051128,GO:0051168,GO:0051169,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051236,GO:0051252,GO:0051253,GO:0051302,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0051716,GO:0060255,GO:0060548,GO:0065007,GO:0070011,GO:0070013,GO:0070727,GO:0070887,GO:0071166,GO:0071310,GO:0071365,GO:0071426,GO:0071428,GO:0071495,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0080090,GO:0097159,GO:0140096,GO:0140110,GO:1901363,GO:1901564,GO:1902679,GO:1903506,GO:1903507,GO:1990904,GO:2000112,GO:2000113,GO:2001141
Evalue2.06e-111
EggNOG OGsCOG0024@1|root,KOG2776@2759|Eukaryota
EC2.5.1.133,2.5.1.62,3.4.11.18
DescriptionProliferation-associated protein
COG categoryJ
BRITEko00000,ko00001,ko01000,ko01002,ko01006,ko03009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7563Gchil7563Gracilaria chilensis NLEC103_M9 malegenetig00000007_pilon 2036067..2037242 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7563.t1.stop1Gchil7563.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000007_pilon 2036067..2036069 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7563.t1.CDS1Gchil7563.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000007_pilon 2036067..2037242 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7563.t1.exon1Gchil7563.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000007_pilon 2036067..2037242 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7563.t1.start1Gchil7563.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000007_pilon 2037240..2037242 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7563.t1Gchil7563.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000007_pilon 2036067..2037242 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil7563.t1 ID=Gchil7563.t1|Name=Gchil7563.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=392bp
MAEVQGERGIEHSDVLDKYKAAGAIVDDALELVRKAAYAGMAVKTLCQLG
DTIITNKAAGVYSKARTESGERLEKGVAFPTCVCVKNCVSHFCPIETDAN
ANDKLEAGDQITVQFGAHIDGYAAISAHTMLVKESKEAVSPPPLRGRAAD
VVVAAYTAADAALRLMKVGNSNEQVSDLFAHVAADFEVELLDGVLSHQMK
RYVIDGSKVIMNKQTVEAHADRWQFEPCEVYNLDVVMSTGEGKAIEKDTR
ETVYKRQVDVDYQLKMKTSRQILAEINKSHPTMPFTLRALSDAKKARMAM
TEMMKHNLVTPYPVLYEKDGAVIGRCSMTVLVTANNTLVVTKTPMPPVEC
DKELKNEEVKALLAISMEKKKKKKKKKKAASGGDVVDAMES*
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spliced messenger RNA

>Gchil7563.t1 ID=Gchil7563.t1|Name=Gchil7563.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1176bp|location=Sequence derived from alignment at tig00000007_pilon:2036067..2037242- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAGAGGTTCAGGGGGAGCGTGGAATAGAACACTCGGACGTGTTGGA
CAAGTACAAGGCTGCCGGTGCTATTGTAGACGATGCACTGGAACTGGTTC
GGAAGGCGGCTTATGCGGGAATGGCTGTGAAAACCCTGTGCCAGTTGGGA
GATACTATTATTACAAACAAGGCGGCCGGGGTATATTCCAAAGCACGGAC
TGAGAGCGGTGAGCGTTTAGAAAAAGGAGTCGCATTCCCGACATGTGTAT
GTGTGAAAAACTGTGTCAGCCATTTTTGCCCGATTGAAACTGATGCCAAT
GCAAACGACAAATTGGAAGCAGGCGATCAGATCACAGTACAGTTCGGAGC
ACATATCGATGGATATGCTGCAATATCGGCGCACACCATGCTCGTTAAGG
AGAGTAAAGAAGCCGTGTCACCACCACCCTTGCGAGGAAGAGCAGCCGAT
GTGGTTGTGGCCGCGTATACTGCGGCAGACGCTGCATTGCGGTTGATGAA
GGTTGGGAATAGTAACGAACAAGTGAGCGATTTGTTTGCACATGTTGCGG
CGGATTTTGAGGTGGAGTTGTTGGACGGTGTTTTGAGTCATCAAATGAAG
CGGTACGTCATTGATGGATCAAAGGTAATCATGAATAAGCAAACCGTCGA
AGCCCATGCGGATCGGTGGCAGTTCGAGCCGTGTGAGGTCTACAATCTCG
ACGTTGTCATGAGCACCGGCGAGGGAAAGGCCATTGAAAAGGATACTAGA
GAAACTGTGTACAAGAGACAAGTTGATGTTGACTATCAACTGAAGATGAA
AACGTCCCGTCAGATTCTTGCGGAAATCAACAAGTCCCATCCTACGATGC
CTTTCACACTGCGAGCCCTGAGTGATGCGAAGAAGGCTCGTATGGCTATG
ACAGAAATGATGAAGCACAACCTGGTGACTCCTTATCCCGTACTGTATGA
GAAGGATGGGGCTGTGATCGGAAGATGTTCTATGACCGTCTTGGTCACAG
CAAATAACACCCTTGTCGTCACGAAGACTCCGATGCCTCCTGTAGAATGC
GACAAGGAGCTGAAAAATGAGGAGGTCAAGGCCCTATTGGCTATTTCCAT
GGAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGGCTGCAAGTGGAGGTG
ATGTCGTAGATGCCATGGAATCTTAA
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protein sequence of Gchil7563.t1

>Gchil7563.t1 ID=Gchil7563.t1|Name=Gchil7563.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=392bp
MAEVQGERGIEHSDVLDKYKAAGAIVDDALELVRKAAYAGMAVKTLCQLG
DTIITNKAAGVYSKARTESGERLEKGVAFPTCVCVKNCVSHFCPIETDAN
ANDKLEAGDQITVQFGAHIDGYAAISAHTMLVKESKEAVSPPPLRGRAAD
VVVAAYTAADAALRLMKVGNSNEQVSDLFAHVAADFEVELLDGVLSHQMK
RYVIDGSKVIMNKQTVEAHADRWQFEPCEVYNLDVVMSTGEGKAIEKDTR
ETVYKRQVDVDYQLKMKTSRQILAEINKSHPTMPFTLRALSDAKKARMAM
TEMMKHNLVTPYPVLYEKDGAVIGRCSMTVLVTANNTLVVTKTPMPPVEC
DKELKNEEVKALLAISMEKKKKKKKKKKAASGGDVVDAMES*
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mRNA from alignment at tig00000007_pilon:2036067..2037242-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil7563.t1 ID=Gchil7563.t1|Name=Gchil7563.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1176bp|location=Sequence derived from alignment at tig00000007_pilon:2036067..2037242- (Gracilaria chilensis NLEC103_M9 male)
ATGGCAGAGGTTCAGGGGGAGCGTGGAATAGAACACTCGGACGTGTTGGA
CAAGTACAAGGCTGCCGGTGCTATTGTAGACGATGCACTGGAACTGGTTC
GGAAGGCGGCTTATGCGGGAATGGCTGTGAAAACCCTGTGCCAGTTGGGA
GATACTATTATTACAAACAAGGCGGCCGGGGTATATTCCAAAGCACGGAC
TGAGAGCGGTGAGCGTTTAGAAAAAGGAGTCGCATTCCCGACATGTGTAT
GTGTGAAAAACTGTGTCAGCCATTTTTGCCCGATTGAAACTGATGCCAAT
GCAAACGACAAATTGGAAGCAGGCGATCAGATCACAGTACAGTTCGGAGC
ACATATCGATGGATATGCTGCAATATCGGCGCACACCATGCTCGTTAAGG
AGAGTAAAGAAGCCGTGTCACCACCACCCTTGCGAGGAAGAGCAGCCGAT
GTGGTTGTGGCCGCGTATACTGCGGCAGACGCTGCATTGCGGTTGATGAA
GGTTGGGAATAGTAACGAACAAGTGAGCGATTTGTTTGCACATGTTGCGG
CGGATTTTGAGGTGGAGTTGTTGGACGGTGTTTTGAGTCATCAAATGAAG
CGGTACGTCATTGATGGATCAAAGGTAATCATGAATAAGCAAACCGTCGA
AGCCCATGCGGATCGGTGGCAGTTCGAGCCGTGTGAGGTCTACAATCTCG
ACGTTGTCATGAGCACCGGCGAGGGAAAGGCCATTGAAAAGGATACTAGA
GAAACTGTGTACAAGAGACAAGTTGATGTTGACTATCAACTGAAGATGAA
AACGTCCCGTCAGATTCTTGCGGAAATCAACAAGTCCCATCCTACGATGC
CTTTCACACTGCGAGCCCTGAGTGATGCGAAGAAGGCTCGTATGGCTATG
ACAGAAATGATGAAGCACAACCTGGTGACTCCTTATCCCGTACTGTATGA
GAAGGATGGGGCTGTGATCGGAAGATGTTCTATGACCGTCTTGGTCACAG
CAAATAACACCCTTGTCGTCACGAAGACTCCGATGCCTCCTGTAGAATGC
GACAAGGAGCTGAAAAATGAGGAGGTCAAGGCCCTATTGGCTATTTCCAT
GGAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGGCTGCAAGTGGAGGTG
ATGTCGTAGATGCCATGGAATCTTAA
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Coding sequence (CDS) from alignment at tig00000007_pilon:2036067..2037242-

>Gchil7563.t1 ID=Gchil7563.t1|Name=Gchil7563.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1176bp|location=Sequence derived from alignment at tig00000007_pilon:2036067..2037242- (Gracilaria chilensis NLEC103_M9 male)
ATGGCAGAGGTTCAGGGGGAGCGTGGAATAGAACACTCGGACGTGTTGGA
CAAGTACAAGGCTGCCGGTGCTATTGTAGACGATGCACTGGAACTGGTTC
GGAAGGCGGCTTATGCGGGAATGGCTGTGAAAACCCTGTGCCAGTTGGGA
GATACTATTATTACAAACAAGGCGGCCGGGGTATATTCCAAAGCACGGAC
TGAGAGCGGTGAGCGTTTAGAAAAAGGAGTCGCATTCCCGACATGTGTAT
GTGTGAAAAACTGTGTCAGCCATTTTTGCCCGATTGAAACTGATGCCAAT
GCAAACGACAAATTGGAAGCAGGCGATCAGATCACAGTACAGTTCGGAGC
ACATATCGATGGATATGCTGCAATATCGGCGCACACCATGCTCGTTAAGG
AGAGTAAAGAAGCCGTGTCACCACCACCCTTGCGAGGAAGAGCAGCCGAT
GTGGTTGTGGCCGCGTATACTGCGGCAGACGCTGCATTGCGGTTGATGAA
GGTTGGGAATAGTAACGAACAAGTGAGCGATTTGTTTGCACATGTTGCGG
CGGATTTTGAGGTGGAGTTGTTGGACGGTGTTTTGAGTCATCAAATGAAG
CGGTACGTCATTGATGGATCAAAGGTAATCATGAATAAGCAAACCGTCGA
AGCCCATGCGGATCGGTGGCAGTTCGAGCCGTGTGAGGTCTACAATCTCG
ACGTTGTCATGAGCACCGGCGAGGGAAAGGCCATTGAAAAGGATACTAGA
GAAACTGTGTACAAGAGACAAGTTGATGTTGACTATCAACTGAAGATGAA
AACGTCCCGTCAGATTCTTGCGGAAATCAACAAGTCCCATCCTACGATGC
CTTTCACACTGCGAGCCCTGAGTGATGCGAAGAAGGCTCGTATGGCTATG
ACAGAAATGATGAAGCACAACCTGGTGACTCCTTATCCCGTACTGTATGA
GAAGGATGGGGCTGTGATCGGAAGATGTTCTATGACCGTCTTGGTCACAG
CAAATAACACCCTTGTCGTCACGAAGACTCCGATGCCTCCTGTAGAATGC
GACAAGGAGCTGAAAAATGAGGAGGTCAAGGCCCTATTGGCTATTTCCAT
GGAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGGCTGCAAGTGGAGGTG
ATGTCGTAGATGCCATGGAATCTTAA
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